Rw0G017030

Hippocampus abundant

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00752
Physical Location & Seq
Forward (+)
17577 .. 27905
10329 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G017030.1

Sequence Viewer

Length: 1347 bp
ATGAAAGGGATGGAGAAGAGCGAGTTGAAGCACCTTTTCGTGACGGTGTTCCTCTCTTCGCTTTCCATGTTCTTGGTGATTCCGACCATAACCGACGTCACCATAGCGGCGGTTTGCTCCGGTCGGGAAAGCTGCTCTCTTGCCATTTACCTCTCTGGGTTTCAACAAGCGCATTATGTTTGTGATGCAGATCATTGGCATGGGAACGGTGGTGATGAATCCGGTAATTGGGAACCTGTCGACCTCTATGGGAGGAAGGCTCTGCTCACATTCCCATTGACAGTATCCATTATCCCACTAGCAATATTGGCGTTTAGCCGGGAGACCAACTTTTTCTATGCTTTCTATGTGCTGAGGACACTAACTGCCATGACATGCGAAGGCAGTGTCAACTGCCTCGCCCTCGCTTATGTGGCAGACAACATTTCAGAGAGAGAGAGAGTATCTGCATTTGGACTTCTATCTGGGTTTTTCTCCGCATCATTTGTATGTGGAACTTTAGCAGCTCGTTTCCTCCCCACTTCGTTAACATTTCAGGTTGCCGCCTTAGTATCAATGCTGGCAGCCGTTTACATGAGGATTTTTCTCGAGGAAATTAGGCCATCAGATCATGGGGATAGTACTTTGAGCCAGCCTATCTTGAAGGGATTAGAACCAGTACTAGAGCGAATCACAGATGACGATTACTCTCCGAAGACGAAAATTGAATTTAAGAAGATCCCATCTGTTGGGGATCTTATTAGCTTACTCAGGAGTAGTAAGACCCTGTCACAAGCTGGTATTATTATCTTCTTTCAGAGCCTAGCAGAAGGTGGCATGCAAGCTTCGGTCCTGTATTTCCTTAAGGCTCGTTTTCAGTTCGACAAAAATCAGTTTGCTGATATAATGCTGATTATGGGGATATCAGGAGCCATAACACAGATGATTTTCATGCCCATGATGGCACCTAAAATCGGAGAGGAAAGGATGCTGTCAATTGGGCTCTCACTCAACTGTATCAGTATGTTTCTAAACAGTATAGCGTGGTCACCTTGGGTTCCTTATGCAGCTACTGTGTTTCTTCTTGCCTTACTAGCACAACCAACTATACGCAGCATTGCATCAAAACAAGTTGGACCAAATGAGCAGGGAAAGGCTCAAGGATGCATTTCAGGCATAAGTTCCTTTGCCAACATTGTTGCTCCATTAGTTTTCAGTCCTTTAACAGCTTTATTTTTGTCTGAAGATGCACCGTTCAATTTCCCTGGCTTCAGTATTATGTGCCTTGGACTTGCAACGATCATTGCCTTGATTCAGAGTACAATGATAAGGGCTTCTCCTCCTATTTCAAGTCACAATTTAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

448

Amino Acids

48.79

Weight (kDa)

5.91

Isoelectric Point (pI)

39.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 80 - 395 1.8e-25 Major Facilitator Superfamily
MFS_1 PF07690 262 - 430 7.7e-09 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 99
AccB1I GGYRCC 1 cut(s) 943
AccB7I CCANNNNNTGG 1 cut(s) 728
AccI GTMKAC 1 cut(s) 240
AciI CCGC 4 cut(s) 107, 110, 477, 543
AclWI GGATC 2 cut(s) 712, 741
AcsI RAATTY 1 cut(s) 707
AcuI CTGAAG 2 cut(s) 1234, 1242
AcyI GRCGYC 1 cut(s) 96
AfaI GTAC 3 cut(s) 622, 660, 1300
AfiI CCNNNNNNNGG 3 cut(s) 228, 728, 953
AflII CTTAAG 1 cut(s) 842
AgsI TTSAA 6 cut(s) 28, 164, 643, 707, 1237, 1329
AjnI CCWGG 1 cut(s) 1243
AluBI AGCT 7 cut(s) 132, 506, 744, 776, 824, 1049, 1208
AluI AGCT 7 cut(s) 132, 506, 744, 776, 824, 1049, 1208
Alw26I GTCTC 1 cut(s) 317
AlwI GGATC 2 cut(s) 712, 741
AlwNI CAGNNNCTG 1 cut(s) 1052
Ama87I CYCGRG 1 cut(s) 587
AoxI GGCC 1 cut(s) 599
ApeKI GCWGC 5 cut(s) 132, 503, 563, 1046, 1092
ApoI RAATTY 1 cut(s) 707
ArsI GACNNNNNNTTYG 2 cut(s) 372, 404
AspLEI GCGC 1 cut(s) 172
AspS9I GGNCC 2 cut(s) 829, 1115
AsuC2I CCSGG 1 cut(s) 320
AsuHPI GGTGA 4 cut(s) 88, 91, 224, 1020
AvaI CYCGRG 1 cut(s) 587
AvaII GGWCC 2 cut(s) 829, 1115
BanI GGYRCC 1 cut(s) 943
BanII GRGCYC 1 cut(s) 984
BbsI GAAGAC 1 cut(s) 701
BbvCI CCTCAGC 1 cut(s) 353
BbvI GCAGC 5 cut(s) 119, 515, 575, 1058, 1104
BccI CCATC 4 cut(s) 4, 610, 730, 934
BceAI ACGGC 1 cut(s) 551
BciT130I CCWGG 1 cut(s) 1245
BciVI GTATCC 1 cut(s) 295
BcnI CCSGG 1 cut(s) 320
BcoDI GTCTC 1 cut(s) 317
BfaI CTAG 5 cut(s) 299, 662, 803, 1073, 1345
BfrI CTTAAG 1 cut(s) 842
BfuI GTATCC 1 cut(s) 295
BisI GCNGC 7 cut(s) 108, 133, 504, 543, 564, 1047, 1093
BlsI GCNGC 7 cut(s) 109, 134, 505, 544, 565, 1048, 1094
BmcAI AGTACT 2 cut(s) 622, 660
Bme1390I CCNGG 2 cut(s) 320, 1245
Bme18I GGWCC 2 cut(s) 829, 1115
BmeT110I CYCGRG 1 cut(s) 587
BmgT120I GGNCC 2 cut(s) 829, 1115
BmiI GGNNCC 4 cut(s) 234, 910, 945, 1038
BmrFI CCNGG 2 cut(s) 320, 1245
BmsI GCATC 6 cut(s) 175, 488, 957, 1109, 1133, 1216
BpiI GAAGAC 1 cut(s) 701
BplI GAGNNNNNCTC 2 cut(s) 244, 276
Bpu10I CCTNAGC 1 cut(s) 353
BpuEI CTTGAG 1 cut(s) 1122
BpuMI CCSGG 1 cut(s) 320
BsaBI GATNNNNATC 1 cut(s) 189
BsaHI GRCGYC 1 cut(s) 96
BsaI GGTCTC 1 cut(s) 317
BsaJI CCNNGG 3 cut(s) 1031, 1243, 1264
BsaWI WCCGGW 2 cut(s) 119, 221
Bsc4I CCNNNNNNNGG 3 cut(s) 228, 728, 953
Bse1I ACTGG 1 cut(s) 656
Bse3DI GCAATG 2 cut(s) 1095, 1281
Bse8I GATNNNNATC 1 cut(s) 189
BseBI CCWGG 1 cut(s) 1245
BseDI CCNNGG 3 cut(s) 1031, 1243, 1264
BseGI GGATG 3 cut(s) 15, 972, 1148
BseJI GATNNNNATC 1 cut(s) 189
BseLI CCNNNNNNNGG 3 cut(s) 228, 728, 953
BseMI GCAATG 2 cut(s) 1095, 1281
BseMII CTCAG 2 cut(s) 344, 763
BseNI ACTGG 1 cut(s) 656
BseRI GAGGAG 1 cut(s) 1308
BseXI GCAGC 5 cut(s) 119, 515, 575, 1058, 1104
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 1 cut(s) 601
BshNI GGYRCC 1 cut(s) 943
BsiEI CGRYCG 1 cut(s) 124
BsiHKCI CYCGRG 1 cut(s) 587
BsiSI CCGG 3 cut(s) 120, 222, 319
BslI CCNNNNNNNGG 3 cut(s) 228, 728, 953
BsmAI GTCTC 1 cut(s) 317
BsnI GGCC 1 cut(s) 601
Bso31I GGTCTC 1 cut(s) 317
BsoBI CYCGRG 1 cut(s) 587
Bsp1286I GDGCHC 1 cut(s) 984
Bsp143I GATC 5 cut(s) 190, 607, 717, 733, 1278
BspACI CCGC 4 cut(s) 107, 110, 477, 543
BspANI GGCC 1 cut(s) 601
BspCNI CTCAG 2 cut(s) 345, 762
BspLI GGNNCC 4 cut(s) 234, 910, 945, 1038
BspPI GGATC 2 cut(s) 712, 741
BspQI GCTCTTC 1 cut(s) 11
BspT107I GGYRCC 1 cut(s) 943
BspTI CTTAAG 1 cut(s) 842
BspTNI GGTCTC 1 cut(s) 317
BsrDI GCAATG 2 cut(s) 1095, 1281
BsrI ACTGG 1 cut(s) 656
BssECI CCNNGG 3 cut(s) 1031, 1243, 1264
BssMI GATC 5 cut(s) 190, 607, 717, 733, 1278
BssNI GRCGYC 1 cut(s) 96
BssT1I CCWWGG 2 cut(s) 1031, 1264
Bst2UI CCWGG 1 cut(s) 1245
Bst4CI ACNGT 7 cut(s) 46, 209, 283, 995, 1016, 1054, 1233
Bst6I CTCTTC 2 cut(s) 11, 61
BstACI GRCGYC 1 cut(s) 96
BstAFI CTTAAG 1 cut(s) 842
BstC8I GCNNGC 4 cut(s) 561, 632, 818, 822
BstDEI CTNAG 3 cut(s) 353, 547, 749
BstEII GGTNACC 1 cut(s) 1026
BstF5I GGATG 3 cut(s) 15, 972, 1148
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 5 cut(s) 193, 610, 720, 736, 1281
BstMAI GTCTC 1 cut(s) 317
BstMBI GATC 5 cut(s) 190, 607, 717, 733, 1278
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 4 cut(s) 308, 413, 1073, 1152
BstNI CCWGG 1 cut(s) 1245
BstNSI RCATGY 2 cut(s) 378, 820
BstPI GGTNACC 1 cut(s) 1026
BstSCI CCNGG 2 cut(s) 318, 1243
BstV1I GCAGC 5 cut(s) 119, 515, 575, 1058, 1104
BstV2I GAAGAC 1 cut(s) 701
BstX2I RGATCY 2 cut(s) 717, 733
BstXI CCANNNNNNTGG 1 cut(s) 73
BstYI RGATCY 2 cut(s) 717, 733
BsuI GTATCC 1 cut(s) 295
BsuRI GGCC 1 cut(s) 601
BtsCI GGATG 3 cut(s) 15, 972, 1148
BtsI GCAGTG 1 cut(s) 391
BtsIMutI CAGTG 1 cut(s) 391
Cac8I GCNNGC 4 cut(s) 561, 632, 818, 822
CaiI CAGNNNCTG 1 cut(s) 1052
CfoI GCGC 1 cut(s) 172
Cfr13I GGNCC 2 cut(s) 829, 1115
Csp6I GTAC 3 cut(s) 621, 659, 1299
CviAII CATG 9 cut(s) 67, 200, 370, 375, 574, 611, 817, 931, 937
CviQI GTAC 3 cut(s) 621, 659, 1299
DdeI CTNAG 3 cut(s) 353, 547, 749
DpnI GATC 5 cut(s) 192, 609, 719, 735, 1280
DpnII GATC 5 cut(s) 190, 607, 717, 733, 1278
Eam1104I CTCTTC 2 cut(s) 11, 61
EarI CTCTTC 2 cut(s) 11, 61
Eco130I CCWWGG 2 cut(s) 1031, 1264
Eco24I GRGCYC 1 cut(s) 984
Eco31I GGTCTC 1 cut(s) 317
Eco32I GATATC 1 cut(s) 903
Eco47I GGWCC 2 cut(s) 829, 1115
Eco57I CTGAAG 2 cut(s) 1234, 1242
Eco88I CYCGRG 1 cut(s) 587
Eco91I GGTNACC 1 cut(s) 1026
EcoO65I GGTNACC 1 cut(s) 1026
EcoRII CCWGG 1 cut(s) 1243
EcoRV GATATC 1 cut(s) 903
EcoT14I CCWWGG 2 cut(s) 1031, 1264
EcoT22I ATGCAT 1 cut(s) 1148
EcoT38I GRGCYC 1 cut(s) 984
ErhI CCWWGG 2 cut(s) 1031, 1264
FaeI CATG 9 cut(s) 70, 203, 373, 378, 577, 614, 820, 934, 940
FatI CATG 9 cut(s) 66, 199, 369, 374, 573, 610, 816, 930, 936
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 7 cut(s) 108, 133, 504, 543, 564, 1047, 1093
FokI GGATG 3 cut(s) 22, 979, 1155
FriOI GRGCYC 1 cut(s) 984
Fsp4HI GCNGC 7 cut(s) 108, 133, 504, 543, 564, 1047, 1093
FspBI CTAG 5 cut(s) 299, 662, 803, 1073, 1345
GlaI GCGC 1 cut(s) 171
GluI GCNGC 7 cut(s) 108, 133, 504, 543, 564, 1047, 1093
HaeIII GGCC 1 cut(s) 601
HapII CCGG 3 cut(s) 120, 222, 319
HhaI GCGC 1 cut(s) 172
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 9 cut(s) 70, 203, 373, 378, 577, 614, 820, 934, 940
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HincII GTYRAC 3 cut(s) 241, 391, 528
HindII GTYRAC 3 cut(s) 241, 391, 528
HindIII AAGCTT 1 cut(s) 822
HinfI GANTC 4 cut(s) 79, 218, 669, 1291
HpaI GTTAAC 1 cut(s) 528
HpaII CCGG 3 cut(s) 120, 222, 319
HphI GGTGA 4 cut(s) 88, 91, 224, 1020
Hpy166II GTNNAC 4 cut(s) 241, 391, 528, 571
Hpy188I TCNGA 8 cut(s) 84, 430, 607, 693, 798, 956, 1222, 1296
Hpy188III TCNNGA 6 cut(s) 40, 125, 587, 640, 751, 906
Hpy8I GTNNAC 4 cut(s) 241, 391, 528, 571
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 4 cut(s) 250, 374, 637, 803
HpyCH4III ACNGT 7 cut(s) 46, 209, 283, 995, 1016, 1054, 1233
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 8 cut(s) 188, 449, 820, 1046, 1100, 1146, 1229, 1274
HpyF10VI GCNNNNNNNGC 4 cut(s) 308, 413, 1073, 1152
HpyF3I CTNAG 3 cut(s) 353, 547, 749
HpySE526I ACGT 1 cut(s) 96
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 9 cut(s) 70, 203, 373, 378, 577, 614, 820, 934, 940
HspAI GCGC 1 cut(s) 170
KspAI GTTAAC 1 cut(s) 528
Kzo9I GATC 5 cut(s) 190, 607, 717, 733, 1278
LguI GCTCTTC 1 cut(s) 11
LmnI GCTCC 3 cut(s) 122, 908, 1186
Lsp1109I GCAGC 5 cut(s) 119, 515, 575, 1058, 1104
LweI GCATC 6 cut(s) 175, 488, 957, 1109, 1133, 1216
MaeI CTAG 5 cut(s) 299, 662, 803, 1073, 1345
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 5 cut(s) 40, 97, 768, 1026, 1331
MalI GATC 5 cut(s) 192, 609, 719, 735, 1280
MboI GATC 5 cut(s) 190, 607, 717, 733, 1278
MboII GAAGA 7 cut(s) 28, 48, 706, 727, 781, 1052, 1235
MfeI CAATTG 1 cut(s) 975
MflI RGATCY 2 cut(s) 717, 733
MhlI GDGCHC 1 cut(s) 984
MluCI AATT 7 cut(s) 226, 594, 702, 707, 975, 1237, 1336
MmeI TCCRAC 2 cut(s) 107, 1093
Mph1103I ATGCAT 1 cut(s) 1148
MseI TTAA 4 cut(s) 527, 711, 843, 1202
MslI CAYNNNNRTG 3 cut(s) 198, 487, 935
MspCI CTTAAG 1 cut(s) 842
MspI CCGG 3 cut(s) 120, 222, 319
MspR9I CCNGG 2 cut(s) 320, 1245
MunI CAATTG 1 cut(s) 975
MvaI CCWGG 1 cut(s) 1245
MwoI GCNNNNNNNGC 4 cut(s) 308, 413, 1073, 1152
NciI CCSGG 1 cut(s) 320
NdeII GATC 5 cut(s) 190, 607, 717, 733, 1278
NlaIII CATG 9 cut(s) 70, 203, 373, 378, 577, 614, 820, 934, 940
NlaIV GGNNCC 4 cut(s) 234, 910, 945, 1038
NmuCI GTSAC 5 cut(s) 40, 97, 768, 1026, 1331
NsiI ATGCAT 1 cut(s) 1148
NspI RCATGY 2 cut(s) 378, 820
PaeI GCATGC 1 cut(s) 820
PaeR7I CTCGAG 1 cut(s) 587
PciSI GCTCTTC 1 cut(s) 11
PfeI GAWTC 4 cut(s) 79, 218, 669, 1291
PflFI GACNNNGTC 1 cut(s) 766
PflMI CCANNNNNTGG 1 cut(s) 728
PkrI GCNGC 7 cut(s) 109, 134, 505, 544, 565, 1048, 1094
Psp6I CCWGG 1 cut(s) 1243
PspEI GGTNACC 1 cut(s) 1026
PspGI CCWGG 1 cut(s) 1243
PspN4I GGNNCC 4 cut(s) 234, 910, 945, 1038
PspPI GGNCC 2 cut(s) 829, 1115
PstNI CAGNNNCTG 1 cut(s) 1052
PsuI RGATCY 2 cut(s) 717, 733
PsyI GACNNNGTC 1 cut(s) 766
RsaI GTAC 3 cut(s) 622, 660, 1300
RsaNI GTAC 3 cut(s) 621, 659, 1299
RseI CAYNNNNRTG 3 cut(s) 198, 487, 935
SalI GTCGAC 1 cut(s) 239
SapI GCTCTTC 1 cut(s) 11
SaqAI TTAA 4 cut(s) 527, 711, 843, 1202
SatI GCNGC 7 cut(s) 108, 133, 504, 543, 564, 1047, 1093
Sau3AI GATC 5 cut(s) 190, 607, 717, 733, 1278
Sau96I GGNCC 2 cut(s) 829, 1115
ScaI AGTACT 2 cut(s) 622, 660
ScrFI CCNGG 2 cut(s) 320, 1245
SduI GDGCHC 1 cut(s) 984
SfaNI GCATC 6 cut(s) 175, 488, 957, 1109, 1133, 1216
Sfr274I CTCGAG 1 cut(s) 587
SinI GGWCC 2 cut(s) 829, 1115
SlaI CTCGAG 1 cut(s) 587
SmiMI CAYNNNNRTG 3 cut(s) 198, 487, 935
SmlI CTYRAG 3 cut(s) 587, 842, 1137
SmoI CTYRAG 3 cut(s) 587, 842, 1137
SphI GCATGC 1 cut(s) 820
Sse9I AATT 7 cut(s) 226, 594, 702, 707, 975, 1237, 1336
SsiI CCGC 4 cut(s) 107, 110, 477, 543
SspI AATATT 1 cut(s) 306
SspMI CTAG 5 cut(s) 299, 662, 803, 1073, 1345
StyD4I CCNGG 2 cut(s) 318, 1243
StyI CCWWGG 2 cut(s) 1031, 1264
TaaI ACNGT 7 cut(s) 46, 209, 283, 995, 1016, 1054, 1233
TaiI ACGT 1 cut(s) 99
TaqI TCGA 3 cut(s) 240, 588, 861
TaqII GACCGA 1 cut(s) 817
TasI AATT 7 cut(s) 226, 594, 702, 707, 975, 1237, 1336
TatI WGTACW 3 cut(s) 620, 658, 1298
TauI GCSGC 2 cut(s) 110, 545
TfiI GAWTC 4 cut(s) 79, 218, 669, 1291
Tru1I TTAA 4 cut(s) 527, 711, 843, 1202
Tru9I TTAA 4 cut(s) 527, 711, 843, 1202
TscAI CASTG 1 cut(s) 391
TseFI GTSAC 5 cut(s) 40, 97, 768, 1026, 1331
TseI GCWGC 5 cut(s) 132, 503, 563, 1046, 1092
Tsp45I GTSAC 5 cut(s) 40, 97, 768, 1026, 1331
TspDTI ATGAA 3 cut(s) 17, 231, 919
TspRI CASTG 1 cut(s) 391
Tth111I GACNNNGTC 1 cut(s) 766
Van91I CCANNNNNTGG 1 cut(s) 728
Vha464I CTTAAG 1 cut(s) 842
VpaK11BI GGWCC 2 cut(s) 829, 1115
XapI RAATTY 1 cut(s) 707
XceI RCATGY 2 cut(s) 378, 820
XhoI CTCGAG 1 cut(s) 587
XmiI GTMKAC 1 cut(s) 240
XspI CTAG 5 cut(s) 299, 662, 803, 1073, 1345
ZraI GACGTC 1 cut(s) 97
ZrmI AGTACT 2 cut(s) 622, 660
Zsp2I ATGCAT 1 cut(s) 1148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.