AT2G16980

Hippocampus abundant transcript-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0001419
Physical Location & Seq
Forward (+)
7376199 .. 7381165
4967 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G16980.1

Sequence Viewer

Length: 1272 bp
ATGTATAGTTCAGAATTTGAAGTGAAGTTTAGGAGAGGAAGAGAGATGGAGGTATTTAGACTTGGAGAGCTGAGACACCTACTGGTGACGGTTTTCTTGTCGGGGCTCGCCGAATACTTGATAAGGCCAGTGATGACTGACGTCACCGTAGCCGCGGTTTGCTCCGGCCTAGACGATTCATGTTCTTTGGCCGTCTATCTCACCGGAGTACAACAAGTGACGGTAGGAATGGGGACAATGGTAATGATGCCAGTGATCGGCAATCTATCGGACAGATATGGAATCAAAGCAATGCTCACTCTTCCCATGTGCCTCTCTGTTCTTCCTCCAGCAATATTAGGGTACAGAAGGGATACCAATTTCTTTTACGCATTTTATGTAATCAAGACCCTATTCGATATGGTCTGCCAAGGCACCATTGACTGTCTCGCTAACGCTTATGTGGCAAAAAATGTTCATGGCACAAAAAGAATATCAATGTTCGGAATTTTAGCAGGTGTCAGCTCGATTTCCGGAGTTTGTGCATCACTATCAGCTCGTTTTTTATCCATAGCTTCGACTTTTCAGGTTGCAGCTATATCATTATTCATTGGCCTGGTGTATATGAGGGTTTTCCTAAAAGAGAGGTTACAAGATGCTGATGATGATGATGAAGCTGATAGTGGTGGTTGTAGAAGTCATCAAGAGGTTCATAATGGTGGTGATCTAAAGATGTTAACTGAGCCGATACTAAGAGATGCACCAACAAAGACACATGTCTTCAACAGTAAGTATTCGTCTTGGAAAGATATGGTCAGCTTGATAAATAATAGCACTATACTCATTCAAGCATTGGTTGTTACATTCTTTGCTACCTTCTCGGAAAGTGGAAGGGGGTCTGCTCTCATGTATTTTCTGAAAGCTCGTTTTGGGTTCAACAAAAATGACTTTGCTGAGCTATTCTTGTTGGTTACCATCATTGGCTCCATCTCCCAGCTATTTATATTGCCGACTTTAAGTTCTACCATTGGAGAACGTAAGGTGTTATCAACGGGGCTTCTTATGGAATTCTTCAACGCGACTTGTCTTAGTGTTGCATGGTCACCATGGGTTCCTTATGCCATGACCATGCTTGTACCCGGAGCCATGTTTGTGATGCCATCTGTTTGTGGTATTGCGTCAAGACAAGTTGGATCCAGTGAACAGGGGAAGGTCCAAGGATGTATATCCGGGGTAAGGGCTTTTGCTCAAGTTGTGGCTCCATTTGTATATAGTCCATTGACAGGTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1

Protein Analysis

423

Amino Acids

46.28

Weight (kDa)

8.27

Isoelectric Point (pI)

37.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 27 - 414 2.2e-22 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 485
AatII GACGTC 1 cut(s) 144
Acc36I ACCTGC 1 cut(s) 485
AccB1I GGYRCC 1 cut(s) 413
AccII CGCG 2 cut(s) 155, 1058
AccIII TCCGGA 1 cut(s) 512
AciI CCGC 2 cut(s) 153, 155
AclWI GGATC 2 cut(s) 1167, 1180
AcoI YGGCCR 1 cut(s) 189
AcsI RAATTY 3 cut(s) 14, 486, 1046
AcyI GRCGYC 1 cut(s) 141
AfaI GTAC 3 cut(s) 210, 344, 1116
AfiI CCNNNNNNNGG 3 cut(s) 257, 1215, 1262
AflIII ACRYGT 1 cut(s) 754
AgsI TTSAA 5 cut(s) 20, 763, 827, 916, 1054
AjnI CCWGG 1 cut(s) 594
Alw26I GTCTC 2 cut(s) 67, 431
AlwI GGATC 2 cut(s) 1167, 1180
Aor13HI TCCGGA 1 cut(s) 512
AoxI GGCC 4 cut(s) 125, 166, 189, 592
ApeKI GCWGC 1 cut(s) 572
ApoI RAATTY 3 cut(s) 14, 486, 1046
AspS9I GGNCC 1 cut(s) 1192
AsuC2I CCSGG 2 cut(s) 1119, 1210
AsuHPI GGTGA 5 cut(s) 97, 136, 193, 713, 1074
AvaII GGWCC 1 cut(s) 1192
BamHI GGATCC 1 cut(s) 1172
BanI GGYRCC 1 cut(s) 413
BanII GRGCYC 1 cut(s) 108
BbsI GAAGAC 1 cut(s) 751
BbvI GCAGC 1 cut(s) 584
BccI CCATC 4 cut(s) 40, 962, 974, 1147
BceAI ACGGC 1 cut(s) 176
BciT130I CCWGG 1 cut(s) 596
BciVI GTATCC 1 cut(s) 346
BcnI CCSGG 2 cut(s) 1119, 1210
BcoDI GTCTC 2 cut(s) 67, 431
BfaI CTAG 1 cut(s) 170
BfuAI ACCTGC 1 cut(s) 485
BfuI GTATCC 1 cut(s) 346
BisI GCNGC 2 cut(s) 153, 573
BlpI GCTNAGC 1 cut(s) 933
BlsI GCNGC 2 cut(s) 154, 574
Bme1390I CCNGG 3 cut(s) 596, 1119, 1210
Bme18I GGWCC 1 cut(s) 1192
BmgT120I GGNCC 1 cut(s) 1192
BmiI GGNNCC 6 cut(s) 415, 964, 1092, 1123, 1174, 1239
BmrFI CCNGG 3 cut(s) 596, 1119, 1210
BmsI GCATC 5 cut(s) 237, 533, 625, 727, 1125
BoxI GACNNNNGTC 2 cut(s) 140, 755
BpiI GAAGAC 1 cut(s) 751
BpmI CTGGAG 1 cut(s) 312
Bpu1102I GCTNAGC 1 cut(s) 933
BpuEI CTTGAG 1 cut(s) 1212
BpuMI CCSGG 2 cut(s) 1119, 1210
BsaBI GATNNNNATC 1 cut(s) 1204
BsaHI GRCGYC 1 cut(s) 141
BsaJI CCNNGG 5 cut(s) 153, 409, 1085, 1195, 1209
BsaWI WCCGGW 2 cut(s) 203, 512
Bsc4I CCNNNNNNNGG 3 cut(s) 257, 1215, 1262
Bse1I ACTGG 4 cut(s) 87, 128, 251, 1176
Bse3DI GCAATG 1 cut(s) 297
Bse8I GATNNNNATC 1 cut(s) 1204
BseAI TCCGGA 1 cut(s) 512
BseBI CCWGG 1 cut(s) 596
BseDI CCNNGG 5 cut(s) 153, 409, 1085, 1195, 1209
BseGI GGATG 1 cut(s) 1205
BseJI GATNNNNATC 1 cut(s) 1204
BseLI CCNNNNNNNGG 3 cut(s) 257, 1215, 1262
BseMI GCAATG 1 cut(s) 297
BseMII CTCAG 3 cut(s) 62, 711, 924
BseNI ACTGG 4 cut(s) 87, 128, 251, 1176
BseXI GCAGC 1 cut(s) 584
BseYI CCCAGC 1 cut(s) 972
Bsh1236I CGCG 2 cut(s) 155, 1058
BshFI GGCC 4 cut(s) 127, 168, 191, 594
BshNI GGYRCC 1 cut(s) 413
BsiSI CCGG 5 cut(s) 165, 204, 513, 1119, 1209
BslFI GGGAC 1 cut(s) 247
BslI CCNNNNNNNGG 3 cut(s) 257, 1215, 1262
BsmAI GTCTC 2 cut(s) 67, 431
BsmFI GGGAC 1 cut(s) 247
BsnI GGCC 4 cut(s) 127, 168, 191, 594
Bsp1286I GDGCHC 1 cut(s) 108
Bsp13I TCCGGA 1 cut(s) 512
Bsp143I GATC 3 cut(s) 255, 703, 1172
Bsp1720I GCTNAGC 1 cut(s) 933
Bsp19I CCATGG 1 cut(s) 1085
BspACI CCGC 2 cut(s) 153, 155
BspANI GGCC 4 cut(s) 127, 168, 191, 594
BspCNI CTCAG 3 cut(s) 63, 712, 925
BspEI TCCGGA 1 cut(s) 512
BspFNI CGCG 2 cut(s) 155, 1058
BspLI GGNNCC 6 cut(s) 415, 964, 1092, 1123, 1174, 1239
BspMI ACCTGC 1 cut(s) 485
BspPI GGATC 2 cut(s) 1167, 1180
BspT107I GGYRCC 1 cut(s) 413
BsrDI GCAATG 1 cut(s) 297
BsrI ACTGG 4 cut(s) 87, 128, 251, 1176
BssECI CCNNGG 5 cut(s) 153, 409, 1085, 1195, 1209
BssMI GATC 3 cut(s) 255, 703, 1172
BssNI GRCGYC 1 cut(s) 141
BssT1I CCWWGG 3 cut(s) 409, 1085, 1195
Bst2UI CCWGG 1 cut(s) 596
Bst4CI ACNGT 5 cut(s) 91, 148, 223, 425, 767
Bst6I CTCTTC 2 cut(s) 34, 306
BstACI GRCGYC 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 5 cut(s) 71, 720, 731, 933, 1067
BstDSI CCRYGG 2 cut(s) 153, 1085
BstEII GGTNACC 2 cut(s) 949, 1080
BstF5I GGATG 1 cut(s) 1205
BstFNI CGCG 2 cut(s) 155, 1058
BstKTI GATC 3 cut(s) 258, 706, 1175
BstMAI GTCTC 2 cut(s) 67, 431
BstMBI GATC 3 cut(s) 255, 703, 1172
BstMWI GCNNNNNNNGC 1 cut(s) 443
BstNI CCWGG 1 cut(s) 596
BstNSI RCATGY 1 cut(s) 758
BstPAI GACNNNNGTC 2 cut(s) 140, 755
BstPI GGTNACC 2 cut(s) 949, 1080
BstSCI CCNGG 3 cut(s) 594, 1117, 1208
BstUI CGCG 2 cut(s) 155, 1058
BstV1I GCAGC 1 cut(s) 584
BstV2I GAAGAC 1 cut(s) 751
BstX2I RGATCY 1 cut(s) 1172
BstYI RGATCY 1 cut(s) 1172
BsuI GTATCC 1 cut(s) 346
BsuRI GGCC 4 cut(s) 127, 168, 191, 594
BtgI CCRYGG 2 cut(s) 153, 1085
BtsCI GGATG 1 cut(s) 1205
BtsIMutI CAGTG 3 cut(s) 135, 258, 1183
BveI ACCTGC 1 cut(s) 485
Cac8I GCNNGC 1 cut(s) 108
Cfr13I GGNCC 1 cut(s) 1192
Cfr42I CCGCGG 1 cut(s) 156
CseI GACGC 1 cut(s) 1146
Csp6I GTAC 3 cut(s) 209, 343, 1115
CviQI GTAC 3 cut(s) 209, 343, 1115
DdeI CTNAG 5 cut(s) 71, 720, 731, 933, 1067
DpnI GATC 3 cut(s) 257, 705, 1174
DpnII GATC 3 cut(s) 255, 703, 1172
EaeI YGGCCR 1 cut(s) 189
Eam1104I CTCTTC 2 cut(s) 34, 306
EarI CTCTTC 2 cut(s) 34, 306
Eco130I CCWWGG 3 cut(s) 409, 1085, 1195
Eco24I GRGCYC 1 cut(s) 108
Eco47I GGWCC 1 cut(s) 1192
Eco91I GGTNACC 2 cut(s) 949, 1080
EcoO65I GGTNACC 2 cut(s) 949, 1080
EcoRI GAATTC 1 cut(s) 1046
EcoRII CCWGG 1 cut(s) 594
EcoT14I CCWWGG 3 cut(s) 409, 1085, 1195
EcoT38I GRGCYC 1 cut(s) 108
ErhI CCWWGG 3 cut(s) 409, 1085, 1195
FaqI GGGAC 1 cut(s) 247
Fnu4HI GCNGC 2 cut(s) 153, 573
FokI GGATG 1 cut(s) 1212
FriOI GRGCYC 1 cut(s) 108
Fsp4HI GCNGC 2 cut(s) 153, 573
FspBI CTAG 1 cut(s) 170
GluI GCNGC 2 cut(s) 153, 573
GsaI CCCAGC 1 cut(s) 976
GsuI CTGGAG 1 cut(s) 312
HaeIII GGCC 4 cut(s) 127, 168, 191, 594
HapII CCGG 5 cut(s) 165, 204, 513, 1119, 1209
HgaI GACGC 1 cut(s) 1146
Hin1I GRCGYC 1 cut(s) 141
HincII GTYRAC 1 cut(s) 717
HindII GTYRAC 1 cut(s) 717
HinfI GANTC 2 cut(s) 176, 282
HpaI GTTAAC 1 cut(s) 717
HpaII CCGG 5 cut(s) 165, 204, 513, 1119, 1209
HphI GGTGA 5 cut(s) 97, 136, 193, 713, 1074
Hpy166II GTNNAC 2 cut(s) 717, 1181
Hpy188I TCNGA 5 cut(s) 13, 271, 485, 862, 897
Hpy188III TCNNGA 4 cut(s) 385, 513, 683, 1161
Hpy8I GTNNAC 2 cut(s) 717, 1181
HpyAV CCTTC 4 cut(s) 342, 864, 865, 1183
HpyCH4III ACNGT 5 cut(s) 91, 148, 223, 425, 767
HpyCH4IV ACGT 2 cut(s) 141, 1015
HpyCH4V TGCA 4 cut(s) 524, 572, 740, 1076
HpyF10VI GCNNNNNNNGC 1 cut(s) 443
HpyF3I CTNAG 5 cut(s) 71, 720, 731, 933, 1067
HpySE526I ACGT 2 cut(s) 141, 1015
Hsp92I GRCGYC 1 cut(s) 141
Kpn2I TCCGGA 1 cut(s) 512
KspAI GTTAAC 1 cut(s) 717
KspI CCGCGG 1 cut(s) 156
Kzo9I GATC 3 cut(s) 255, 703, 1172
LmnI GCTCC 4 cut(s) 167, 968, 1121, 1243
Lsp1109I GCAGC 1 cut(s) 584
LweI GCATC 5 cut(s) 237, 533, 625, 727, 1125
MaeI CTAG 1 cut(s) 170
MaeII ACGT 2 cut(s) 141, 1015
MaeIII GTNAC 7 cut(s) 85, 142, 217, 627, 838, 949, 1080
MalI GATC 3 cut(s) 257, 705, 1174
MboI GATC 3 cut(s) 255, 703, 1172
MboII GAAGA 5 cut(s) 51, 293, 314, 751, 1042
MflI RGATCY 1 cut(s) 1172
MhlI GDGCHC 1 cut(s) 108
MluCI AATT 4 cut(s) 14, 358, 486, 1046
MmeI TCCRAC 1 cut(s) 1150
MnlI CCTC 7 cut(s) 29, 43, 323, 336, 600, 618, 679
MroI TCCGGA 1 cut(s) 512
MseI TTAA 2 cut(s) 716, 995
MslI CAYNNNNRTG 3 cut(s) 696, 1106, 1130
MspA1I CMGCKG 1 cut(s) 155
MspI CCGG 5 cut(s) 165, 204, 513, 1119, 1209
MspR9I CCNGG 3 cut(s) 596, 1119, 1210
MvaI CCWGG 1 cut(s) 596
MvnI CGCG 2 cut(s) 155, 1058
MwoI GCNNNNNNNGC 1 cut(s) 443
NciI CCSGG 2 cut(s) 1119, 1210
NcoI CCATGG 1 cut(s) 1085
NdeII GATC 3 cut(s) 255, 703, 1172
NlaIV GGNNCC 6 cut(s) 415, 964, 1092, 1123, 1174, 1239
NmuCI GTSAC 4 cut(s) 85, 142, 217, 1080
NspI RCATGY 1 cut(s) 758
PaqCI CACCTGC 1 cut(s) 485
PciI ACATGT 1 cut(s) 754
PfeI GAWTC 2 cut(s) 176, 282
PkrI GCNGC 2 cut(s) 154, 574
PscI ACATGT 1 cut(s) 754
PshAI GACNNNNGTC 2 cut(s) 140, 755
Psp6I CCWGG 1 cut(s) 594
PspEI GGTNACC 2 cut(s) 949, 1080
PspFI CCCAGC 1 cut(s) 972
PspGI CCWGG 1 cut(s) 594
PspN4I GGNNCC 6 cut(s) 415, 964, 1092, 1123, 1174, 1239
PspPI GGNCC 1 cut(s) 1192
PsuI RGATCY 1 cut(s) 1172
RsaI GTAC 3 cut(s) 210, 344, 1116
RsaNI GTAC 3 cut(s) 209, 343, 1115
RseI CAYNNNNRTG 3 cut(s) 696, 1106, 1130
SacII CCGCGG 1 cut(s) 156
SaqAI TTAA 2 cut(s) 716, 995
SatI GCNGC 2 cut(s) 153, 573
Sau3AI GATC 3 cut(s) 255, 703, 1172
Sau96I GGNCC 1 cut(s) 1192
ScrFI CCNGG 3 cut(s) 596, 1119, 1210
SduI GDGCHC 1 cut(s) 108
SfaNI GCATC 5 cut(s) 237, 533, 625, 727, 1125
Sfr303I CCGCGG 1 cut(s) 156
SgrBI CCGCGG 1 cut(s) 156
SinI GGWCC 1 cut(s) 1192
SmiMI CAYNNNNRTG 3 cut(s) 696, 1106, 1130
SmlI CTYRAG 1 cut(s) 1227
SmoI CTYRAG 1 cut(s) 1227
Sse9I AATT 4 cut(s) 14, 358, 486, 1046
SsiI CCGC 2 cut(s) 153, 155
SspI AATATT 1 cut(s) 336
SspMI CTAG 1 cut(s) 170
StyD4I CCNGG 3 cut(s) 594, 1117, 1208
StyI CCWWGG 3 cut(s) 409, 1085, 1195
TaaI ACNGT 5 cut(s) 91, 148, 223, 425, 767
TaiI ACGT 2 cut(s) 144, 1018
TaqI TCGA 3 cut(s) 396, 506, 557
TasI AATT 4 cut(s) 14, 358, 486, 1046
TatI WGTACW 1 cut(s) 208
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 2 cut(s) 176, 282
Tru1I TTAA 2 cut(s) 716, 995
Tru9I TTAA 2 cut(s) 716, 995
TscAI CASTG 3 cut(s) 135, 258, 1183
TseFI GTSAC 4 cut(s) 85, 142, 217, 1080
TseI GCWGC 1 cut(s) 572
Tsp45I GTSAC 4 cut(s) 85, 142, 217, 1080
TspDTI ATGAA 5 cut(s) 168, 446, 577, 666, 680
TspRI CASTG 3 cut(s) 135, 258, 1183
VpaK11BI GGWCC 1 cut(s) 1192
XapI RAATTY 3 cut(s) 14, 486, 1046
XceI RCATGY 1 cut(s) 758
XspI CTAG 1 cut(s) 170
ZraI GACGTC 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.