Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001419

Physical Location & Seq

Genomic Coordinates Forward (+)

14610801 .. 14617202

Gene Structure 6402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g11070.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGGAGATGGAGGGCATTGGAGGACTGAGGCATCTGTTTATGACAGTGTTTTTACATGGGTTTGCAAGCTTCATGGTGATTCCAGCCATAACTGATATCACCATGCTGGCTCTTTGCCCTGGTCAAGATGAGTGCTCCCTTGCCATTTACCTCTCTGGTTTTCAACAAGCGATGATAGGTTTGGGAACGGTGGTGATGACTCCACTAATTGGGAATTTGTCGGATGTGTATGGGAGGAAGTCTCTTCTCACGATCCCAATGACCCTCTCCATTGTCCCATTAGCGATATTGGCGTATAGCAGGAAGACAAGCTTCTTTTATGCCTACTATGTGCTGAGGACAGTAACTGCCTTGGTAGGTGAAGGCAGCATCAACTGCCTCACCCTTGCTTATGTGGCCGACAATGTTTCAGAGAGAGAACGAATATCTGCATTTGGAATTCTTGCTGGATTTACCTCTGCAGCATTTGTATGTGGAACCTTAGCAGCTCGTTTCCTCTCCACTGCTTCAACATTTCAGGTTGCTGCCTTTGCATCAATGCTTTCAACTATCTACATGAGAATTTTTCTCAAGGAGAGCTTGCCGGGCGATGACAGTACTTTGAGGCAGCCCATCTTGAAAGGAGGAGTACCAGAAGTTGTTGATGAAGGCGATGTCTACTCGCCGAAAACGAAACAAGTATTTAAGAAAATTCCATCTCCAGGAGATTTGATTTCCCTACTGAGGAGTAGTAAGATTCTGTCACAAGCAGCAGTTGTTTCCTTCTTTCAGAGCCTGGCAGAGGGTGGCATGCAAGCTTCATTAATGTATTTCTTAAAGGCTCGTTTCCACTTCAACAAGAATCAGTTTGCTGATCTAATGCTGATTGTTGGGATATCGGGGACCATATCACAGCTGCTTTTCATGCCAATGTTGGCAACTGCGATTGGAGAGGAAAAGTTGCTTGCAATTGGGCTCATAATGGGCAGTATGAATATGTTTCTTAACAGCATTTCATTGGCAGTTTGGGTTCCTTATGCTGCGACTCTGTTTTCTGTTTTTGGATTTTTAGTGCAGCCAAGTATACGCAGCATCGCATCAAAACAAGTTGGACTCAATGATCAGGGAAAGGCTCAAGGATGCATTTCAGGCATAAGCTCCTTTGCCAACATTGTTTCTCCATTAATTTTCAGTCCTCTAACAGCTTTATTCCTGTCTGAAGAAGCACCATTTTATTTCCCTGGCTTCAGTATTCTGTGCATTGGCCTTGCAACGATGATTGCCTTCGTTCAGAGCCTAATGATAAGGGCTTCTCCTCACAAAACCAGCAACACCATCTGCGTGGAATCTCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

445

Amino Acids

47.85

Weight (kDa)

8.1

Isoelectric Point (pI)

39.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16970 AT2G16970 AT2G16970 AT2G16970 AT2G16970 AT2G16970 AT2G16970 AT2G16970 AT2G16980 AT2G16980 AT2G16980 AT2G16980 AT2G16980 AT2G16980 AT2G16990 AT2G16990 AT2G16990 AT2G16990 AT2G16990 AT2G16990 AT2G16990 AT2G16990
fragaria_vesca	FvH4_2g15722 FvH4_2g15730 FvH4_2g15730 FvH4_2g15730 FvH4_2g15730 FvH4_2g15730
malus_domestica	MD05G1126300.v1.1 MD10G1129100.v1.1
prunus_persica	Prupe.8G169700_v2.0.a1 Prupe.8G169700_v2.0.a1 Prupe.8G169700_v2.0.a1
pyrus_communis	pycom05g12210 pycom10g11070
rosa_chinensis	RchiOBHm_Chr6g0279031 RchiOBHm_Chr6g0279041
rosa_laevigata	RLG00000013171
rosa_multiflora	Rmu_sc0002080.1_g000008 Rmu_sc0002080.1_g000013
rosa_roxburghii	Rroxscaffold_7G00189190
rosa_rugosa	Rorug06G0121300 Rorug06G0121400.1 Rorug06G0121500 Rorug06G0121600
rosa_samantha	Rh6AG230600 Rh6BG235400 Rh6CG237400 Rh6DG229200
rosa_wichuraiana	Rw0G017030 Rw0G021110 Rw6G020180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	209
AccI	GTMKAC	2 cut(s)	657, 1063
AclWI	GGATC	1 cut(s)	247
AcoI	YGGCCR	1 cut(s)	396
AcsI	RAATTY	4 cut(s)	214, 438, 561, 690
AcuI	CTGAAG	2 cut(s)	1210, 1218
AfaI	GTAC	2 cut(s)	598, 630
AfiI	CCNNNNNNNGG	4 cut(s)	209, 701, 723, 781
AgsI	TTSAA	5 cut(s)	164, 510, 546, 619, 835
AjnI	CCWGG	4 cut(s)	118, 700, 774, 1219
AluBI	AGCT	8 cut(s)	69, 312, 488, 579, 797, 895, 1137, 1184
AluI	AGCT	8 cut(s)	69, 312, 488, 579, 797, 895, 1137, 1184
Alw21I	GWGCWC	1 cut(s)	137
Alw26I	GTCTC	1 cut(s)	246
AlwI	GGATC	1 cut(s)	247
AlwNI	CAGNNNCTG	2 cut(s)	347, 775
AoxI	GGCC	2 cut(s)	396, 1243
ApoI	RAATTY	4 cut(s)	214, 438, 561, 690
AseI	ATTAAT	2 cut(s)	803, 1163
AspS9I	GGNCC	1 cut(s)	882
AsuC2I	CCSGG	1 cut(s)	585
AsuHPI	GGTGA	5 cut(s)	88, 91, 205, 371, 373
AvaII	GGWCC	1 cut(s)	882
BanII	GRGCYC	1 cut(s)	957
BbsI	GAAGAC	1 cut(s)	311
Bbv12I	GWGCWC	1 cut(s)	137
BbvCI	CCTCAGC	1 cut(s)	335
BccI	CCATC	3 cut(s)	620, 703, 1322
BciT130I	CCWGG	4 cut(s)	120, 702, 776, 1221
BclI	TGATCA	1 cut(s)	1099
BcnI	CCSGG	1 cut(s)	585
BcoDI	GTCTC	1 cut(s)	246
BfaI	CTAG	1 cut(s)	1333
BfmI	CTRYAG	1 cut(s)	459
BmcAI	AGTACT	1 cut(s)	598
Bme1390I	CCNGG	5 cut(s)	120, 585, 702, 776, 1221
Bme18I	GGWCC	1 cut(s)	882
BmgT120I	GGNCC	1 cut(s)	882
BmiI	GGNNCC	3 cut(s)	478, 883, 1011
BmrFI	CCNGG	5 cut(s)	120, 585, 702, 776, 1221
BmsI	GCATC	6 cut(s)	40, 378, 542, 1080, 1085, 1109
BpiI	GAAGAC	1 cut(s)	311
BplI	GAGNNNNNCTC	2 cut(s)	226, 258
BpmI	CTGGAG	1 cut(s)	684
Bpu10I	CCTNAGC	2 cut(s)	335, 481
BpuEI	CTTGAG	2 cut(s)	554, 1098
BpuMI	CCSGG	1 cut(s)	585
BsaJI	CCNNGG	3 cut(s)	118, 351, 1219
Bsc4I	CCNNNNNNNGG	4 cut(s)	209, 701, 723, 781
BseBI	CCWGG	4 cut(s)	120, 702, 776, 1221
BseDI	CCNNGG	3 cut(s)	118, 351, 1219
BseGI	GGATG	2 cut(s)	229, 1124
BseLI	CCNNNNNNNGG	4 cut(s)	209, 701, 723, 781
BseMII	CTCAG	3 cut(s)	17, 326, 713
BseRI	GAGGAG	3 cut(s)	639, 739, 1284
BsgI	GTGCAG	1 cut(s)	1073
BshFI	GGCC	2 cut(s)	398, 1245
BsiHKAI	GWGCWC	1 cut(s)	137
BsiSI	CCGG	1 cut(s)	584
BslFI	GGGAC	2 cut(s)	260, 895
BslI	CCNNNNNNNGG	4 cut(s)	209, 701, 723, 781
BsmAI	GTCTC	1 cut(s)	246
BsmFI	GGGAC	2 cut(s)	260, 895
BsnI	GGCC	2 cut(s)	398, 1245
Bsp1286I	GDGCHC	2 cut(s)	137, 957
Bsp143I	GATC	3 cut(s)	252, 853, 1099
BspANI	GGCC	2 cut(s)	398, 1245
BspCNI	CTCAG	3 cut(s)	18, 327, 714
BspLI	GGNNCC	3 cut(s)	478, 883, 1011
BspMAI	CTGCAG	1 cut(s)	463
BspPI	GGATC	1 cut(s)	247
BssECI	CCNNGG	3 cut(s)	118, 351, 1219
BssMI	GATC	3 cut(s)	252, 853, 1099
BssNAI	GTATAC	1 cut(s)	1064
BssT1I	CCWWGG	1 cut(s)	351
Bst1107I	GTATAC	1 cut(s)	1064
Bst2UI	CCWGG	4 cut(s)	120, 702, 776, 1221
Bst4CI	ACNGT	4 cut(s)	46, 190, 343, 596
Bst6I	CTCTTC	1 cut(s)	249
BstAPI	GCANNNNNTGC	1 cut(s)	375
BstC8I	GCNNGC	6 cut(s)	67, 108, 581, 791, 795, 945
BstDEI	CTNAG	4 cut(s)	26, 335, 481, 722
BstENI	CCTNNNNNAGG	1 cut(s)	779
BstF5I	GGATG	2 cut(s)	229, 1124
BstKTI	GATC	3 cut(s)	255, 856, 1102
BstMAI	GTCTC	1 cut(s)	246
BstMBI	GATC	3 cut(s)	252, 853, 1099
BstMWI	GCNNNNNNNGC	7 cut(s)	290, 375, 395, 530, 585, 904, 1128
BstNI	CCWGG	4 cut(s)	120, 702, 776, 1221
BstNSI	RCATGY	1 cut(s)	793
BstSCI	CCNGG	5 cut(s)	118, 583, 700, 774, 1219
BstSFI	CTRYAG	1 cut(s)	459
BstV2I	GAAGAC	1 cut(s)	311
BstXI	CCANNNNNNTGG	1 cut(s)	1321
BstZ17I	GTATAC	1 cut(s)	1064
BsuRI	GGCC	2 cut(s)	398, 1245
BtgZI	GCGATG	4 cut(s)	185, 603, 666, 1057
BtsCI	GGATG	2 cut(s)	229, 1124
BtsI	GCAGTG	1 cut(s)	501
BtsIMutI	CAGTG	2 cut(s)	51, 501
Cac8I	GCNNGC	6 cut(s)	67, 108, 581, 791, 795, 945
CaiI	CAGNNNCTG	2 cut(s)	347, 775
Cfr13I	GGNCC	1 cut(s)	882
Csp6I	GTAC	2 cut(s)	597, 629
CviAII	CATG	6 cut(s)	56, 73, 103, 556, 790, 904
CviQI	GTAC	2 cut(s)	597, 629
DdeI	CTNAG	4 cut(s)	26, 335, 481, 722
DpnI	GATC	3 cut(s)	254, 855, 1101
DpnII	GATC	3 cut(s)	252, 853, 1099
EaeI	YGGCCR	1 cut(s)	396
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Eco130I	CCWWGG	1 cut(s)	351
Eco24I	GRGCYC	1 cut(s)	957
Eco32I	GATATC	2 cut(s)	97, 876
Eco47I	GGWCC	1 cut(s)	882
Eco57I	CTGAAG	2 cut(s)	1210, 1218
EcoNI	CCTNNNNNAGG	1 cut(s)	779
EcoRI	GAATTC	1 cut(s)	438
EcoRII	CCWGG	4 cut(s)	118, 700, 774, 1219
EcoRV	GATATC	2 cut(s)	97, 876
EcoT14I	CCWWGG	1 cut(s)	351
EcoT22I	ATGCAT	1 cut(s)	1124
EcoT38I	GRGCYC	1 cut(s)	957
ErhI	CCWWGG	1 cut(s)	351
FaeI	CATG	6 cut(s)	59, 76, 106, 559, 793, 907
FalI	AAGNNNNNCTT	4 cut(s)	296, 328, 563, 595
FaqI	GGGAC	2 cut(s)	260, 895
FatI	CATG	6 cut(s)	55, 72, 102, 555, 789, 903
FbaI	TGATCA	1 cut(s)	1099
FblI	GTMKAC	2 cut(s)	657, 1063
FokI	GGATG	2 cut(s)	236, 1131
FriOI	GRGCYC	1 cut(s)	957
FspBI	CTAG	1 cut(s)	1333
GsuI	CTGGAG	1 cut(s)	684
HaeIII	GGCC	2 cut(s)	398, 1245
HapII	CCGG	1 cut(s)	584
Hin1II	CATG	6 cut(s)	59, 76, 106, 559, 793, 907
HindIII	AAGCTT	3 cut(s)	67, 310, 795
HinfI	GANTC	7 cut(s)	79, 199, 736, 841, 1024, 1092, 1325
HpaII	CCGG	1 cut(s)	584
HphI	GGTGA	5 cut(s)	88, 91, 205, 371, 373
Hpy166II	GTNNAC	2 cut(s)	658, 1064
Hpy188I	TCNGA	5 cut(s)	223, 412, 771, 1198, 1272
Hpy188III	TCNNGA	3 cut(s)	125, 250, 616
Hpy8I	GTNNAC	2 cut(s)	658, 1064
HpyAV	CCTTC	4 cut(s)	356, 641, 772, 1273
HpyCH4III	ACNGT	4 cut(s)	46, 190, 343, 596
HpyF10VI	GCNNNNNNNGC	7 cut(s)	290, 375, 395, 530, 585, 904, 1128
HpyF3I	CTNAG	4 cut(s)	26, 335, 481, 722
Hsp92II	CATG	6 cut(s)	59, 76, 106, 559, 793, 907
Ksp22I	TGATCA	1 cut(s)	1099
Kzo9I	GATC	3 cut(s)	252, 853, 1099
LmnI	GCTCC	2 cut(s)	140, 1142
LweI	GCATC	6 cut(s)	40, 378, 542, 1080, 1085, 1109
MaeI	CTAG	1 cut(s)	1333
MaeIII	GTNAC	2 cut(s)	343, 741
MalI	GATC	3 cut(s)	254, 855, 1101
MboI	GATC	3 cut(s)	252, 853, 1099
MboII	GAAGA	3 cut(s)	236, 316, 1211
MfeI	CAATTG	1 cut(s)	948
MhlI	GDGCHC	2 cut(s)	137, 957
MluCI	AATT	7 cut(s)	207, 214, 438, 561, 690, 948, 1164
MlyI	GAGTC	3 cut(s)	193, 1018, 1086
MmeI	TCCRAC	2 cut(s)	201, 1069
Mph1103I	ATGCAT	1 cut(s)	1124
MseI	TTAA	5 cut(s)	684, 803, 815, 984, 1163
MslI	CAYNNNNRTG	3 cut(s)	469, 908, 1319
MspA1I	CMGCKG	1 cut(s)	895
MspI	CCGG	1 cut(s)	584
MspR9I	CCNGG	5 cut(s)	120, 585, 702, 776, 1221
MunI	CAATTG	1 cut(s)	948
MvaI	CCWGG	4 cut(s)	120, 702, 776, 1221
MwoI	GCNNNNNNNGC	7 cut(s)	290, 375, 395, 530, 585, 904, 1128
NciI	CCSGG	1 cut(s)	585
NdeII	GATC	3 cut(s)	252, 853, 1099
NlaIII	CATG	6 cut(s)	59, 76, 106, 559, 793, 907
NlaIV	GGNNCC	3 cut(s)	478, 883, 1011
NmuCI	GTSAC	1 cut(s)	741
NsiI	ATGCAT	1 cut(s)	1124
NspI	RCATGY	1 cut(s)	793
PaeI	GCATGC	1 cut(s)	793
PcsI	WCGNNNNNNNCGW	1 cut(s)	668
PfeI	GAWTC	4 cut(s)	79, 736, 841, 1325
PflMI	CCANNNNNTGG	1 cut(s)	209
PfoI	TCCNGGA	1 cut(s)	700
PleI	GAGTC	3 cut(s)	193, 1018, 1086
PpsI	GAGTC	3 cut(s)	193, 1018, 1086
PshBI	ATTAAT	2 cut(s)	803, 1163
Psp6I	CCWGG	4 cut(s)	118, 700, 774, 1219
PspGI	CCWGG	4 cut(s)	118, 700, 774, 1219
PspN4I	GGNNCC	3 cut(s)	478, 883, 1011
PspPI	GGNCC	1 cut(s)	882
PstI	CTGCAG	1 cut(s)	463
PstNI	CAGNNNCTG	2 cut(s)	347, 775
PvuII	CAGCTG	1 cut(s)	895
RsaI	GTAC	2 cut(s)	598, 630
RsaNI	GTAC	2 cut(s)	597, 629
RseI	CAYNNNNRTG	3 cut(s)	469, 908, 1319
SaqAI	TTAA	5 cut(s)	684, 803, 815, 984, 1163
Sau3AI	GATC	3 cut(s)	252, 853, 1099
Sau96I	GGNCC	1 cut(s)	882
ScaI	AGTACT	1 cut(s)	598
SchI	GAGTC	3 cut(s)	193, 1018, 1086
ScrFI	CCNGG	5 cut(s)	120, 585, 702, 776, 1221
SduI	GDGCHC	2 cut(s)	137, 957
SfaNI	GCATC	6 cut(s)	40, 378, 542, 1080, 1085, 1109
SfcI	CTRYAG	1 cut(s)	459
SinI	GGWCC	1 cut(s)	882
SmiMI	CAYNNNNRTG	3 cut(s)	469, 908, 1319
SmlI	CTYRAG	2 cut(s)	569, 1113
SmoI	CTYRAG	2 cut(s)	569, 1113
SphI	GCATGC	1 cut(s)	793
Sse9I	AATT	7 cut(s)	207, 214, 438, 561, 690, 948, 1164
SspMI	CTAG	1 cut(s)	1333
StyD4I	CCNGG	5 cut(s)	118, 583, 700, 774, 1219
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	4 cut(s)	46, 190, 343, 596
TasI	AATT	7 cut(s)	207, 214, 438, 561, 690, 948, 1164
TatI	WGTACW	1 cut(s)	596
TfiI	GAWTC	4 cut(s)	79, 736, 841, 1325
Tru1I	TTAA	5 cut(s)	684, 803, 815, 984, 1163
Tru9I	TTAA	5 cut(s)	684, 803, 815, 984, 1163
TscAI	CASTG	2 cut(s)	51, 508
TseFI	GTSAC	1 cut(s)	741
Tsp45I	GTSAC	1 cut(s)	741
TspDTI	ATGAA	6 cut(s)	61, 660, 789, 892, 984, 986
TspRI	CASTG	2 cut(s)	51, 508
Van91I	CCANNNNNTGG	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	882
VspI	ATTAAT	2 cut(s)	803, 1163
XagI	CCTNNNNNAGG	1 cut(s)	779
XapI	RAATTY	4 cut(s)	214, 438, 561, 690
XceI	RCATGY	1 cut(s)	793
XmiI	GTMKAC	2 cut(s)	657, 1063
XspI	CTAG	1 cut(s)	1333
ZrmI	AGTACT	1 cut(s)	598
Zsp2I	ATGCAT	1 cut(s)	1124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.