Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002080.1

Orthogroup ID

OG0001419

Physical Location & Seq

Genomic Coordinates Reverse (-)

36372 .. 39883

Gene Structure 3512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002080.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

atgctccaactgtgcattgcagcacaatgcctggccactttgacaacttcggggttcgaacctagggaaacccaaaggcttcttaggcctaagataaaccccttcggcgcatgtgaaatgctccagctgtgcattgcagcacaatgcctggccactttgacaacttcggggttcgaacctagccgggagaccaactttttctatgctttctatgtgctgaggacactaactgccatgacatgcgaaggcagtgtcaactgcctcgccctcgcttatgtggcagacaacatttcagagagagagagagtatctgcatttggacttctatctgggtttttctccgcatcatttgtatgtggaactttagcagctcgtttcctccccacttcgttaacatttcaggttgccgccttagtatcaatgctggcagctgtttacatgaggatttttctcgaggaaattaggccatcagatcatggggatagtactttgaaacagcctatcttgaagggattagaaccagtactagagcgaatcacagatgacgattactctccgaagacgaaaattgaatttaagaagatcccatctgttggggatcttattagcttactcaggagtagtaagaccctgtcacaagctggtattattatcttctttcagagcctagcagaaggtggcatgcaagcttcggtcctgtatttccttaaggctcgttttcagttcgacaaaaatcagtttgctgatataatgctgattatggggatatcaggagccataacacagatgattttcatgcccatgatggcacctaaaatcggagaggaaaagatgctgtcaattgggctctcactcaactgtatcagtatgtttctaaacagtatagcatggtcaccttgggttccttatgcagctactgtgttttcttcttttgccttactagcacaaccaactatacgcagcattgcatcaaaacaagttggaccaaatgagcagggaaaggctcaaggatgcatttcaggcataagttcctttgccaacattgttgctccattagttttcagtcctttaacagctttatttttgtctgaagatgcaccgttcaatttccctggcttcagtattatgtgccttggacttgcaacgatcattgccttaattcagagtacaatgataagggcttctcctcctatttcaagtcacaatttagcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

404

Amino Acids

43.93

Weight (kDa)

7.44

Isoelectric Point (pI)

44.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16970 AT2G16970 AT2G16970 AT2G16970 AT2G16970 AT2G16970 AT2G16970 AT2G16970 AT2G16980 AT2G16980 AT2G16980 AT2G16980 AT2G16980 AT2G16980 AT2G16990 AT2G16990 AT2G16990 AT2G16990 AT2G16990 AT2G16990 AT2G16990 AT2G16990
fragaria_vesca	FvH4_2g15722 FvH4_2g15730 FvH4_2g15730 FvH4_2g15730 FvH4_2g15730 FvH4_2g15730
malus_domestica	MD05G1126300.v1.1 MD10G1129100.v1.1
prunus_persica	Prupe.8G169700_v2.0.a1 Prupe.8G169700_v2.0.a1 Prupe.8G169700_v2.0.a1
pyrus_communis	pycom05g12210 pycom10g11070
rosa_chinensis	RchiOBHm_Chr6g0279031 RchiOBHm_Chr6g0279041
rosa_laevigata	RLG00000013171
rosa_multiflora	Rmu_sc0002080.1_g000008 Rmu_sc0002080.1_g000013
rosa_roxburghii	Rroxscaffold_7G00189190
rosa_rugosa	Rorug06G0121300 Rorug06G0121400.1 Rorug06G0121500 Rorug06G0121600
rosa_samantha	Rh6AG230600 Rh6BG235400 Rh6CG237400 Rh6DG229200
rosa_wichuraiana	Rw0G017030 Rw0G021110 Rw6G020180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	808
AccB7I	CCANNNNNTGG	1 cut(s)	593
AciI	CCGC	2 cut(s)	342, 408
AclWI	GGATC	2 cut(s)	577, 606
AcoI	YGGCCR	2 cut(s)	33, 150
AcsI	RAATTY	1 cut(s)	572
AcuI	CTGAAG	2 cut(s)	1102, 1110
AfaI	GTAC	3 cut(s)	487, 525, 1168
AfiI	CCNNNNNNNGG	2 cut(s)	593, 818
AflII	CTTAAG	1 cut(s)	707
AgsI	TTSAA	5 cut(s)	493, 508, 572, 1105, 1197
AjnI	CCWGG	3 cut(s)	30, 147, 1111
AluBI	AGCT	8 cut(s)	127, 371, 431, 609, 641, 689, 914, 1076
AluI	AGCT	8 cut(s)	127, 371, 431, 609, 641, 689, 914, 1076
Alw26I	GTCTC	1 cut(s)	182
AlwI	GGATC	2 cut(s)	577, 606
AlwNI	CAGNNNCTG	1 cut(s)	917
Ama87I	CYCGRG	1 cut(s)	452
AoxI	GGCC	4 cut(s)	33, 86, 150, 464
ApeKI	GCWGC	6 cut(s)	20, 137, 368, 428, 911, 960
ApoI	RAATTY	1 cut(s)	572
ArsI	GACNNNNNNTTYG	2 cut(s)	237, 269
AspA2I	CCTAGG	1 cut(s)	62
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	2 cut(s)	694, 983
AsuC2I	CCSGG	1 cut(s)	185
AsuHPI	GGTGA	1 cut(s)	885
AsuII	TTCGAA	2 cut(s)	57, 174
AvaI	CYCGRG	1 cut(s)	452
AvaII	GGWCC	2 cut(s)	694, 983
AvrII	CCTAGG	1 cut(s)	62
BalI	TGGCCA	2 cut(s)	35, 152
BanI	GGYRCC	1 cut(s)	808
BanII	GRGCYC	1 cut(s)	849
BbsI	GAAGAC	1 cut(s)	566
BbvCI	CCTCAGC	1 cut(s)	218
BbvI	GCAGC	6 cut(s)	32, 149, 380, 440, 923, 972
BccI	CCATC	3 cut(s)	475, 595, 799
BciT130I	CCWGG	3 cut(s)	32, 149, 1113
BcnI	CCSGG	1 cut(s)	185
BcoDI	GTCTC	1 cut(s)	182
BfaI	CTAG	6 cut(s)	63, 180, 527, 668, 941, 1213
BfrI	CTTAAG	1 cut(s)	707
BisI	GCNGC	7 cut(s)	21, 138, 369, 408, 429, 912, 961
BlnI	CCTAGG	1 cut(s)	62
BlsI	GCNGC	7 cut(s)	22, 139, 370, 409, 430, 913, 962
BmcAI	AGTACT	2 cut(s)	487, 525
Bme1390I	CCNGG	4 cut(s)	32, 149, 185, 1113
Bme18I	GGWCC	2 cut(s)	694, 983
BmeT110I	CYCGRG	1 cut(s)	452
BmgT120I	GGNCC	2 cut(s)	694, 983
BmiI	GGNNCC	3 cut(s)	775, 810, 903
BmrFI	CCNGG	4 cut(s)	32, 149, 185, 1113
BmsI	GCATC	5 cut(s)	353, 822, 977, 1001, 1084
BpiI	GAAGAC	1 cut(s)	566
BpmI	CTGGAG	1 cut(s)	107
Bpu10I	CCTNAGC	1 cut(s)	218
Bpu14I	TTCGAA	2 cut(s)	57, 174
BpuEI	CTTGAG	1 cut(s)	990
BpuMI	CCSGG	1 cut(s)	185
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	4 cut(s)	62, 896, 1111, 1132
Bsc4I	CCNNNNNNNGG	2 cut(s)	593, 818
Bse1I	ACTGG	1 cut(s)	521
Bse3DI	GCAATG	4 cut(s)	15, 132, 963, 1149
BseBI	CCWGG	3 cut(s)	32, 149, 1113
BseDI	CCNNGG	4 cut(s)	62, 896, 1111, 1132
BseGI	GGATG	1 cut(s)	1016
BseLI	CCNNNNNNNGG	2 cut(s)	593, 818
BseMI	GCAATG	4 cut(s)	15, 132, 963, 1149
BseMII	CTCAG	2 cut(s)	209, 628
BseNI	ACTGG	1 cut(s)	521
BseRI	GAGGAG	1 cut(s)	1176
BseXI	GCAGC	6 cut(s)	32, 149, 380, 440, 923, 972
BshFI	GGCC	4 cut(s)	35, 88, 152, 466
BshNI	GGYRCC	1 cut(s)	808
BsiHKCI	CYCGRG	1 cut(s)	452
BsiSI	CCGG	1 cut(s)	184
BslI	CCNNNNNNNGG	2 cut(s)	593, 818
BsmAI	GTCTC	1 cut(s)	182
BsnI	GGCC	4 cut(s)	35, 88, 152, 466
Bso31I	GGTCTC	1 cut(s)	182
BsoBI	CYCGRG	1 cut(s)	452
Bsp119I	TTCGAA	2 cut(s)	57, 174
Bsp1286I	GDGCHC	1 cut(s)	849
Bsp143I	GATC	4 cut(s)	472, 582, 598, 1146
BspACI	CCGC	2 cut(s)	342, 408
BspANI	GGCC	4 cut(s)	35, 88, 152, 466
BspCNI	CTCAG	2 cut(s)	210, 627
BspLI	GGNNCC	3 cut(s)	775, 810, 903
BspPI	GGATC	2 cut(s)	577, 606
BspT104I	TTCGAA	2 cut(s)	57, 174
BspT107I	GGYRCC	1 cut(s)	808
BspTI	CTTAAG	1 cut(s)	707
BspTNI	GGTCTC	1 cut(s)	182
BsrDI	GCAATG	4 cut(s)	15, 132, 963, 1149
BsrI	ACTGG	1 cut(s)	521
BssECI	CCNNGG	4 cut(s)	62, 896, 1111, 1132
BssMI	GATC	4 cut(s)	472, 582, 598, 1146
BssT1I	CCWWGG	3 cut(s)	62, 896, 1132
Bst2UI	CCWGG	3 cut(s)	32, 149, 1113
Bst4CI	ACNGT	5 cut(s)	12, 860, 881, 919, 1101
BstAFI	CTTAAG	1 cut(s)	707
BstBI	TTCGAA	2 cut(s)	57, 174
BstC8I	GCNNGC	3 cut(s)	426, 683, 687
BstDEI	CTNAG	5 cut(s)	83, 90, 218, 412, 614
BstEII	GGTNACC	1 cut(s)	891
BstF5I	GGATG	1 cut(s)	1016
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	4 cut(s)	475, 585, 601, 1149
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	4 cut(s)	472, 582, 598, 1146
BstMWI	GCNNNNNNNGC	4 cut(s)	85, 278, 941, 1020
BstNI	CCWGG	3 cut(s)	32, 149, 1113
BstNSI	RCATGY	3 cut(s)	114, 243, 685
BstPI	GGTNACC	1 cut(s)	891
BstSCI	CCNGG	4 cut(s)	30, 147, 183, 1111
BstV1I	GCAGC	6 cut(s)	32, 149, 380, 440, 923, 972
BstV2I	GAAGAC	1 cut(s)	566
BstX2I	RGATCY	2 cut(s)	582, 598
BstYI	RGATCY	2 cut(s)	582, 598
BsuRI	GGCC	4 cut(s)	35, 88, 152, 466
BtsCI	GGATG	1 cut(s)	1016
BtsI	GCAGTG	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	256
Cac8I	GCNNGC	3 cut(s)	426, 683, 687
CaiI	CAGNNNCTG	1 cut(s)	917
CfoI	GCGC	1 cut(s)	110
Cfr13I	GGNCC	2 cut(s)	694, 983
Csp6I	GTAC	3 cut(s)	486, 524, 1167
CviAII	CATG	9 cut(s)	111, 235, 240, 439, 476, 682, 796, 802, 888
CviQI	GTAC	3 cut(s)	486, 524, 1167
DdeI	CTNAG	5 cut(s)	83, 90, 218, 412, 614
DpnI	GATC	4 cut(s)	474, 584, 600, 1148
DpnII	GATC	4 cut(s)	472, 582, 598, 1146
EaeI	YGGCCR	2 cut(s)	33, 150
Eco130I	CCWWGG	3 cut(s)	62, 896, 1132
Eco147I	AGGCCT	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	849
Eco31I	GGTCTC	1 cut(s)	182
Eco32I	GATATC	1 cut(s)	768
Eco47I	GGWCC	2 cut(s)	694, 983
Eco57I	CTGAAG	2 cut(s)	1102, 1110
Eco88I	CYCGRG	1 cut(s)	452
Eco91I	GGTNACC	1 cut(s)	891
EcoO65I	GGTNACC	1 cut(s)	891
EcoRII	CCWGG	3 cut(s)	30, 147, 1111
EcoRV	GATATC	1 cut(s)	768
EcoT14I	CCWWGG	3 cut(s)	62, 896, 1132
EcoT22I	ATGCAT	1 cut(s)	1016
EcoT38I	GRGCYC	1 cut(s)	849
ErhI	CCWWGG	3 cut(s)	62, 896, 1132
FaeI	CATG	9 cut(s)	114, 238, 243, 442, 479, 685, 799, 805, 891
FatI	CATG	9 cut(s)	110, 234, 239, 438, 475, 681, 795, 801, 887
Fnu4HI	GCNGC	7 cut(s)	21, 138, 369, 408, 429, 912, 961
FokI	GGATG	1 cut(s)	1023
FriOI	GRGCYC	1 cut(s)	849
Fsp4HI	GCNGC	7 cut(s)	21, 138, 369, 408, 429, 912, 961
FspBI	CTAG	6 cut(s)	63, 180, 527, 668, 941, 1213
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	7 cut(s)	21, 138, 369, 408, 429, 912, 961
GsuI	CTGGAG	1 cut(s)	107
HaeIII	GGCC	4 cut(s)	35, 88, 152, 466
HapII	CCGG	1 cut(s)	184
HhaI	GCGC	1 cut(s)	110
Hin1II	CATG	9 cut(s)	114, 238, 243, 442, 479, 685, 799, 805, 891
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HincII	GTYRAC	2 cut(s)	256, 393
HindII	GTYRAC	2 cut(s)	256, 393
HindIII	AAGCTT	1 cut(s)	687
HinfI	GANTC	1 cut(s)	534
HpaI	GTTAAC	1 cut(s)	393
HpaII	CCGG	1 cut(s)	184
HphI	GGTGA	1 cut(s)	885
Hpy166II	GTNNAC	3 cut(s)	256, 393, 436
Hpy188I	TCNGA	7 cut(s)	295, 472, 558, 663, 821, 1090, 1164
Hpy188III	TCNNGA	4 cut(s)	452, 505, 616, 771
Hpy8I	GTNNAC	3 cut(s)	256, 393, 436
HpyAV	CCTTC	4 cut(s)	112, 239, 502, 668
HpyCH4III	ACNGT	5 cut(s)	12, 860, 881, 919, 1101
HpyF10VI	GCNNNNNNNGC	4 cut(s)	85, 278, 941, 1020
HpyF3I	CTNAG	5 cut(s)	83, 90, 218, 412, 614
Hsp92II	CATG	9 cut(s)	114, 238, 243, 442, 479, 685, 799, 805, 891
HspAI	GCGC	1 cut(s)	108
KspAI	GTTAAC	1 cut(s)	393
Kzo9I	GATC	4 cut(s)	472, 582, 598, 1146
LmnI	GCTCC	4 cut(s)	9, 126, 773, 1054
Lsp1109I	GCAGC	6 cut(s)	32, 149, 380, 440, 923, 972
LweI	GCATC	5 cut(s)	353, 822, 977, 1001, 1084
MaeI	CTAG	6 cut(s)	63, 180, 527, 668, 941, 1213
MaeIII	GTNAC	3 cut(s)	633, 891, 1199
MalI	GATC	4 cut(s)	474, 584, 600, 1148
MboI	GATC	4 cut(s)	472, 582, 598, 1146
MboII	GAAGA	5 cut(s)	571, 592, 646, 918, 1103
MfeI	CAATTG	1 cut(s)	840
MflI	RGATCY	2 cut(s)	582, 598
MhlI	GDGCHC	1 cut(s)	849
MlsI	TGGCCA	2 cut(s)	35, 152
MluCI	AATT	7 cut(s)	459, 567, 572, 840, 1105, 1158, 1204
MluNI	TGGCCA	2 cut(s)	35, 152
MmeI	TCCRAC	2 cut(s)	31, 961
MnlI	CCTC	8 cut(s)	213, 272, 278, 389, 435, 448, 817, 1197
Mox20I	TGGCCA	2 cut(s)	35, 152
Mph1103I	ATGCAT	1 cut(s)	1016
MscI	TGGCCA	2 cut(s)	35, 152
MseI	TTAA	5 cut(s)	392, 576, 708, 1070, 1157
MslI	CAYNNNNRTG	2 cut(s)	352, 800
Msp20I	TGGCCA	2 cut(s)	35, 152
MspA1I	CMGCKG	2 cut(s)	127, 431
MspCI	CTTAAG	1 cut(s)	707
MspI	CCGG	1 cut(s)	184
MspR9I	CCNGG	4 cut(s)	32, 149, 185, 1113
MunI	CAATTG	1 cut(s)	840
MvaI	CCWGG	3 cut(s)	32, 149, 1113
MwoI	GCNNNNNNNGC	4 cut(s)	85, 278, 941, 1020
NciI	CCSGG	1 cut(s)	185
NdeII	GATC	4 cut(s)	472, 582, 598, 1146
NlaIII	CATG	9 cut(s)	114, 238, 243, 442, 479, 685, 799, 805, 891
NlaIV	GGNNCC	3 cut(s)	775, 810, 903
NmuCI	GTSAC	3 cut(s)	633, 891, 1199
NsiI	ATGCAT	1 cut(s)	1016
NspI	RCATGY	3 cut(s)	114, 243, 685
NspV	TTCGAA	2 cut(s)	57, 174
PaeI	GCATGC	1 cut(s)	685
PaeR7I	CTCGAG	1 cut(s)	452
PceI	AGGCCT	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	534
PflFI	GACNNNGTC	1 cut(s)	631
PflMI	CCANNNNNTGG	1 cut(s)	593
PkrI	GCNGC	7 cut(s)	22, 139, 370, 409, 430, 913, 962
Psp6I	CCWGG	3 cut(s)	30, 147, 1111
PspEI	GGTNACC	1 cut(s)	891
PspGI	CCWGG	3 cut(s)	30, 147, 1111
PspN4I	GGNNCC	3 cut(s)	775, 810, 903
PspPI	GGNCC	2 cut(s)	694, 983
PstNI	CAGNNNCTG	1 cut(s)	917
PsuI	RGATCY	2 cut(s)	582, 598
PsyI	GACNNNGTC	1 cut(s)	631
PvuII	CAGCTG	2 cut(s)	127, 431
RsaI	GTAC	3 cut(s)	487, 525, 1168
RsaNI	GTAC	3 cut(s)	486, 524, 1167
RseI	CAYNNNNRTG	2 cut(s)	352, 800
SaqAI	TTAA	5 cut(s)	392, 576, 708, 1070, 1157
SatI	GCNGC	7 cut(s)	21, 138, 369, 408, 429, 912, 961
Sau3AI	GATC	4 cut(s)	472, 582, 598, 1146
Sau96I	GGNCC	2 cut(s)	694, 983
ScaI	AGTACT	2 cut(s)	487, 525
ScrFI	CCNGG	4 cut(s)	32, 149, 185, 1113
SduI	GDGCHC	1 cut(s)	849
SfaNI	GCATC	5 cut(s)	353, 822, 977, 1001, 1084
Sfr274I	CTCGAG	1 cut(s)	452
SfuI	TTCGAA	2 cut(s)	57, 174
SinI	GGWCC	2 cut(s)	694, 983
SlaI	CTCGAG	1 cut(s)	452
SmiMI	CAYNNNNRTG	2 cut(s)	352, 800
SmlI	CTYRAG	3 cut(s)	452, 707, 1005
SmoI	CTYRAG	3 cut(s)	452, 707, 1005
SphI	GCATGC	1 cut(s)	685
Sse9I	AATT	7 cut(s)	459, 567, 572, 840, 1105, 1158, 1204
SseBI	AGGCCT	1 cut(s)	88
SsiI	CCGC	2 cut(s)	342, 408
SspMI	CTAG	6 cut(s)	63, 180, 527, 668, 941, 1213
StuI	AGGCCT	1 cut(s)	88
StyD4I	CCNGG	4 cut(s)	30, 147, 183, 1111
StyI	CCWWGG	3 cut(s)	62, 896, 1132
TaaI	ACNGT	5 cut(s)	12, 860, 881, 919, 1101
TaqI	TCGA	4 cut(s)	57, 174, 453, 726
TaqII	GACCGA	1 cut(s)	682
TasI	AATT	7 cut(s)	459, 567, 572, 840, 1105, 1158, 1204
TatI	WGTACW	3 cut(s)	485, 523, 1166
TauI	GCSGC	1 cut(s)	410
TfiI	GAWTC	1 cut(s)	534
Tru1I	TTAA	5 cut(s)	392, 576, 708, 1070, 1157
Tru9I	TTAA	5 cut(s)	392, 576, 708, 1070, 1157
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	3 cut(s)	633, 891, 1199
TseI	GCWGC	6 cut(s)	20, 137, 368, 428, 911, 960
Tsp45I	GTSAC	3 cut(s)	633, 891, 1199
TspDTI	ATGAA	1 cut(s)	784
TspRI	CASTG	1 cut(s)	256
Tth111I	GACNNNGTC	1 cut(s)	631
Van91I	CCANNNNNTGG	1 cut(s)	593
Vha464I	CTTAAG	1 cut(s)	707
VpaK11BI	GGWCC	2 cut(s)	694, 983
XapI	RAATTY	1 cut(s)	572
XceI	RCATGY	3 cut(s)	114, 243, 685
XhoI	CTCGAG	1 cut(s)	452
XmaJI	CCTAGG	1 cut(s)	62
XspI	CTAG	6 cut(s)	63, 180, 527, 668, 941, 1213
ZrmI	AGTACT	2 cut(s)	487, 525
Zsp2I	ATGCAT	1 cut(s)	1016

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.