RchiOBHm_Chr6g0279041

Hippocampus abundant

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001419
Physical Location & Seq
Forward (+)
42251471 .. 42253242
1772 bp
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UTR
Exon/CDS
Intron
PRQ25029

Sequence Viewer

Length: 435 bp
ATGCAGATGATTTTCATGCCCATGATGGCACCTAAAATGGGAGAGGAAAAGATGCTGTCAATTGGGCTCTCACTGAACTGTATCAGTATGTTTCTAAACAGTATAGCGTGGTCACCTTGGGTTCCTTATGCAGCTACTGTGTTTTCTTCTTTTGCCTTACTAGCACAACCAACTATACGCAGCATTGCATCAAAACAAGTTGGACCAAATGAGCAGGGAAAGGCTCAAGGATGCATTTCAGGCATAAGTTCCTTTGCCAACATTGTTGCTCCATTAGTTTTCAGTCCTTTAACAGCTTTATTTTTGTCTGAAGATGCACCGTTCAATTTCCCAGGCTTCAGTATTATGTGCCTTGGACTTGCAACGATCATTGCCTTGATTCAGAGTACAATGATAAGGGCTTCTCCTCCTATTGCAAGTCACAATTTAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1

Protein Analysis

144

Amino Acids

15.37

Weight (kDa)

7.73

Isoelectric Point (pI)

55.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 5 - 126 1.5e-07 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 28
AcuI CTGAAG 2 cut(s) 322, 330
AfaI GTAC 1 cut(s) 388
AfiI CCNNNNNNNGG 1 cut(s) 38
AgsI TTSAA 1 cut(s) 325
AjnI CCWGG 1 cut(s) 331
AluBI AGCT 2 cut(s) 134, 296
AluI AGCT 2 cut(s) 134, 296
AlwNI CAGNNNCTG 1 cut(s) 137
ApeKI GCWGC 2 cut(s) 131, 180
AspS9I GGNCC 1 cut(s) 203
AsuHPI GGTGA 1 cut(s) 105
AvaII GGWCC 1 cut(s) 203
BanI GGYRCC 1 cut(s) 28
BanII GRGCYC 1 cut(s) 69
BbvI GCAGC 2 cut(s) 143, 192
BccI CCATC 1 cut(s) 19
BciT130I CCWGG 1 cut(s) 333
BfaI CTAG 2 cut(s) 161, 433
BisI GCNGC 2 cut(s) 132, 181
BlsI GCNGC 2 cut(s) 133, 182
Bme1390I CCNGG 1 cut(s) 333
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 2 cut(s) 30, 123
BmrFI CCNGG 1 cut(s) 333
BmsI GCATC 4 cut(s) 42, 197, 221, 304
BpuEI CTTGAG 1 cut(s) 210
BsaJI CCNNGG 3 cut(s) 116, 331, 352
Bsc4I CCNNNNNNNGG 1 cut(s) 38
Bse3DI GCAATG 2 cut(s) 183, 369
BseBI CCWGG 1 cut(s) 333
BseDI CCNNGG 3 cut(s) 116, 331, 352
BseGI GGATG 1 cut(s) 236
BseLI CCNNNNNNNGG 1 cut(s) 38
BseMI GCAATG 2 cut(s) 183, 369
BseRI GAGGAG 1 cut(s) 396
BseXI GCAGC 2 cut(s) 143, 192
BshNI GGYRCC 1 cut(s) 28
BslI CCNNNNNNNGG 1 cut(s) 38
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 1 cut(s) 366
BspLI GGNNCC 2 cut(s) 30, 123
BspT107I GGYRCC 1 cut(s) 28
BsrDI GCAATG 2 cut(s) 183, 369
BssECI CCNNGG 3 cut(s) 116, 331, 352
BssMI GATC 1 cut(s) 366
BssT1I CCWWGG 2 cut(s) 116, 352
Bst2UI CCWGG 1 cut(s) 333
Bst4CI ACNGT 4 cut(s) 80, 101, 139, 321
BstEII GGTNACC 1 cut(s) 111
BstF5I GGATG 1 cut(s) 236
BstKTI GATC 1 cut(s) 369
BstMBI GATC 1 cut(s) 366
BstMWI GCNNNNNNNGC 2 cut(s) 161, 240
BstNI CCWGG 1 cut(s) 333
BstPI GGTNACC 1 cut(s) 111
BstSCI CCNGG 1 cut(s) 331
BstV1I GCAGC 2 cut(s) 143, 192
BtsCI GGATG 1 cut(s) 236
BtsIMutI CAGTG 1 cut(s) 71
CaiI CAGNNNCTG 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 203
Csp6I GTAC 1 cut(s) 387
CviAII CATG 2 cut(s) 16, 22
CviJI RGCY 7 cut(s) 67, 134, 224, 296, 336, 401, 431
CviKI_1 RGCY 7 cut(s) 67, 134, 224, 296, 336, 401, 431
CviQI GTAC 1 cut(s) 387
DpnI GATC 1 cut(s) 368
DpnII GATC 1 cut(s) 366
Eco130I CCWWGG 2 cut(s) 116, 352
Eco24I GRGCYC 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 203
Eco57I CTGAAG 2 cut(s) 322, 330
Eco91I GGTNACC 1 cut(s) 111
EcoO65I GGTNACC 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 331
EcoT14I CCWWGG 2 cut(s) 116, 352
EcoT22I ATGCAT 1 cut(s) 236
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 2 cut(s) 116, 352
FaeI CATG 2 cut(s) 19, 25
FaiI YATR 8 cut(s) 17, 23, 89, 104, 129, 176, 245, 347
FatI CATG 2 cut(s) 15, 21
Fnu4HI GCNGC 2 cut(s) 132, 181
FokI GGATG 1 cut(s) 243
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 2 cut(s) 132, 181
FspBI CTAG 2 cut(s) 161, 433
GluI GCNGC 2 cut(s) 132, 181
Hin1II CATG 2 cut(s) 19, 25
HinfI GANTC 1 cut(s) 379
HphI GGTGA 1 cut(s) 105
Hpy188I TCNGA 2 cut(s) 310, 384
HpyCH4III ACNGT 4 cut(s) 80, 101, 139, 321
HpyCH4V TGCA 7 cut(s) 4, 131, 188, 234, 317, 362, 416
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 240
Hsp92II CATG 2 cut(s) 19, 25
Kzo9I GATC 1 cut(s) 366
LmnI GCTCC 1 cut(s) 274
LpnPI CCDG 4 cut(s) 200, 225, 318, 345
Lsp1109I GCAGC 2 cut(s) 143, 192
LweI GCATC 4 cut(s) 42, 197, 221, 304
MaeI CTAG 2 cut(s) 161, 433
MaeIII GTNAC 2 cut(s) 111, 419
MalI GATC 1 cut(s) 368
MboI GATC 1 cut(s) 366
MboII GAAGA 2 cut(s) 138, 323
MfeI CAATTG 1 cut(s) 60
MhlI GDGCHC 1 cut(s) 69
MluCI AATT 3 cut(s) 60, 325, 424
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 2 cut(s) 37, 417
Mph1103I ATGCAT 1 cut(s) 236
MseI TTAA 1 cut(s) 290
MslI CAYNNNNRTG 1 cut(s) 20
MspR9I CCNGG 1 cut(s) 333
MunI CAATTG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 333
MwoI GCNNNNNNNGC 2 cut(s) 161, 240
NdeII GATC 1 cut(s) 366
NlaIII CATG 2 cut(s) 19, 25
NlaIV GGNNCC 2 cut(s) 30, 123
NmuCI GTSAC 2 cut(s) 111, 419
NsiI ATGCAT 1 cut(s) 236
PfeI GAWTC 1 cut(s) 379
PkrI GCNGC 2 cut(s) 133, 182
Psp6I CCWGG 1 cut(s) 331
PspEI GGTNACC 1 cut(s) 111
PspGI CCWGG 1 cut(s) 331
PspN4I GGNNCC 2 cut(s) 30, 123
PspPI GGNCC 1 cut(s) 203
PstNI CAGNNNCTG 1 cut(s) 137
RsaI GTAC 1 cut(s) 388
RsaNI GTAC 1 cut(s) 387
RseI CAYNNNNRTG 1 cut(s) 20
SaqAI TTAA 1 cut(s) 290
SatI GCNGC 2 cut(s) 132, 181
Sau3AI GATC 1 cut(s) 366
Sau96I GGNCC 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 333
SduI GDGCHC 1 cut(s) 69
SetI ASST 4 cut(s) 34, 118, 136, 298
SfaNI GCATC 4 cut(s) 42, 197, 221, 304
SinI GGWCC 1 cut(s) 203
SmiMI CAYNNNNRTG 1 cut(s) 20
SmlI CTYRAG 1 cut(s) 225
SmoI CTYRAG 1 cut(s) 225
Sse9I AATT 3 cut(s) 60, 325, 424
SspMI CTAG 2 cut(s) 161, 433
StyD4I CCNGG 1 cut(s) 331
StyI CCWWGG 2 cut(s) 116, 352
TaaI ACNGT 4 cut(s) 80, 101, 139, 321
TasI AATT 3 cut(s) 60, 325, 424
TatI WGTACW 1 cut(s) 386
TfiI GAWTC 1 cut(s) 379
Tru1I TTAA 1 cut(s) 290
Tru9I TTAA 1 cut(s) 290
TscAI CASTG 1 cut(s) 78
TseFI GTSAC 2 cut(s) 111, 419
TseI GCWGC 2 cut(s) 131, 180
Tsp45I GTSAC 2 cut(s) 111, 419
TspDTI ATGAA 1 cut(s) 4
TspRI CASTG 1 cut(s) 78
VpaK11BI GGWCC 1 cut(s) 203
XspI CTAG 2 cut(s) 161, 433
Zsp2I ATGCAT 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.