Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001419

Physical Location & Seq

Genomic Coordinates Forward (+)

40299511 .. 40311619

Gene Structure 12109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG237400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGTTTGTGATGCAGATCATAGGCATGGGAACGGTGGTGATGAATCCGGTAATTGGGAACCTGTCGGACCTCTATGGGAGGAAGGCTCTGCTCACATTCCCATTGACAGTATCCATTATCCCACTAGCAATATTGGCGTATAGCCGGGAGACCAACTTTTTCTATGCTTTCTATGTGCTGAGGACCCTAACTGCCATGACATGCGAAGGCAGTGTCAACTGCCTCGCCCTCGCTTATGTGGCAGACAACATTTCAGAGAGAGAGAGAGTATCTGCATTTGGACTTCTATCTGGGTTTTTCTCCGCATCATTTGTCTGTGGAACTTTAGCAGCTCGTTTCCTCCCCACTTCGTTAACATTTCAGGTTGCCGCCTTAGTATCAATGCTGGCAGCTGTTTACATGAGGATTTTTCTCGAGGAAATTAGGCCATCAGATCATGGGGATAGTACTTTGAGCCAGCCTATCTTGAAGGGATTAGAACCAGTACTAGAGCGAATCACAGATGACGATTACTCTCCGAAGACGAAAATTGAATTTAAGAAGATCCCATCTGTTGGGGATCTTATTAGCTTACTCAGGAGTAGTAAGACCCTGTCACAAGCTGGTATTATTATCTTCTTTCAGAGCCTAGCAGAAGGTGGCATGCAAGCTTCGGTCCTGTATTTCCTTAAGGCTCGTTTTCAGTTCGACAAAAATCAGTTTGCTGATATAATGCTGATTATGGGGATATCAGGAGCCATAACACAGATGATTTTCATGCCCATGATGGCACCTAAAATCGGAGAGGAAAAGATGCTGTCAATTGGGCTCTCACTGAACTGTATCAGTATGTTTCTAAACAGTATAGCGTGGTCACCTTGGGTTCCTTATGCAGCTACTGTGTTTTCTTCTTTTGCCTTACTAGCACAACCAACTATACGCAGCATTGCATCAAAACAAGTTGGACCAAATGAGCAGGGAAAGGCTCAAGGATGCATTTCAGGCATAAGTTCCTTTGCCAACATTGTTGCTCCATTAGTTTTCAGTCCTTTAACAGCTTTATTTTTGTCTGAAGATGCACCGTTCAATTTCCCTGGCTTCAGTATTATGTGCCTTGGACTTGCAACGATCATTGCCTTAATTCAGAGTACAATGATAAGGGCTTCTCCTCCTATTTCAAGTCACAATTTAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

391

Amino Acids

42.46

Weight (kDa)

7.55

Isoelectric Point (pI)

41.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	7 - 338	9.2e-31	Major Facilitator Superfamily
MFS_1	PF07690	204 - 373	5.9e-10	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16970 AT2G16970 AT2G16970 AT2G16970 AT2G16970 AT2G16970 AT2G16970 AT2G16970 AT2G16980 AT2G16980 AT2G16980 AT2G16980 AT2G16980 AT2G16980 AT2G16990 AT2G16990 AT2G16990 AT2G16990 AT2G16990 AT2G16990 AT2G16990 AT2G16990
fragaria_vesca	FvH4_2g15722 FvH4_2g15730 FvH4_2g15730 FvH4_2g15730 FvH4_2g15730 FvH4_2g15730
malus_domestica	MD05G1126300.v1.1 MD10G1129100.v1.1
prunus_persica	Prupe.8G169700_v2.0.a1 Prupe.8G169700_v2.0.a1 Prupe.8G169700_v2.0.a1
pyrus_communis	pycom05g12210 pycom10g11070
rosa_chinensis	RchiOBHm_Chr6g0279031 RchiOBHm_Chr6g0279041
rosa_laevigata	RLG00000013171
rosa_multiflora	Rmu_sc0002080.1_g000008 Rmu_sc0002080.1_g000013
rosa_roxburghii	Rroxscaffold_7G00189190
rosa_rugosa	Rorug06G0121300 Rorug06G0121400.1 Rorug06G0121500 Rorug06G0121600
rosa_samantha	Rh6AG230600 Rh6BG235400 Rh6CG237400 Rh6DG229200
rosa_wichuraiana	Rw0G017030 Rw0G021110 Rw6G020180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	769
AccB7I	CCANNNNNTGG	1 cut(s)	554
AciI	CCGC	2 cut(s)	303, 369
AclWI	GGATC	2 cut(s)	538, 567
AcsI	RAATTY	1 cut(s)	533
AcuI	CTGAAG	2 cut(s)	1063, 1071
AfaI	GTAC	3 cut(s)	448, 486, 1129
AfiI	CCNNNNNNNGG	3 cut(s)	53, 554, 779
AflII	CTTAAG	1 cut(s)	668
AgsI	TTSAA	4 cut(s)	469, 533, 1066, 1158
AjnI	CCWGG	1 cut(s)	1072
AluBI	AGCT	7 cut(s)	332, 392, 570, 602, 650, 875, 1037
AluI	AGCT	7 cut(s)	332, 392, 570, 602, 650, 875, 1037
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	2 cut(s)	538, 567
AlwNI	CAGNNNCTG	1 cut(s)	878
Ama87I	CYCGRG	1 cut(s)	413
AoxI	GGCC	1 cut(s)	425
ApeKI	GCWGC	4 cut(s)	329, 389, 872, 921
ApoI	RAATTY	1 cut(s)	533
ArsI	GACNNNNNNTTYG	2 cut(s)	198, 230
AspS9I	GGNCC	4 cut(s)	67, 183, 655, 944
AsuC2I	CCSGG	1 cut(s)	146
AsuHPI	GGTGA	2 cut(s)	49, 846
AvaI	CYCGRG	1 cut(s)	413
AvaII	GGWCC	4 cut(s)	67, 183, 655, 944
BanI	GGYRCC	1 cut(s)	769
BanII	GRGCYC	1 cut(s)	810
BbsI	GAAGAC	1 cut(s)	527
BbvCI	CCTCAGC	1 cut(s)	179
BbvI	GCAGC	4 cut(s)	341, 401, 884, 933
BccI	CCATC	3 cut(s)	436, 556, 760
BciT130I	CCWGG	1 cut(s)	1074
BciVI	GTATCC	1 cut(s)	121
BcnI	CCSGG	1 cut(s)	146
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	5 cut(s)	125, 488, 629, 902, 1174
BfrI	CTTAAG	1 cut(s)	668
BfuI	GTATCC	1 cut(s)	121
BisI	GCNGC	5 cut(s)	330, 369, 390, 873, 922
BlsI	GCNGC	5 cut(s)	331, 370, 391, 874, 923
BmcAI	AGTACT	2 cut(s)	448, 486
Bme1390I	CCNGG	2 cut(s)	146, 1074
Bme18I	GGWCC	4 cut(s)	67, 183, 655, 944
BmeT110I	CYCGRG	1 cut(s)	413
BmgT120I	GGNCC	4 cut(s)	67, 183, 655, 944
BmiI	GGNNCC	5 cut(s)	59, 185, 736, 771, 864
BmrFI	CCNGG	2 cut(s)	146, 1074
BmsI	GCATC	5 cut(s)	314, 783, 938, 962, 1045
BpiI	GAAGAC	1 cut(s)	527
BplI	GAGNNNNNCTC	2 cut(s)	70, 102
Bpu10I	CCTNAGC	1 cut(s)	179
BpuEI	CTTGAG	1 cut(s)	951
BpuMI	CCSGG	1 cut(s)	146
BsaBI	GATNNNNATC	1 cut(s)	14
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	3 cut(s)	857, 1072, 1093
BsaWI	WCCGGW	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 554, 779
Bse1I	ACTGG	1 cut(s)	482
Bse3DI	GCAATG	2 cut(s)	924, 1110
Bse8I	GATNNNNATC	1 cut(s)	14
BseBI	CCWGG	1 cut(s)	1074
BseDI	CCNNGG	3 cut(s)	857, 1072, 1093
BseGI	GGATG	1 cut(s)	977
BseJI	GATNNNNATC	1 cut(s)	14
BseLI	CCNNNNNNNGG	3 cut(s)	53, 554, 779
BseMI	GCAATG	2 cut(s)	924, 1110
BseMII	CTCAG	2 cut(s)	170, 589
BseNI	ACTGG	1 cut(s)	482
BseRI	GAGGAG	1 cut(s)	1137
BseXI	GCAGC	4 cut(s)	341, 401, 884, 933
BshFI	GGCC	1 cut(s)	427
BshNI	GGYRCC	1 cut(s)	769
BsiHKCI	CYCGRG	1 cut(s)	413
BsiSI	CCGG	2 cut(s)	47, 145
BslI	CCNNNNNNNGG	3 cut(s)	53, 554, 779
BsmAI	GTCTC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	427
Bso31I	GGTCTC	1 cut(s)	143
BsoBI	CYCGRG	1 cut(s)	413
Bsp1286I	GDGCHC	1 cut(s)	810
Bsp143I	GATC	5 cut(s)	15, 433, 543, 559, 1107
BspACI	CCGC	2 cut(s)	303, 369
BspANI	GGCC	1 cut(s)	427
BspCNI	CTCAG	2 cut(s)	171, 588
BspLI	GGNNCC	5 cut(s)	59, 185, 736, 771, 864
BspPI	GGATC	2 cut(s)	538, 567
BspT107I	GGYRCC	1 cut(s)	769
BspTI	CTTAAG	1 cut(s)	668
BspTNI	GGTCTC	1 cut(s)	143
BsrDI	GCAATG	2 cut(s)	924, 1110
BsrI	ACTGG	1 cut(s)	482
BssECI	CCNNGG	3 cut(s)	857, 1072, 1093
BssMI	GATC	5 cut(s)	15, 433, 543, 559, 1107
BssT1I	CCWWGG	2 cut(s)	857, 1093
Bst2UI	CCWGG	1 cut(s)	1074
Bst4CI	ACNGT	6 cut(s)	34, 109, 821, 842, 880, 1062
BstAFI	CTTAAG	1 cut(s)	668
BstC8I	GCNNGC	4 cut(s)	387, 458, 644, 648
BstDEI	CTNAG	3 cut(s)	179, 373, 575
BstEII	GGTNACC	1 cut(s)	852
BstF5I	GGATG	1 cut(s)	977
BstKTI	GATC	5 cut(s)	18, 436, 546, 562, 1110
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	5 cut(s)	15, 433, 543, 559, 1107
BstMWI	GCNNNNNNNGC	4 cut(s)	134, 239, 902, 981
BstNI	CCWGG	1 cut(s)	1074
BstNSI	RCATGY	2 cut(s)	204, 646
BstPI	GGTNACC	1 cut(s)	852
BstSCI	CCNGG	2 cut(s)	144, 1072
BstV1I	GCAGC	4 cut(s)	341, 401, 884, 933
BstV2I	GAAGAC	1 cut(s)	527
BstX2I	RGATCY	2 cut(s)	543, 559
BstYI	RGATCY	2 cut(s)	543, 559
BsuI	GTATCC	1 cut(s)	121
BsuRI	GGCC	1 cut(s)	427
BtsCI	GGATG	1 cut(s)	977
BtsI	GCAGTG	1 cut(s)	217
BtsIMutI	CAGTG	2 cut(s)	217, 812
Cac8I	GCNNGC	4 cut(s)	387, 458, 644, 648
CaiI	CAGNNNCTG	1 cut(s)	878
Cfr13I	GGNCC	4 cut(s)	67, 183, 655, 944
Csp6I	GTAC	3 cut(s)	447, 485, 1128
CviAII	CATG	8 cut(s)	25, 196, 201, 400, 437, 643, 757, 763
CviQI	GTAC	3 cut(s)	447, 485, 1128
DdeI	CTNAG	3 cut(s)	179, 373, 575
DpnI	GATC	5 cut(s)	17, 435, 545, 561, 1109
DpnII	GATC	5 cut(s)	15, 433, 543, 559, 1107
Eco130I	CCWWGG	2 cut(s)	857, 1093
Eco24I	GRGCYC	1 cut(s)	810
Eco31I	GGTCTC	1 cut(s)	143
Eco32I	GATATC	1 cut(s)	729
Eco47I	GGWCC	4 cut(s)	67, 183, 655, 944
Eco57I	CTGAAG	2 cut(s)	1063, 1071
Eco88I	CYCGRG	1 cut(s)	413
Eco91I	GGTNACC	1 cut(s)	852
EcoO109I	RGGNCCY	1 cut(s)	183
EcoO65I	GGTNACC	1 cut(s)	852
EcoRII	CCWGG	1 cut(s)	1072
EcoRV	GATATC	1 cut(s)	729
EcoT14I	CCWWGG	2 cut(s)	857, 1093
EcoT22I	ATGCAT	1 cut(s)	977
EcoT38I	GRGCYC	1 cut(s)	810
ErhI	CCWWGG	2 cut(s)	857, 1093
FaeI	CATG	8 cut(s)	28, 199, 204, 403, 440, 646, 760, 766
FatI	CATG	8 cut(s)	24, 195, 200, 399, 436, 642, 756, 762
Fnu4HI	GCNGC	5 cut(s)	330, 369, 390, 873, 922
FokI	GGATG	1 cut(s)	984
FriOI	GRGCYC	1 cut(s)	810
Fsp4HI	GCNGC	5 cut(s)	330, 369, 390, 873, 922
FspBI	CTAG	5 cut(s)	125, 488, 629, 902, 1174
GluI	GCNGC	5 cut(s)	330, 369, 390, 873, 922
HaeIII	GGCC	1 cut(s)	427
HapII	CCGG	2 cut(s)	47, 145
Hin1II	CATG	8 cut(s)	28, 199, 204, 403, 440, 646, 760, 766
HincII	GTYRAC	2 cut(s)	217, 354
HindII	GTYRAC	2 cut(s)	217, 354
HindIII	AAGCTT	1 cut(s)	648
HinfI	GANTC	2 cut(s)	43, 495
HpaI	GTTAAC	1 cut(s)	354
HpaII	CCGG	2 cut(s)	47, 145
HphI	GGTGA	2 cut(s)	49, 846
Hpy166II	GTNNAC	3 cut(s)	217, 354, 397
Hpy188I	TCNGA	8 cut(s)	67, 256, 433, 519, 624, 782, 1051, 1125
Hpy188III	TCNNGA	4 cut(s)	413, 466, 577, 732
Hpy8I	GTNNAC	3 cut(s)	217, 354, 397
HpyAV	CCTTC	4 cut(s)	76, 200, 463, 629
HpyCH4III	ACNGT	6 cut(s)	34, 109, 821, 842, 880, 1062
HpyCH4V	TGCA	8 cut(s)	13, 275, 646, 872, 929, 975, 1058, 1103
HpyF10VI	GCNNNNNNNGC	4 cut(s)	134, 239, 902, 981
HpyF3I	CTNAG	3 cut(s)	179, 373, 575
Hsp92II	CATG	8 cut(s)	28, 199, 204, 403, 440, 646, 760, 766
KspAI	GTTAAC	1 cut(s)	354
Kzo9I	GATC	5 cut(s)	15, 433, 543, 559, 1107
LmnI	GCTCC	2 cut(s)	734, 1015
Lsp1109I	GCAGC	4 cut(s)	341, 401, 884, 933
LweI	GCATC	5 cut(s)	314, 783, 938, 962, 1045
MaeI	CTAG	5 cut(s)	125, 488, 629, 902, 1174
MaeIII	GTNAC	3 cut(s)	594, 852, 1160
MalI	GATC	5 cut(s)	17, 435, 545, 561, 1109
MboI	GATC	5 cut(s)	15, 433, 543, 559, 1107
MboII	GAAGA	5 cut(s)	532, 553, 607, 879, 1064
MfeI	CAATTG	1 cut(s)	801
MflI	RGATCY	2 cut(s)	543, 559
MhlI	GDGCHC	1 cut(s)	810
MluCI	AATT	8 cut(s)	51, 420, 528, 533, 801, 1066, 1119, 1165
MmeI	TCCRAC	2 cut(s)	45, 922
Mph1103I	ATGCAT	1 cut(s)	977
MseI	TTAA	5 cut(s)	353, 537, 669, 1031, 1118
MslI	CAYNNNNRTG	2 cut(s)	23, 761
MspA1I	CMGCKG	1 cut(s)	392
MspCI	CTTAAG	1 cut(s)	668
MspI	CCGG	2 cut(s)	47, 145
MspR9I	CCNGG	2 cut(s)	146, 1074
MunI	CAATTG	1 cut(s)	801
MvaI	CCWGG	1 cut(s)	1074
MwoI	GCNNNNNNNGC	4 cut(s)	134, 239, 902, 981
NciI	CCSGG	1 cut(s)	146
NdeII	GATC	5 cut(s)	15, 433, 543, 559, 1107
NlaIII	CATG	8 cut(s)	28, 199, 204, 403, 440, 646, 760, 766
NlaIV	GGNNCC	5 cut(s)	59, 185, 736, 771, 864
NmuCI	GTSAC	3 cut(s)	594, 852, 1160
NsiI	ATGCAT	1 cut(s)	977
NspI	RCATGY	2 cut(s)	204, 646
PaeI	GCATGC	1 cut(s)	646
PaeR7I	CTCGAG	1 cut(s)	413
PfeI	GAWTC	2 cut(s)	43, 495
PflFI	GACNNNGTC	1 cut(s)	592
PflMI	CCANNNNNTGG	1 cut(s)	554
PkrI	GCNGC	5 cut(s)	331, 370, 391, 874, 923
PpuMI	RGGWCCY	1 cut(s)	183
Psp5II	RGGWCCY	1 cut(s)	183
Psp6I	CCWGG	1 cut(s)	1072
PspEI	GGTNACC	1 cut(s)	852
PspGI	CCWGG	1 cut(s)	1072
PspN4I	GGNNCC	5 cut(s)	59, 185, 736, 771, 864
PspPI	GGNCC	4 cut(s)	67, 183, 655, 944
PspPPI	RGGWCCY	1 cut(s)	183
PstNI	CAGNNNCTG	1 cut(s)	878
PsuI	RGATCY	2 cut(s)	543, 559
PsyI	GACNNNGTC	1 cut(s)	592
PvuII	CAGCTG	1 cut(s)	392
RsaI	GTAC	3 cut(s)	448, 486, 1129
RsaNI	GTAC	3 cut(s)	447, 485, 1128
RseI	CAYNNNNRTG	2 cut(s)	23, 761
SaqAI	TTAA	5 cut(s)	353, 537, 669, 1031, 1118
SatI	GCNGC	5 cut(s)	330, 369, 390, 873, 922
Sau3AI	GATC	5 cut(s)	15, 433, 543, 559, 1107
Sau96I	GGNCC	4 cut(s)	67, 183, 655, 944
ScaI	AGTACT	2 cut(s)	448, 486
ScrFI	CCNGG	2 cut(s)	146, 1074
SduI	GDGCHC	1 cut(s)	810
SfaNI	GCATC	5 cut(s)	314, 783, 938, 962, 1045
Sfr274I	CTCGAG	1 cut(s)	413
SinI	GGWCC	4 cut(s)	67, 183, 655, 944
SlaI	CTCGAG	1 cut(s)	413
SmiMI	CAYNNNNRTG	2 cut(s)	23, 761
SmlI	CTYRAG	3 cut(s)	413, 668, 966
SmoI	CTYRAG	3 cut(s)	413, 668, 966
SphI	GCATGC	1 cut(s)	646
Sse9I	AATT	8 cut(s)	51, 420, 528, 533, 801, 1066, 1119, 1165
SsiI	CCGC	2 cut(s)	303, 369
SspI	AATATT	1 cut(s)	132
SspMI	CTAG	5 cut(s)	125, 488, 629, 902, 1174
StyD4I	CCNGG	2 cut(s)	144, 1072
StyI	CCWWGG	2 cut(s)	857, 1093
TaaI	ACNGT	6 cut(s)	34, 109, 821, 842, 880, 1062
TaqI	TCGA	2 cut(s)	414, 687
TaqII	GACCGA	1 cut(s)	643
TasI	AATT	8 cut(s)	51, 420, 528, 533, 801, 1066, 1119, 1165
TatI	WGTACW	3 cut(s)	446, 484, 1127
TauI	GCSGC	1 cut(s)	371
TfiI	GAWTC	2 cut(s)	43, 495
Tru1I	TTAA	5 cut(s)	353, 537, 669, 1031, 1118
Tru9I	TTAA	5 cut(s)	353, 537, 669, 1031, 1118
TscAI	CASTG	2 cut(s)	217, 819
TseFI	GTSAC	3 cut(s)	594, 852, 1160
TseI	GCWGC	4 cut(s)	329, 389, 872, 921
Tsp45I	GTSAC	3 cut(s)	594, 852, 1160
TspDTI	ATGAA	2 cut(s)	56, 745
TspRI	CASTG	2 cut(s)	217, 819
Tth111I	GACNNNGTC	1 cut(s)	592
Van91I	CCANNNNNTGG	1 cut(s)	554
Vha464I	CTTAAG	1 cut(s)	668
VpaK11BI	GGWCC	4 cut(s)	67, 183, 655, 944
XapI	RAATTY	1 cut(s)	533
XceI	RCATGY	2 cut(s)	204, 646
XhoI	CTCGAG	1 cut(s)	413
XspI	CTAG	5 cut(s)	125, 488, 629, 902, 1174
ZrmI	AGTACT	2 cut(s)	448, 486
Zsp2I	ATGCAT	1 cut(s)	977

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.