Rh6BG235400

Hippocampus abundant

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001419
Physical Location & Seq
Forward (+)
44189696 .. 44201396
11701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG235400.1

Sequence Viewer

Length: 963 bp
ATGGAGGAGGATAGTCTCTGCAGATCGAGTATTGGTGGTGAAGAGATGAAAGGGATGGAGAAGAGCGAGCTGAGGCACCTTTTCGTGACGGTGTTCCTCTCTTCGCTTTCCATGTTCTTGGTGATTCCGACCATAACCGACGTCACCATAGCGGCGGTTTGCCCCGGTCGGCAAAGCTGCTCTCTTGCCATTTACCTCTCTGGGTTTCAACAAGCGATCATAGGCATGGGAACGGTGGTGATGAATCCGGTAATTGGGAACCTGTCGGACCTCTATGGGAGGAAGGCTCTGCTCACATTCCCATTGACAGTATCCATTATCCCACTAGCAATATTGGCGTATAGCCGGGAGACCAACTTTTTCTATGCTTTCTATGTGCTGAGGACACTAACTGCCATGACATGCGAAGGCAGTGTCAACTGCCTCGCCCTCGCTTATGTGGCAGACAACATTTCAGAGAGAGAGAGAGTATCTGCATTTGGACTTCTATCTGGGTTTTTCTCCGCATCATTTGTATGTGGAACTTTAGCAGCTCGTTTCCTCCCCACTTCGTTAACATTTCAGGTTGCCGCCTTAGTATCAATGCTGGCAGCTGTTTACATGAGGATTTTTCTCGAGGAAATTAGGCCATCAGATCATGGGGATAGTACTTTGAAACAGCCTATCTTGAAGGGATTAGAACCAGTACTAGAGCGAATCACAGATGACGATTACTCTCCAAAGACGAAAATTGAATTTAAGAAGATCCCATCTGTTGGGGATCTTATTAGCTTACTCAGGAGTAGTAAGACCCTGTCACAAGCTGGTATTATTATCTTCTTTCAGAGCCTAGCAGAAGGTGGCATGCAAGCTTCGGTCCTGTATTTCCTTAAGGCTCGTTTTCAGTTCGACAAAAATCAGTTTGCTGATATAATGCTGATTATGGGGATATCAGGAGCCATAACACAGGCTAGCTACACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1

Protein Analysis

320

Amino Acids

35.04

Weight (kDa)

5.81

Isoelectric Point (pI)

38.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 27 - 315 2.4e-24 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 144
AccB1I GGYRCC 1 cut(s) 75
AccB7I CCANNNNNTGG 1 cut(s) 755
AciI CCGC 4 cut(s) 152, 155, 504, 570
AclWI GGATC 2 cut(s) 739, 768
AcsI RAATTY 1 cut(s) 734
AcyI GRCGYC 1 cut(s) 141
AfaI GTAC 2 cut(s) 649, 687
AfiI CCNNNNNNNGG 2 cut(s) 254, 755
AflII CTTAAG 1 cut(s) 869
AgsI TTSAA 4 cut(s) 209, 655, 670, 734
AluBI AGCT 8 cut(s) 70, 177, 533, 593, 771, 803, 851, 954
AluI AGCT 8 cut(s) 70, 177, 533, 593, 771, 803, 851, 954
Alw26I GTCTC 2 cut(s) 20, 344
AlwI GGATC 2 cut(s) 739, 768
Ama87I CYCGRG 1 cut(s) 614
AoxI GGCC 1 cut(s) 626
ApeKI GCWGC 3 cut(s) 177, 530, 590
ApoI RAATTY 1 cut(s) 734
ArsI GACNNNNNNTTYG 2 cut(s) 399, 431
AspS9I GGNCC 2 cut(s) 268, 856
AsuC2I CCSGG 2 cut(s) 165, 347
AsuHPI GGTGA 4 cut(s) 50, 133, 136, 250
AsuNHI GCTAGC 1 cut(s) 950
AvaI CYCGRG 1 cut(s) 614
AvaII GGWCC 2 cut(s) 268, 856
BanI GGYRCC 1 cut(s) 75
BbvCI CCTCAGC 2 cut(s) 71, 380
BbvI GCAGC 3 cut(s) 164, 542, 602
BccI CCATC 3 cut(s) 49, 637, 757
BciVI GTATCC 1 cut(s) 322
BcnI CCSGG 2 cut(s) 165, 347
BcoDI GTCTC 2 cut(s) 20, 344
BfaI CTAG 4 cut(s) 326, 689, 830, 951
BfmI CTRYAG 1 cut(s) 19
BfrI CTTAAG 1 cut(s) 869
BfuI GTATCC 1 cut(s) 322
BisI GCNGC 5 cut(s) 153, 178, 531, 570, 591
BlsI GCNGC 5 cut(s) 154, 179, 532, 571, 592
BmcAI AGTACT 2 cut(s) 649, 687
Bme1390I CCNGG 2 cut(s) 165, 347
Bme18I GGWCC 2 cut(s) 268, 856
BmeT110I CYCGRG 1 cut(s) 614
BmgT120I GGNCC 2 cut(s) 268, 856
BmiI GGNNCC 3 cut(s) 77, 260, 937
BmrFI CCNGG 2 cut(s) 165, 347
BmsI GCATC 1 cut(s) 515
BmtI GCTAGC 1 cut(s) 954
BplI GAGNNNNNCTC 2 cut(s) 271, 303
Bpu10I CCTNAGC 2 cut(s) 71, 380
BpuMI CCSGG 2 cut(s) 165, 347
BsaHI GRCGYC 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 344
BsaJI CCNNGG 1 cut(s) 163
BsaWI WCCGGW 1 cut(s) 247
Bsc4I CCNNNNNNNGG 2 cut(s) 254, 755
Bse1I ACTGG 1 cut(s) 683
BseDI CCNNGG 1 cut(s) 163
BseGI GGATG 1 cut(s) 60
BseLI CCNNNNNNNGG 2 cut(s) 254, 755
BseMII CTCAG 3 cut(s) 62, 371, 790
BseNI ACTGG 1 cut(s) 683
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 3 cut(s) 164, 542, 602
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 1 cut(s) 628
BshNI GGYRCC 1 cut(s) 75
BsiEI CGRYCG 1 cut(s) 169
BsiHKCI CYCGRG 1 cut(s) 614
BsiSI CCGG 3 cut(s) 165, 248, 346
BslI CCNNNNNNNGG 2 cut(s) 254, 755
BsmAI GTCTC 2 cut(s) 20, 344
BsnI GGCC 1 cut(s) 628
Bso31I GGTCTC 1 cut(s) 344
BsoBI CYCGRG 1 cut(s) 614
Bsp143I GATC 5 cut(s) 23, 216, 634, 744, 760
BspACI CCGC 4 cut(s) 152, 155, 504, 570
BspANI GGCC 1 cut(s) 628
BspCNI CTCAG 3 cut(s) 63, 372, 789
BspLI GGNNCC 3 cut(s) 77, 260, 937
BspMAI CTGCAG 1 cut(s) 23
BspOI GCTAGC 1 cut(s) 954
BspPI GGATC 2 cut(s) 739, 768
BspQI GCTCTTC 1 cut(s) 56
BspT107I GGYRCC 1 cut(s) 75
BspTI CTTAAG 1 cut(s) 869
BspTNI GGTCTC 1 cut(s) 344
BsrI ACTGG 1 cut(s) 683
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 5 cut(s) 23, 216, 634, 744, 760
BssNI GRCGYC 1 cut(s) 141
Bst4CI ACNGT 3 cut(s) 91, 235, 310
Bst6I CTCTTC 3 cut(s) 36, 56, 106
BstACI GRCGYC 1 cut(s) 141
BstAFI CTTAAG 1 cut(s) 869
BstC8I GCNNGC 5 cut(s) 68, 588, 845, 849, 952
BstDEI CTNAG 4 cut(s) 71, 380, 574, 776
BstF5I GGATG 1 cut(s) 60
BstKTI GATC 5 cut(s) 26, 219, 637, 747, 763
BstMAI GTCTC 2 cut(s) 20, 344
BstMBI GATC 5 cut(s) 23, 216, 634, 744, 760
BstMCI CGRYCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 2 cut(s) 335, 440
BstNSI RCATGY 2 cut(s) 405, 847
BstSCI CCNGG 2 cut(s) 163, 345
BstSFI CTRYAG 1 cut(s) 19
BstV1I GCAGC 3 cut(s) 164, 542, 602
BstX2I RGATCY 2 cut(s) 744, 760
BstXI CCANNNNNNTGG 1 cut(s) 118
BstYI RGATCY 2 cut(s) 744, 760
BsuI GTATCC 1 cut(s) 322
BsuRI GGCC 1 cut(s) 628
BtsCI GGATG 1 cut(s) 60
BtsI GCAGTG 1 cut(s) 418
BtsIMutI CAGTG 1 cut(s) 418
Cac8I GCNNGC 5 cut(s) 68, 588, 845, 849, 952
Cfr13I GGNCC 2 cut(s) 268, 856
Csp6I GTAC 2 cut(s) 648, 686
CviAII CATG 7 cut(s) 112, 226, 397, 402, 601, 638, 844
CviQI GTAC 2 cut(s) 648, 686
DdeI CTNAG 4 cut(s) 71, 380, 574, 776
DpnI GATC 5 cut(s) 25, 218, 636, 746, 762
DpnII GATC 5 cut(s) 23, 216, 634, 744, 760
Eam1104I CTCTTC 3 cut(s) 36, 56, 106
EarI CTCTTC 3 cut(s) 36, 56, 106
Eco31I GGTCTC 1 cut(s) 344
Eco32I GATATC 1 cut(s) 930
Eco47I GGWCC 2 cut(s) 268, 856
Eco88I CYCGRG 1 cut(s) 614
EcoRV GATATC 1 cut(s) 930
FaeI CATG 7 cut(s) 115, 229, 400, 405, 604, 641, 847
FatI CATG 7 cut(s) 111, 225, 396, 401, 600, 637, 843
Fnu4HI GCNGC 5 cut(s) 153, 178, 531, 570, 591
FokI GGATG 1 cut(s) 67
Fsp4HI GCNGC 5 cut(s) 153, 178, 531, 570, 591
FspBI CTAG 4 cut(s) 326, 689, 830, 951
GluI GCNGC 5 cut(s) 153, 178, 531, 570, 591
HaeIII GGCC 1 cut(s) 628
HapII CCGG 3 cut(s) 165, 248, 346
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 7 cut(s) 115, 229, 400, 405, 604, 641, 847
HincII GTYRAC 2 cut(s) 418, 555
HindII GTYRAC 2 cut(s) 418, 555
HindIII AAGCTT 1 cut(s) 849
HinfI GANTC 3 cut(s) 124, 244, 696
HpaI GTTAAC 1 cut(s) 555
HpaII CCGG 3 cut(s) 165, 248, 346
HphI GGTGA 4 cut(s) 50, 133, 136, 250
Hpy166II GTNNAC 3 cut(s) 418, 555, 598
Hpy188I TCNGA 5 cut(s) 129, 268, 457, 634, 825
Hpy188III TCNNGA 5 cut(s) 85, 614, 667, 778, 933
Hpy8I GTNNAC 3 cut(s) 418, 555, 598
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 4 cut(s) 277, 401, 664, 830
HpyCH4III ACNGT 3 cut(s) 91, 235, 310
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 3 cut(s) 21, 476, 847
HpyF10VI GCNNNNNNNGC 2 cut(s) 335, 440
HpyF3I CTNAG 4 cut(s) 71, 380, 574, 776
HpySE526I ACGT 1 cut(s) 141
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 7 cut(s) 115, 229, 400, 405, 604, 641, 847
KspAI GTTAAC 1 cut(s) 555
Kzo9I GATC 5 cut(s) 23, 216, 634, 744, 760
LguI GCTCTTC 1 cut(s) 56
LmnI GCTCC 1 cut(s) 935
Lsp1109I GCAGC 3 cut(s) 164, 542, 602
LweI GCATC 1 cut(s) 515
MaeI CTAG 4 cut(s) 326, 689, 830, 951
MaeII ACGT 1 cut(s) 141
MaeIII GTNAC 3 cut(s) 85, 142, 795
MalI GATC 5 cut(s) 25, 218, 636, 746, 762
MboI GATC 5 cut(s) 23, 216, 634, 744, 760
MboII GAAGA 5 cut(s) 53, 73, 93, 754, 808
MflI RGATCY 2 cut(s) 744, 760
MluCI AATT 4 cut(s) 252, 621, 729, 734
MmeI TCCRAC 2 cut(s) 152, 246
MseI TTAA 3 cut(s) 554, 738, 870
MslI CAYNNNNRTG 2 cut(s) 224, 514
MspA1I CMGCKG 1 cut(s) 593
MspCI CTTAAG 1 cut(s) 869
MspI CCGG 3 cut(s) 165, 248, 346
MspR9I CCNGG 2 cut(s) 165, 347
MwoI GCNNNNNNNGC 2 cut(s) 335, 440
NciI CCSGG 2 cut(s) 165, 347
NdeII GATC 5 cut(s) 23, 216, 634, 744, 760
NheI GCTAGC 1 cut(s) 950
NlaIII CATG 7 cut(s) 115, 229, 400, 405, 604, 641, 847
NlaIV GGNNCC 3 cut(s) 77, 260, 937
NmuCI GTSAC 3 cut(s) 85, 142, 795
NspI RCATGY 2 cut(s) 405, 847
PaeI GCATGC 1 cut(s) 847
PaeR7I CTCGAG 1 cut(s) 614
PciSI GCTCTTC 1 cut(s) 56
PfeI GAWTC 3 cut(s) 124, 244, 696
PflFI GACNNNGTC 1 cut(s) 793
PflMI CCANNNNNTGG 1 cut(s) 755
PkrI GCNGC 5 cut(s) 154, 179, 532, 571, 592
PspN4I GGNNCC 3 cut(s) 77, 260, 937
PspPI GGNCC 2 cut(s) 268, 856
PstI CTGCAG 1 cut(s) 23
PsuI RGATCY 2 cut(s) 744, 760
PsyI GACNNNGTC 1 cut(s) 793
PvuII CAGCTG 1 cut(s) 593
RsaI GTAC 2 cut(s) 649, 687
RsaNI GTAC 2 cut(s) 648, 686
RseI CAYNNNNRTG 2 cut(s) 224, 514
SapI GCTCTTC 1 cut(s) 56
SaqAI TTAA 3 cut(s) 554, 738, 870
SatI GCNGC 5 cut(s) 153, 178, 531, 570, 591
Sau3AI GATC 5 cut(s) 23, 216, 634, 744, 760
Sau96I GGNCC 2 cut(s) 268, 856
ScaI AGTACT 2 cut(s) 649, 687
ScrFI CCNGG 2 cut(s) 165, 347
SfaNI GCATC 1 cut(s) 515
SfcI CTRYAG 1 cut(s) 19
Sfr274I CTCGAG 1 cut(s) 614
SinI GGWCC 2 cut(s) 268, 856
SlaI CTCGAG 1 cut(s) 614
SmiMI CAYNNNNRTG 2 cut(s) 224, 514
SmlI CTYRAG 2 cut(s) 614, 869
SmoI CTYRAG 2 cut(s) 614, 869
SphI GCATGC 1 cut(s) 847
Sse9I AATT 4 cut(s) 252, 621, 729, 734
SsiI CCGC 4 cut(s) 152, 155, 504, 570
SspI AATATT 1 cut(s) 333
SspMI CTAG 4 cut(s) 326, 689, 830, 951
StyD4I CCNGG 2 cut(s) 163, 345
TaaI ACNGT 3 cut(s) 91, 235, 310
TaiI ACGT 1 cut(s) 144
TaqI TCGA 3 cut(s) 26, 615, 888
TaqII GACCGA 1 cut(s) 844
TasI AATT 4 cut(s) 252, 621, 729, 734
TatI WGTACW 2 cut(s) 647, 685
TauI GCSGC 2 cut(s) 155, 572
TfiI GAWTC 3 cut(s) 124, 244, 696
Tru1I TTAA 3 cut(s) 554, 738, 870
Tru9I TTAA 3 cut(s) 554, 738, 870
TscAI CASTG 1 cut(s) 418
TseFI GTSAC 3 cut(s) 85, 142, 795
TseI GCWGC 3 cut(s) 177, 530, 590
Tsp45I GTSAC 3 cut(s) 85, 142, 795
TspDTI ATGAA 2 cut(s) 62, 257
TspRI CASTG 1 cut(s) 418
Tth111I GACNNNGTC 1 cut(s) 793
Van91I CCANNNNNTGG 1 cut(s) 755
Vha464I CTTAAG 1 cut(s) 869
VpaK11BI GGWCC 2 cut(s) 268, 856
XapI RAATTY 1 cut(s) 734
XceI RCATGY 2 cut(s) 405, 847
XhoI CTCGAG 1 cut(s) 614
XspI CTAG 4 cut(s) 326, 689, 830, 951
ZraI GACGTC 1 cut(s) 142
ZrmI AGTACT 2 cut(s) 649, 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.