Rorug06G0121600

Hippocampus abundant

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
16742076 .. 16746617
4542 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0121600.1

Sequence Viewer

Length: 1428 bp
ATGGAGGAGAAGCTGATACAGCGGCTTGAATCGGCGGTGACGCGCCTGGAGGCGCTGTCGCTGTCCGGGGGCTCTGCTGCGGCGGCGGCGAGTGGGGACGACGCGCCGCTGGATCCGTCGGTTTTGGCGTTCGAGGATCTGATTGGGCAGTACGTGGGTAGGGTTTCGGCCGCGGCGGAGAAGATTGGGGGACAGGTGTTGGATATCACCAAGATTGTGGCGGAGGCCTTTGCCGCACAGAAGGACCTGATTATCAAGGTCAAGCAACACAAGAAACCTGACAATGCAGGGTTGGCTGAATTTCTGAAGCCACTCAATGAGGTCATTACAAAGGCAAATAAATTGACAGAAGGAAGGCGATCTGATTTTTTCAATCACTTGAAGAGTGCTGCTGACAGTCTCTCAGCTTTAGCATGGATTGCCTATACAGGGAAAGAATGTGGTATGAGCATGCCTATTGCACATGTCGAAGAAAGTTGGCAGATGGCTGAATTTTACAACAACAAGATTCTTGTCGAGTATAAAACCAAAGACCCAAATCATGTAGAGTGGGCCAAAGCTATGAAGGAACTATATATGCCTGGTTTGAGAGAATATGTTAAGAGTTTCTATCCGTTGGGTCCAGTCTGGAGTCCAGCTGGCACAGCTGTTACTGTTGCTCCATCAAAACCAAAAGCTCCGGCACCAGGTGCACCTGCTCCTCCACCTCCTCCATCGGCTTCACTCTTCAGTTCTGAAACTTCTAAGGCTTCGTCATCACGCCCGAAAGAAGGGATGGCAGCTGTTTTCCAAGAGATCAATTCTGGCAAGCCTGTCACTTCAGGTCTGAGAAAGGTCACAGATGATATGAAGACAAAGAATCGTGCTGACAGAACTGGGGTTGTTGGTACCCAGGAGAAAGAAAGTCGTACTAGTGCACCTGCTGTTTCTAAAGTAGGACCTCCGAAGTTTGAGCTTCAAATGGGTCGGAAGTGGGCTGTTGAGAATCAGATTGGAAAGAAGGATTTGGTGATTAGTGAATGTGATCCAAAACAGTCAGTATATATTTTTGGATGCAAAGACTCTGTTTTGCAAATTCAAGGGAAAGTAAACAACATTACAATTGACAAATGCACTAAGATGGGAGTTGTATTTCAGGATGTTGTGGCTGCTTTTGAGATCGTCAATTGCAACCGTGTTGAGGTGCAATGTCAGGGCTCCGCCCCAACAGTTTCAATTGACAACACAGCTGGCTGCCAATTTTATTTAAGCAAGGATGCTCTGTCTGCATCTGTAACAACGGCTAAATCAAGTGAAGTGAATATAATGGTACCTGGTGCTGAACCTGATGGCGATTGGGGCGAGCACGCATTGCCAGAACAGTTTATTCATGTGTATAAGGATGGTCGCTTTGAAACAACTCCAGTCTCTCACTCAGCAGGAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

475

Amino Acids

51.08

Weight (kDa)

6.69

Isoelectric Point (pI)

42.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP_N-CM PF01213 3 - 34 2.3e-07 CAP N-terminal conserved motif
CAP_N PF21938 44 - 205 2.7e-35 CAP, N-terminal domain
CAP_C PF08603 314 - 471 1.7e-61 Adenylate cyclase associated (CAP) C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 703, 928
Acc36I ACCTGC 2 cut(s) 703, 928
Acc65I GGTACC 2 cut(s) 887, 1309
AccB1I GGYRCC 3 cut(s) 682, 887, 1309
AccII CGCG 3 cut(s) 43, 104, 173
AclWI GGATC 4 cut(s) 107, 120, 144, 1019
AcoI YGGCCR 1 cut(s) 168
AcsI RAATTY 3 cut(s) 299, 491, 1074
AcuI CTGAAG 3 cut(s) 326, 712, 804
AdeI CACNNNGTG 1 cut(s) 689
AfaI GTAC 4 cut(s) 152, 889, 910, 1311
AfiI CCNNNNNNNGG 4 cut(s) 429, 686, 770, 1180
AflIII ACRYGT 1 cut(s) 463
AgsI TTSAA 7 cut(s) 29, 373, 382, 959, 1079, 1215, 1394
AhlI ACTAGT 1 cut(s) 911
AjnI CCWGG 5 cut(s) 45, 580, 685, 891, 1312
AluBI AGCT 9 cut(s) 13, 407, 560, 638, 647, 677, 782, 955, 1229
AluI AGCT 9 cut(s) 13, 407, 560, 638, 647, 677, 782, 955, 1229
Alw21I GWGCWC 3 cut(s) 694, 919, 1347
Alw26I GTCTC 2 cut(s) 404, 1411
Alw44I GTGCAC 2 cut(s) 690, 915
AlwI GGATC 4 cut(s) 107, 120, 144, 1019
AoxI GGCC 3 cut(s) 168, 225, 552
ApaLI GTGCAC 2 cut(s) 690, 915
ApeKI GCWGC 5 cut(s) 77, 389, 779, 1148, 1233
ApoI RAATTY 3 cut(s) 299, 491, 1074
Asp718I GGTACC 2 cut(s) 887, 1309
AspLEI GCGC 3 cut(s) 45, 55, 106
AspS9I GGNCC 4 cut(s) 244, 552, 620, 938
AsuC2I CCSGG 1 cut(s) 67
AsuHPI GGTGA 3 cut(s) 49, 199, 1021
AvaII GGWCC 3 cut(s) 244, 620, 938
BaeGI GKGCMC 2 cut(s) 694, 919
BamHI GGATCC 1 cut(s) 112
BanI GGYRCC 3 cut(s) 682, 887, 1309
BanII GRGCYC 2 cut(s) 74, 1199
BbsI GAAGAC 1 cut(s) 857
Bbv12I GWGCWC 3 cut(s) 694, 919, 1347
BbvI GCAGC 5 cut(s) 64, 376, 791, 1135, 1220
BccI CCATC 7 cut(s) 478, 670, 721, 769, 1114, 1322, 1376
BceAI ACGGC 1 cut(s) 1296
BciT130I CCWGG 5 cut(s) 47, 582, 687, 893, 1314
BcnI CCSGG 1 cut(s) 67
BcoDI GTCTC 2 cut(s) 404, 1411
BcuI ACTAGT 1 cut(s) 911
BfaI CTAG 1 cut(s) 912
BfoI RGCGCY 1 cut(s) 56
BfuAI ACCTGC 2 cut(s) 703, 928
Bme1390I CCNGG 6 cut(s) 47, 67, 582, 687, 893, 1314
Bme18I GGWCC 3 cut(s) 244, 620, 938
BmgT120I GGNCC 4 cut(s) 244, 552, 620, 938
BmiI GGNNCC 6 cut(s) 114, 621, 684, 889, 1198, 1311
BmrFI CCNGG 6 cut(s) 47, 67, 582, 687, 893, 1314
BmrI ACTGGG 1 cut(s) 885
BmsI GCATC 3 cut(s) 1043, 1246, 1277
BmuI ACTGGG 1 cut(s) 885
BpiI GAAGAC 1 cut(s) 857
BpmI CTGGAG 3 cut(s) 68, 649, 1386
BpuMI CCSGG 1 cut(s) 67
BsaAI YACGTR 1 cut(s) 154
BsaJI CCNNGG 3 cut(s) 66, 171, 891
BsaXI ACNNNNNCTCC 4 cut(s) 41, 71, 643, 673
Bsc4I CCNNNNNNNGG 4 cut(s) 429, 686, 770, 1180
Bse1I ACTGG 3 cut(s) 623, 880, 1403
Bse3DI GCAATG 2 cut(s) 1193, 1349
BseBI CCWGG 5 cut(s) 47, 582, 687, 893, 1314
BseDI CCNNGG 3 cut(s) 66, 171, 891
BseGI GGATG 5 cut(s) 780, 1058, 1144, 1261, 1387
BseLI CCNNNNNNNGG 4 cut(s) 429, 686, 770, 1180
BseMI GCAATG 2 cut(s) 1193, 1349
BseMII CTCAG 3 cut(s) 417, 818, 1428
BseNI ACTGG 3 cut(s) 623, 880, 1403
BseRI GAGGAG 3 cut(s) 20, 690, 699
BseSI GKGCMC 2 cut(s) 694, 919
BseX3I CGGCCG 1 cut(s) 168
BseXI GCAGC 5 cut(s) 64, 376, 791, 1135, 1220
Bsh1236I CGCG 3 cut(s) 43, 104, 173
Bsh1285I CGRYCG 1 cut(s) 171
BshFI GGCC 3 cut(s) 170, 227, 554
BshNI GGYRCC 3 cut(s) 682, 887, 1309
BsiEI CGRYCG 1 cut(s) 171
BsiHKAI GWGCWC 3 cut(s) 694, 919, 1347
BsiSI CCGG 2 cut(s) 66, 680
BslFI GGGAC 2 cut(s) 110, 204
BslI CCNNNNNNNGG 4 cut(s) 429, 686, 770, 1180
BsmAI GTCTC 2 cut(s) 404, 1411
BsmFI GGGAC 2 cut(s) 110, 204
BsnI GGCC 3 cut(s) 170, 227, 554
Bsp1286I GDGCHC 5 cut(s) 74, 694, 919, 1199, 1347
Bsp143I GATC 6 cut(s) 112, 136, 359, 795, 1024, 1158
BspANI GGCC 3 cut(s) 170, 227, 554
BspCNI CTCAG 3 cut(s) 416, 819, 1427
BspFNI CGCG 3 cut(s) 43, 104, 173
BspLI GGNNCC 6 cut(s) 114, 621, 684, 889, 1198, 1311
BspMI ACCTGC 2 cut(s) 703, 928
BspPI GGATC 4 cut(s) 107, 120, 144, 1019
BspT107I GGYRCC 3 cut(s) 682, 887, 1309
BsrDI GCAATG 2 cut(s) 1193, 1349
BsrI ACTGG 3 cut(s) 623, 880, 1403
BssECI CCNNGG 3 cut(s) 66, 171, 891
BssMI GATC 6 cut(s) 112, 136, 359, 795, 1024, 1158
Bst2UI CCWGG 5 cut(s) 47, 582, 687, 893, 1314
Bst4CI ACNGT 6 cut(s) 398, 655, 1035, 1175, 1210, 1362
Bst6I CTCTTC 2 cut(s) 377, 731
BstAPI GCANNNNNTGC 3 cut(s) 419, 689, 1351
BstBAI YACGTR 1 cut(s) 154
BstC8I GCNNGC 6 cut(s) 452, 640, 809, 1231, 1343, 1347
BstDEI CTNAG 5 cut(s) 403, 744, 827, 1116, 1414
BstDSI CCRYGG 1 cut(s) 171
BstF5I GGATG 5 cut(s) 780, 1058, 1144, 1261, 1387
BstFNI CGCG 3 cut(s) 43, 104, 173
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 3 cut(s) 45, 55, 106
BstKTI GATC 6 cut(s) 115, 139, 362, 798, 1027, 1161
BstMAI GTCTC 2 cut(s) 404, 1411
BstMBI GATC 6 cut(s) 112, 136, 359, 795, 1024, 1158
BstMCI CGRYCG 1 cut(s) 171
BstNI CCWGG 5 cut(s) 47, 582, 687, 893, 1314
BstNSI RCATGY 2 cut(s) 454, 467
BstSCI CCNGG 6 cut(s) 45, 65, 580, 685, 891, 1312
BstSLI GKGCMC 2 cut(s) 694, 919
BstUI CGCG 3 cut(s) 43, 104, 173
BstV1I GCAGC 5 cut(s) 64, 376, 791, 1135, 1220
BstV2I GAAGAC 1 cut(s) 857
BstX2I RGATCY 2 cut(s) 112, 136
BstXI CCANNNNNNTGG 1 cut(s) 217
BstYI RGATCY 2 cut(s) 112, 136
BstZI CGGCCG 1 cut(s) 168
BsuRI GGCC 3 cut(s) 170, 227, 554
BtgI CCRYGG 1 cut(s) 171
BtsCI GGATG 5 cut(s) 780, 1058, 1144, 1261, 1387
BveI ACCTGC 2 cut(s) 703, 928
Cac8I GCNNGC 6 cut(s) 452, 640, 809, 1231, 1343, 1347
CfoI GCGC 3 cut(s) 45, 55, 106
Cfr13I GGNCC 4 cut(s) 244, 552, 620, 938
Cfr42I CCGCGG 1 cut(s) 174
CseI GACGC 2 cut(s) 49, 110
CsiI ACCWGGT 2 cut(s) 685, 1312
Csp6I GTAC 4 cut(s) 151, 888, 909, 1310
CviAII CATG 5 cut(s) 414, 451, 464, 542, 1370
CviQI GTAC 4 cut(s) 151, 888, 909, 1310
DdeI CTNAG 5 cut(s) 403, 744, 827, 1116, 1414
DpnI GATC 6 cut(s) 114, 138, 361, 797, 1026, 1160
DpnII GATC 6 cut(s) 112, 136, 359, 795, 1024, 1158
DraIII CACNNNGTG 1 cut(s) 689
EaeI YGGCCR 1 cut(s) 168
EagI CGGCCG 1 cut(s) 168
Eam1104I CTCTTC 2 cut(s) 377, 731
EarI CTCTTC 2 cut(s) 377, 731
EciI GGCGGA 3 cut(s) 191, 236, 1189
EclXI CGGCCG 1 cut(s) 168
Eco147I AGGCCT 1 cut(s) 227
Eco24I GRGCYC 2 cut(s) 74, 1199
Eco32I GATATC 1 cut(s) 205
Eco47I GGWCC 3 cut(s) 244, 620, 938
Eco52I CGGCCG 1 cut(s) 168
Eco57I CTGAAG 3 cut(s) 326, 712, 804
EcoO109I RGGNCCY 2 cut(s) 244, 938
EcoRII CCWGG 5 cut(s) 45, 580, 685, 891, 1312
EcoRV GATATC 1 cut(s) 205
EcoT38I GRGCYC 2 cut(s) 74, 1199
FaeI CATG 5 cut(s) 417, 454, 467, 545, 1373
FaqI GGGAC 2 cut(s) 110, 204
FatI CATG 5 cut(s) 413, 450, 463, 541, 1369
FokI GGATG 5 cut(s) 787, 1065, 1151, 1268, 1394
FriOI GRGCYC 2 cut(s) 74, 1199
FspBI CTAG 1 cut(s) 912
GlaI GCGC 3 cut(s) 44, 54, 105
GsuI CTGGAG 3 cut(s) 68, 649, 1386
HaeII RGCGCY 1 cut(s) 56
HaeIII GGCC 3 cut(s) 170, 227, 554
HapII CCGG 2 cut(s) 66, 680
HgaI GACGC 2 cut(s) 49, 110
HhaI GCGC 3 cut(s) 45, 55, 106
Hin1II CATG 5 cut(s) 417, 454, 467, 545, 1373
Hin6I GCGC 3 cut(s) 43, 53, 104
HinP1I GCGC 3 cut(s) 43, 53, 104
HinfI GANTC 6 cut(s) 29, 508, 631, 859, 985, 1061
HpaII CCGG 2 cut(s) 66, 680
HphI GGTGA 3 cut(s) 49, 199, 1021
Hpy166II GTNNAC 3 cut(s) 692, 917, 1090
Hpy188I TCNGA 8 cut(s) 141, 306, 364, 736, 828, 945, 969, 990
Hpy188III TCNNGA 2 cut(s) 628, 1136
Hpy8I GTNNAC 3 cut(s) 692, 917, 1090
Hpy99I CGWCG 2 cut(s) 104, 121
HpyAV CCTTC 6 cut(s) 235, 344, 348, 559, 764, 994
HpyCH4III ACNGT 6 cut(s) 398, 655, 1035, 1175, 1210, 1362
HpyCH4IV ACGT 1 cut(s) 153
HpyF3I CTNAG 5 cut(s) 403, 744, 827, 1116, 1414
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 5 cut(s) 417, 454, 467, 545, 1373
HspAI GCGC 3 cut(s) 43, 53, 104
KpnI GGTACC 2 cut(s) 891, 1313
KspI CCGCGG 1 cut(s) 174
Kzo9I GATC 6 cut(s) 112, 136, 359, 795, 1024, 1158
LmnI GCTCC 4 cut(s) 664, 682, 703, 1202
Lsp1109I GCAGC 5 cut(s) 64, 376, 791, 1135, 1220
LweI GCATC 3 cut(s) 1043, 1246, 1277
MabI ACCWGGT 2 cut(s) 685, 1312
MaeI CTAG 1 cut(s) 912
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 5 cut(s) 37, 649, 814, 835, 1273
MalI GATC 6 cut(s) 114, 138, 361, 797, 1026, 1160
MboI GATC 6 cut(s) 112, 136, 359, 795, 1024, 1158
MboII GAAGA 5 cut(s) 193, 394, 482, 718, 862
MfeI CAATTG 3 cut(s) 1101, 1165, 1215
MflI RGATCY 2 cut(s) 112, 136
MhlI GDGCHC 5 cut(s) 74, 694, 919, 1199, 1347
MluCI AATT 9 cut(s) 299, 341, 491, 799, 1074, 1101, 1165, 1215, 1238
MlyI GAGTC 2 cut(s) 640, 1055
MmeI TCCRAC 2 cut(s) 180, 947
MseI TTAA 2 cut(s) 600, 1247
MslI CAYNNNNRTG 1 cut(s) 1118
MspA1I CMGCKG 7 cut(s) 22, 109, 173, 638, 647, 782, 1229
MspI CCGG 2 cut(s) 66, 680
MspR9I CCNGG 6 cut(s) 47, 67, 582, 687, 893, 1314
MunI CAATTG 3 cut(s) 1101, 1165, 1215
MvaI CCWGG 5 cut(s) 47, 582, 687, 893, 1314
MvnI CGCG 3 cut(s) 43, 104, 173
NciI CCSGG 1 cut(s) 67
NdeII GATC 6 cut(s) 112, 136, 359, 795, 1024, 1158
NlaIII CATG 5 cut(s) 417, 454, 467, 545, 1373
NlaIV GGNNCC 6 cut(s) 114, 621, 684, 889, 1198, 1311
NmuCI GTSAC 3 cut(s) 37, 814, 835
NspI RCATGY 2 cut(s) 454, 467
PaeI GCATGC 1 cut(s) 454
PaqCI CACCTGC 2 cut(s) 703, 928
PceI AGGCCT 1 cut(s) 227
PciI ACATGT 1 cut(s) 463
PcsI WCGNNNNNNNCGW 1 cut(s) 125
PfeI GAWTC 4 cut(s) 29, 508, 859, 985
PleI GAGTC 2 cut(s) 639, 1055
PpsI GAGTC 2 cut(s) 639, 1055
Ppu21I YACGTR 1 cut(s) 154
PpuMI RGGWCCY 2 cut(s) 244, 938
PscI ACATGT 1 cut(s) 463
Psp5II RGGWCCY 2 cut(s) 244, 938
Psp6I CCWGG 5 cut(s) 45, 580, 685, 891, 1312
PspGI CCWGG 5 cut(s) 45, 580, 685, 891, 1312
PspN4I GGNNCC 6 cut(s) 114, 621, 684, 889, 1198, 1311
PspPI GGNCC 4 cut(s) 244, 552, 620, 938
PspPPI RGGWCCY 2 cut(s) 244, 938
PsuI RGATCY 2 cut(s) 112, 136
PvuII CAGCTG 4 cut(s) 638, 647, 782, 1229
RsaI GTAC 4 cut(s) 152, 889, 910, 1311
RsaNI GTAC 4 cut(s) 151, 888, 909, 1310
RseI CAYNNNNRTG 1 cut(s) 1118
SacII CCGCGG 1 cut(s) 174
SaqAI TTAA 2 cut(s) 600, 1247
Sau3AI GATC 6 cut(s) 112, 136, 359, 795, 1024, 1158
Sau96I GGNCC 4 cut(s) 244, 552, 620, 938
SchI GAGTC 2 cut(s) 640, 1055
ScrFI CCNGG 6 cut(s) 47, 67, 582, 687, 893, 1314
SduI GDGCHC 5 cut(s) 74, 694, 919, 1199, 1347
SexAI ACCWGGT 2 cut(s) 685, 1312
SfaNI GCATC 3 cut(s) 1043, 1246, 1277
Sfr303I CCGCGG 1 cut(s) 174
SgrBI CCGCGG 1 cut(s) 174
SinI GGWCC 3 cut(s) 244, 620, 938
SmiMI CAYNNNNRTG 1 cut(s) 1118
SpeI ACTAGT 1 cut(s) 911
SphI GCATGC 1 cut(s) 454
Sse9I AATT 9 cut(s) 299, 341, 491, 799, 1074, 1101, 1165, 1215, 1238
SseBI AGGCCT 1 cut(s) 227
SspMI CTAG 1 cut(s) 912
StuI AGGCCT 1 cut(s) 227
StyD4I CCNGG 6 cut(s) 45, 65, 580, 685, 891, 1312
TaaI ACNGT 6 cut(s) 398, 655, 1035, 1175, 1210, 1362
TaiI ACGT 1 cut(s) 156
TaqI TCGA 3 cut(s) 132, 468, 516
TasI AATT 9 cut(s) 299, 341, 491, 799, 1074, 1101, 1165, 1215, 1238
TauI GCSGC 8 cut(s) 25, 83, 86, 89, 109, 173, 176, 236
TfiI GAWTC 4 cut(s) 29, 508, 859, 985
Tru1I TTAA 2 cut(s) 600, 1247
Tru9I TTAA 2 cut(s) 600, 1247
TseFI GTSAC 3 cut(s) 37, 814, 835
TseI GCWGC 5 cut(s) 77, 389, 779, 1148, 1233
Tsp45I GTSAC 3 cut(s) 37, 814, 835
TspDTI ATGAA 3 cut(s) 578, 863, 1358
TspGWI ACGGA 2 cut(s) 105, 603
VneI GTGCAC 2 cut(s) 690, 915
VpaK11BI GGWCC 3 cut(s) 244, 620, 938
XapI RAATTY 3 cut(s) 299, 491, 1074
XceI RCATGY 2 cut(s) 454, 467
XspI CTAG 1 cut(s) 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.