Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001419

Physical Location & Seq

Genomic Coordinates Forward (+)

13798109 .. 13803334

Gene Structure 5226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g15730.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGATAGGCATGGGAACGGTTGTGATGAATCCGGTAATTGGGAACCTGTCGGACCTCTATGGAAGGAAAGCTCTGCTCACATTCCCATTGACACTATCCATTATCCCACTAGCAATATTGGCATATAGCCAGGAGACCAACTTCTTCTATGCTTTCTATCTGCTGAGGACCCTAACAGCCATGACATGTGAAGGCAGCGTCAACTGCCTCGCCCTCGCTTATCTGGCAGACAACATTCCAGAGAAAGAAAGAGTATCTACATTTGGAATTCTAGCTGGGTTTACCTCCGCATCATTTGTATGTGGAACTTTAGTAGCTCGTTTCCTCCCCACTTCCTTAACATTTCAGGTTGCTGCCTTAGGATCAATGATGGCGGCCGTTTACATGAGAATTTTTCTCAAAGAAAGCAGGCTATCAGATCATGGGGATAGTTCTTTGAGCCAGCCTATCTTGAAAGGATCAGAACCAGTACTAGAGCGAATCACAGATGATGACGATTACACTCCAAAAACAAAAGTTGCATTTAAGAAGATGCCATCAGCTGCTGATCTTTTTGGCTTACTTAGGAGTAGTAAGACCCTGTCACAAGCTGGGATTATTACCTTCTTTCAGAGCCTAGCAGAAGGTGGCATGCAAGCTACTGTCCTGTATTTCCTTAAGGCTCGTTTTCAATTCGACAAAAATCAGTTTGCTGATATATTGCTCCTTGTGGGGATATCAGGAGCCATATCACAGATGGTTTTCATGCCGCTGTTGGCACCTAGAATTCGAGAGGAAAGCATGCTGTCATTTGGGCTCTTACTGAGCTGTATCAGTATGTTTCTAAATAGTGTCGCTTGGGCACCTTGGGTTCCTTATGCAGCGACTGTGTTTTCTTCTTTTGGCTTATTAGCACAACCAACGATTCGCAGCATTGCATCAAAACAAGTTGGACCAACTGAGCAGGGAAAGGCTCAAGGATGCATGGCAGGCATAAGTTCTTTTGCCAACATTGTTTCTCCATTAGTTTTTAGCCCTTTGACAGCTTTATTTTTGTCTGAAGATGCACCGTTCAATTTCCCCGGCTTCAGTATTATGTGCCTTGGACTTGCAACGGTCATTGCATTAATTCTGAGTACTATGATAAGGGCTTCTCCTCCTATTTCAAGTCACAGTGTAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

388

Amino Acids

41.73

Weight (kDa)

8.16

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	4 - 334	1.6e-28	Major Facilitator Superfamily
Sugar_tr	PF00083	12 - 112	8.9e-06	Sugar (and other) transporter
MFS_1	PF07690	199 - 379	5.6e-08	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16970 AT2G16970 AT2G16970 AT2G16970 AT2G16970 AT2G16970 AT2G16970 AT2G16970 AT2G16980 AT2G16980 AT2G16980 AT2G16980 AT2G16980 AT2G16980 AT2G16990 AT2G16990 AT2G16990 AT2G16990 AT2G16990 AT2G16990 AT2G16990 AT2G16990
fragaria_vesca	FvH4_2g15722 FvH4_2g15730 FvH4_2g15730 FvH4_2g15730 FvH4_2g15730 FvH4_2g15730
malus_domestica	MD05G1126300.v1.1 MD10G1129100.v1.1
prunus_persica	Prupe.8G169700_v2.0.a1 Prupe.8G169700_v2.0.a1 Prupe.8G169700_v2.0.a1
pyrus_communis	pycom05g12210 pycom10g11070
rosa_chinensis	RchiOBHm_Chr6g0279031 RchiOBHm_Chr6g0279041
rosa_laevigata	RLG00000013171
rosa_multiflora	Rmu_sc0002080.1_g000008 Rmu_sc0002080.1_g000013
rosa_roxburghii	Rroxscaffold_7G00189190
rosa_rugosa	Rorug06G0121300 Rorug06G0121400.1 Rorug06G0121500 Rorug06G0121600
rosa_samantha	Rh6AG230600 Rh6BG235400 Rh6CG237400 Rh6DG229200
rosa_wichuraiana	Rw0G017030 Rw0G021110 Rw6G020180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	757, 841
AciI	CCGC	3 cut(s)	288, 374, 749
AclWI	GGATC	2 cut(s)	370, 466
AcoI	YGGCCR	1 cut(s)	375
AcsI	RAATTY	3 cut(s)	267, 390, 765
AcuI	CTGAAG	2 cut(s)	1051, 1059
AfaI	GTAC	2 cut(s)	471, 1117
AfiI	CCNNNNNNNGG	1 cut(s)	38
AflII	CTTAAG	1 cut(s)	656
AflIII	ACRYGT	1 cut(s)	185
AgsI	TTSAA	4 cut(s)	454, 671, 1054, 1146
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	8 cut(s)	71, 275, 317, 542, 590, 638, 807, 1025
AluI	AGCT	8 cut(s)	71, 275, 317, 542, 590, 638, 807, 1025
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	2 cut(s)	370, 466
AlwNI	CAGNNNCTG	2 cut(s)	545, 866
AoxI	GGCC	1 cut(s)	375
ApeKI	GCWGC	5 cut(s)	195, 353, 542, 860, 909
ApoI	RAATTY	3 cut(s)	267, 390, 765
AseI	ATTAAT	1 cut(s)	1106
AspS9I	GGNCC	3 cut(s)	52, 168, 932
AsuC2I	CCSGG	1 cut(s)	1062
AvaII	GGWCC	3 cut(s)	52, 168, 932
AxyI	CCTNAGG	1 cut(s)	358
BaeGI	GKGCMC	1 cut(s)	844
BanI	GGYRCC	2 cut(s)	757, 841
BanII	GRGCYC	1 cut(s)	798
BbvCI	CCTCAGC	1 cut(s)	164
BbvI	GCAGC	5 cut(s)	207, 340, 529, 872, 921
BccI	CCATC	3 cut(s)	364, 544, 730
BceAI	ACGGC	1 cut(s)	362
BciT130I	CCWGG	1 cut(s)	131
BcnI	CCSGG	1 cut(s)	1062
BcoDI	GTCTC	1 cut(s)	128
BfaI	CTAG	6 cut(s)	110, 272, 473, 617, 762, 1162
BfrI	CTTAAG	1 cut(s)	656
BisI	GCNGC	7 cut(s)	196, 354, 375, 543, 749, 861, 910
BlsI	GCNGC	7 cut(s)	197, 355, 376, 544, 750, 862, 911
BmcAI	AGTACT	2 cut(s)	471, 1117
Bme1390I	CCNGG	2 cut(s)	131, 1062
Bme18I	GGWCC	3 cut(s)	52, 168, 932
BmgT120I	GGNCC	3 cut(s)	52, 168, 932
BmiI	GGNNCC	6 cut(s)	44, 170, 724, 759, 843, 852
BmrFI	CCNGG	2 cut(s)	131, 1062
BmsI	GCATC	5 cut(s)	299, 522, 926, 950, 1033
Bpu10I	CCTNAGC	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	939
BpuMI	CCSGG	1 cut(s)	1062
BsaI	GGTCTC	1 cut(s)	128
BsaJI	CCNNGG	3 cut(s)	845, 1060, 1081
BsaWI	WCCGGW	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse1I	ACTGG	1 cut(s)	467
Bse21I	CCTNAGG	1 cut(s)	358
Bse3DI	GCAATG	2 cut(s)	912, 1098
BseBI	CCWGG	1 cut(s)	131
BseDI	CCNNGG	3 cut(s)	845, 1060, 1081
BseGI	GGATG	1 cut(s)	965
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseMI	GCAATG	2 cut(s)	912, 1098
BseMII	CTCAG	4 cut(s)	155, 794, 930, 1103
BseNI	ACTGG	1 cut(s)	467
BseRI	GAGGAG	1 cut(s)	1125
BseSI	GKGCMC	1 cut(s)	844
BseX3I	CGGCCG	1 cut(s)	375
BseXI	GCAGC	5 cut(s)	207, 340, 529, 872, 921
BseYI	CCCAGC	2 cut(s)	275, 590
Bsh1285I	CGRYCG	1 cut(s)	378
BshFI	GGCC	1 cut(s)	377
BshNI	GGYRCC	2 cut(s)	757, 841
BsiEI	CGRYCG	1 cut(s)	378
BsiSI	CCGG	2 cut(s)	32, 1062
BslI	CCNNNNNNNGG	1 cut(s)	38
BsmAI	GTCTC	1 cut(s)	128
BsnI	GGCC	1 cut(s)	377
Bso31I	GGTCTC	1 cut(s)	128
Bsp1286I	GDGCHC	2 cut(s)	798, 844
Bsp143I	GATC	4 cut(s)	362, 418, 458, 547
BspACI	CCGC	3 cut(s)	288, 374, 749
BspANI	GGCC	1 cut(s)	377
BspCNI	CTCAG	4 cut(s)	156, 795, 931, 1104
BspLI	GGNNCC	6 cut(s)	44, 170, 724, 759, 843, 852
BspPI	GGATC	2 cut(s)	370, 466
BspT107I	GGYRCC	2 cut(s)	757, 841
BspTI	CTTAAG	1 cut(s)	656
BspTNI	GGTCTC	1 cut(s)	128
BsrDI	GCAATG	2 cut(s)	912, 1098
BsrI	ACTGG	1 cut(s)	467
BssECI	CCNNGG	3 cut(s)	845, 1060, 1081
BssMI	GATC	4 cut(s)	362, 418, 458, 547
BssT1I	CCWWGG	2 cut(s)	845, 1081
Bst2UI	CCWGG	1 cut(s)	131
Bst4CI	ACNGT	6 cut(s)	19, 643, 868, 1050, 1096, 1154
BstAFI	CTTAAG	1 cut(s)	656
BstC8I	GCNNGC	6 cut(s)	410, 443, 632, 636, 782, 970
BstDEI	CTNAG	6 cut(s)	164, 358, 563, 803, 939, 1112
BstF5I	GGATG	1 cut(s)	965
BstKTI	GATC	4 cut(s)	365, 421, 461, 550
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	4 cut(s)	362, 418, 458, 547
BstMCI	CGRYCG	1 cut(s)	378
BstMWI	GCNNNNNNNGC	4 cut(s)	119, 204, 224, 969
BstNI	CCWGG	1 cut(s)	131
BstNSI	RCATGY	3 cut(s)	189, 634, 784
BstSCI	CCNGG	2 cut(s)	129, 1060
BstSLI	GKGCMC	1 cut(s)	844
BstV1I	GCAGC	5 cut(s)	207, 340, 529, 872, 921
BstZI	CGGCCG	1 cut(s)	375
Bsu36I	CCTNAGG	1 cut(s)	358
BsuRI	GGCC	1 cut(s)	377
BtsCI	GGATG	1 cut(s)	965
BtsIMutI	CAGTG	1 cut(s)	1159
Cac8I	GCNNGC	6 cut(s)	410, 443, 632, 636, 782, 970
CaiI	CAGNNNCTG	2 cut(s)	545, 866
Cfr13I	GGNCC	3 cut(s)	52, 168, 932
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	2 cut(s)	470, 1116
CviAII	CATG	9 cut(s)	10, 181, 186, 385, 422, 631, 745, 781, 964
CviQI	GTAC	2 cut(s)	470, 1116
DdeI	CTNAG	6 cut(s)	164, 358, 563, 803, 939, 1112
DpnI	GATC	4 cut(s)	364, 420, 460, 549
DpnII	GATC	4 cut(s)	362, 418, 458, 547
EaeI	YGGCCR	1 cut(s)	375
EagI	CGGCCG	1 cut(s)	375
EclXI	CGGCCG	1 cut(s)	375
Eco130I	CCWWGG	2 cut(s)	845, 1081
Eco24I	GRGCYC	1 cut(s)	798
Eco31I	GGTCTC	1 cut(s)	128
Eco32I	GATATC	1 cut(s)	717
Eco47I	GGWCC	3 cut(s)	52, 168, 932
Eco52I	CGGCCG	1 cut(s)	375
Eco57I	CTGAAG	2 cut(s)	1051, 1059
Eco81I	CCTNAGG	1 cut(s)	358
EcoO109I	RGGNCCY	1 cut(s)	168
EcoRI	GAATTC	2 cut(s)	267, 765
EcoRII	CCWGG	1 cut(s)	129
EcoRV	GATATC	1 cut(s)	717
EcoT14I	CCWWGG	2 cut(s)	845, 1081
EcoT22I	ATGCAT	1 cut(s)	965
EcoT38I	GRGCYC	1 cut(s)	798
ErhI	CCWWGG	2 cut(s)	845, 1081
FaeI	CATG	9 cut(s)	13, 184, 189, 388, 425, 634, 748, 784, 967
FatI	CATG	9 cut(s)	9, 180, 185, 384, 421, 630, 744, 780, 963
Fnu4HI	GCNGC	7 cut(s)	196, 354, 375, 543, 749, 861, 910
FokI	GGATG	1 cut(s)	972
FriOI	GRGCYC	1 cut(s)	798
Fsp4HI	GCNGC	7 cut(s)	196, 354, 375, 543, 749, 861, 910
FspBI	CTAG	6 cut(s)	110, 272, 473, 617, 762, 1162
GluI	GCNGC	7 cut(s)	196, 354, 375, 543, 749, 861, 910
GsaI	CCCAGC	2 cut(s)	279, 594
HaeIII	GGCC	1 cut(s)	377
HapII	CCGG	2 cut(s)	32, 1062
HgaI	GACGC	1 cut(s)	187
Hin1II	CATG	9 cut(s)	13, 184, 189, 388, 425, 634, 748, 784, 967
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	3 cut(s)	28, 480, 904
HpaII	CCGG	2 cut(s)	32, 1062
Hpy166II	GTNNAC	3 cut(s)	202, 282, 382
Hpy188I	TCNGA	6 cut(s)	52, 418, 463, 612, 1039, 1113
Hpy188III	TCNNGA	4 cut(s)	239, 451, 720, 770
Hpy8I	GTNNAC	3 cut(s)	202, 282, 382
HpyAV	CCTTC	4 cut(s)	57, 185, 613, 617
HpyCH4III	ACNGT	6 cut(s)	19, 643, 868, 1050, 1096, 1154
HpyCH4V	TGCA	8 cut(s)	521, 634, 860, 917, 963, 1046, 1091, 1103
HpyF10VI	GCNNNNNNNGC	4 cut(s)	119, 204, 224, 969
HpyF3I	CTNAG	6 cut(s)	164, 358, 563, 803, 939, 1112
Hsp92II	CATG	9 cut(s)	13, 184, 189, 388, 425, 634, 748, 784, 967
Kzo9I	GATC	4 cut(s)	362, 418, 458, 547
LmnI	GCTCC	2 cut(s)	708, 722
Lsp1109I	GCAGC	5 cut(s)	207, 340, 529, 872, 921
LweI	GCATC	5 cut(s)	299, 522, 926, 950, 1033
MaeI	CTAG	6 cut(s)	110, 272, 473, 617, 762, 1162
MaeIII	GTNAC	2 cut(s)	582, 1148
MalI	GATC	4 cut(s)	364, 420, 460, 549
MboI	GATC	4 cut(s)	362, 418, 458, 547
MboII	GAAGA	4 cut(s)	136, 541, 867, 1052
MhlI	GDGCHC	2 cut(s)	798, 844
MluCI	AATT	7 cut(s)	36, 267, 390, 671, 765, 1054, 1107
MmeI	TCCRAC	2 cut(s)	30, 910
MnlI	CCTC	8 cut(s)	65, 159, 218, 224, 295, 335, 766, 1146
Mph1103I	ATGCAT	1 cut(s)	965
MseI	TTAA	4 cut(s)	338, 525, 657, 1106
MslI	CAYNNNNRTG	1 cut(s)	298
MspA1I	CMGCKG	2 cut(s)	542, 751
MspCI	CTTAAG	1 cut(s)	656
MspI	CCGG	2 cut(s)	32, 1062
MspR9I	CCNGG	2 cut(s)	131, 1062
MvaI	CCWGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	4 cut(s)	119, 204, 224, 969
NciI	CCSGG	1 cut(s)	1062
NdeII	GATC	4 cut(s)	362, 418, 458, 547
NlaIII	CATG	9 cut(s)	13, 184, 189, 388, 425, 634, 748, 784, 967
NlaIV	GGNNCC	6 cut(s)	44, 170, 724, 759, 843, 852
NmuCI	GTSAC	2 cut(s)	582, 1148
NsiI	ATGCAT	1 cut(s)	965
NspI	RCATGY	3 cut(s)	189, 634, 784
PaeI	GCATGC	2 cut(s)	634, 784
PciI	ACATGT	1 cut(s)	185
PfeI	GAWTC	3 cut(s)	28, 480, 904
PflFI	GACNNNGTC	1 cut(s)	580
PkrI	GCNGC	7 cut(s)	197, 355, 376, 544, 750, 862, 911
PpuMI	RGGWCCY	1 cut(s)	168
PscI	ACATGT	1 cut(s)	185
PshBI	ATTAAT	1 cut(s)	1106
Psp5II	RGGWCCY	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	129
PspFI	CCCAGC	2 cut(s)	275, 590
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	6 cut(s)	44, 170, 724, 759, 843, 852
PspPI	GGNCC	3 cut(s)	52, 168, 932
PspPPI	RGGWCCY	1 cut(s)	168
PstNI	CAGNNNCTG	2 cut(s)	545, 866
PsyI	GACNNNGTC	1 cut(s)	580
PvuII	CAGCTG	1 cut(s)	542
RsaI	GTAC	2 cut(s)	471, 1117
RsaNI	GTAC	2 cut(s)	470, 1116
RseI	CAYNNNNRTG	1 cut(s)	298
SaqAI	TTAA	4 cut(s)	338, 525, 657, 1106
SatI	GCNGC	7 cut(s)	196, 354, 375, 543, 749, 861, 910
Sau3AI	GATC	4 cut(s)	362, 418, 458, 547
Sau96I	GGNCC	3 cut(s)	52, 168, 932
ScaI	AGTACT	2 cut(s)	471, 1117
ScrFI	CCNGG	2 cut(s)	131, 1062
SduI	GDGCHC	2 cut(s)	798, 844
SfaNI	GCATC	5 cut(s)	299, 522, 926, 950, 1033
SinI	GGWCC	3 cut(s)	52, 168, 932
SmiMI	CAYNNNNRTG	1 cut(s)	298
SmlI	CTYRAG	2 cut(s)	656, 954
SmoI	CTYRAG	2 cut(s)	656, 954
SphI	GCATGC	2 cut(s)	634, 784
Sse9I	AATT	7 cut(s)	36, 267, 390, 671, 765, 1054, 1107
SsiI	CCGC	3 cut(s)	288, 374, 749
SspI	AATATT	1 cut(s)	117
SspMI	CTAG	6 cut(s)	110, 272, 473, 617, 762, 1162
StyD4I	CCNGG	2 cut(s)	129, 1060
StyI	CCWWGG	2 cut(s)	845, 1081
TaaI	ACNGT	6 cut(s)	19, 643, 868, 1050, 1096, 1154
TaqI	TCGA	2 cut(s)	675, 769
TasI	AATT	7 cut(s)	36, 267, 390, 671, 765, 1054, 1107
TatI	WGTACW	2 cut(s)	469, 1115
TauI	GCSGC	2 cut(s)	377, 751
TfiI	GAWTC	3 cut(s)	28, 480, 904
Tru1I	TTAA	4 cut(s)	338, 525, 657, 1106
Tru9I	TTAA	4 cut(s)	338, 525, 657, 1106
TscAI	CASTG	1 cut(s)	1159
TseFI	GTSAC	2 cut(s)	582, 1148
TseI	GCWGC	5 cut(s)	195, 353, 542, 860, 909
Tsp45I	GTSAC	2 cut(s)	582, 1148
TspDTI	ATGAA	2 cut(s)	41, 733
TspRI	CASTG	1 cut(s)	1159
Tth111I	GACNNNGTC	1 cut(s)	580
Vha464I	CTTAAG	1 cut(s)	656
VpaK11BI	GGWCC	3 cut(s)	52, 168, 932
VspI	ATTAAT	1 cut(s)	1106
XapI	RAATTY	3 cut(s)	267, 390, 765
XceI	RCATGY	3 cut(s)	189, 634, 784
XcmI	CCANNNNNNNNNTGG	1 cut(s)	733
XspI	CTAG	6 cut(s)	110, 272, 473, 617, 762, 1162
ZrmI	AGTACT	2 cut(s)	471, 1117
Zsp2I	ATGCAT	1 cut(s)	965

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.