Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002374

Physical Location & Seq

Genomic Coordinates Forward (+)

7643925 .. 7646274

Gene Structure 2350 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G17570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGCTGAACTTCCTGGTCAAATAAGACATATAGGCGGTCGAATGAGTCAACTGCTAGAGCAGATATATGGGTTTTCGAGAAGATCTTTGTTTCGGGTCATATCTATGGGTCCTATACCTTGTCATATTGCCTTTATCATGGATGGAAATCGGAGATATGCAAAGAAGTGTGGTCTTTTAGATGGGTCTGGTCACAAAGCGGGGTTTTCTGCGCTTATGTCGATGCTGCAATACTGCTACGAGCTGGGTATCAAGTATGTAACGATATACGCATTTAGCATAGATAATTTTAGAAGAAAACCTGAGGAGGTTGAGTCTGTAATGGATTTGATGCTGGAAAAGATAAAGTCTTTGCTTGAAAAAGAGAGTATTGTGCATCAGTATGGGATTCGGGTCTATTTTATCGGTAACTTAGCGCTTCTAAATGACCAAGTGAGAGCTGCTGCAGAAAAAGTCATGAAAGCCACAGCTAAGAATAGTCGGGTAGTGCTTCTCATTTGCATTGCCTATAACTCGACAGATGAGATCGTACAAGCTGTCAAGAAATCTTGTATTAACAAGTCAGACAATATTGAAGCATCTAATTATAAACACGAGGATAGCGATAGTGATATAGAAGGAACAGATATGGAGAACCAAGAGAAGAAGATACAGTTGGTGGATATTGAGGAGAATATGCAGATGAGCGTGGCGCCGAATCCTGATATACTCATCAGGAGTTCAGGAGAGACGAGGCTGAGCAATTTTCTCTTATGGCAAACAGGTAATACCCAGCTCTGCTCTCCGGCTGCTCTGTGGCCTGAGATTGGTTTGAGGCATCTGCTCTGGGCTATATTGAACTTCCAAAGAAATCATTCATACTTGGAAAAGAGGAAGAAACAATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002094 GO:0003674 GO:0003824 GO:0004659 GO:0006066 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016093 GO:0016094 GO:0016740 GO:0016765 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046165 GO:0071704 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00900 ko01110 map00900 map01110

Pfam Domains

Protein Families

Prenyltransf

Protein Analysis

295

Amino Acids

33.63

Weight (kDa)

8.42

Isoelectric Point (pI)

51.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltransf	PF01255	46 - 285	5.1e-67	Putative undecaprenyl diphosphate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17570
fragaria_vesca	FvH4_1g10471 FvH4_1g10471 FvH4_1g10480 FvH4_2g21620 FvH4_7g34231
malus_domestica	MD02G1118000.v1.1 MD02G1118200.v1.1 MD05G1029700.v1.1 MD15G1232700.v1.1
prunus_persica	Prupe.1G067500_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.8G224900_v2.0.a1 Prupe.8G224900_v2.0.a1
pyrus_communis	pycom02g09160 pycom05g02100
rosa_chinensis	RchiOBHm_Chr2g0097351 RchiOBHm_Chr6g0288291
rosa_laevigata	RLG00000012417 RLG00000016719 RLG00000017370
rosa_multiflora	Rmu_sc0001038.1_g000003
rosa_roxburghii	Rroxscaffold_2G00144750 Rroxscaffold_7G00180240
rosa_rugosa	Rorug02G0065900 Rorug06G0195300
rosa_samantha	Rh2AG112700 Rh2AG174400 Rh2BG115400 Rh2BG182100 Rh2CG117500 Rh2DG116700 Rh2DG180900 Rh6AG306500 Rh6BG312100 Rh6CG320100 Rh6DG305400
rosa_wichuraiana	Rw2G008820 Rw6G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	588
AccB1I	GGYRCC	1 cut(s)	691
AciI	CCGC	2 cut(s)	36, 200
AcyI	GRCGYC	1 cut(s)	692
AfaI	GTAC	1 cut(s)	531
AfeI	AGCGCT	1 cut(s)	417
AfiI	CCNNNNNNNGG	1 cut(s)	806
AgsI	TTSAA	3 cut(s)	359, 575, 838
AjnI	CCWGG	1 cut(s)	13
AjuI	GAANNNNNNNTTGG	2 cut(s)	638, 670
AluBI	AGCT	5 cut(s)	244, 440, 470, 536, 775
AluI	AGCT	5 cut(s)	244, 440, 470, 536, 775
Alw26I	GTCTC	1 cut(s)	722
Aor51HI	AGCGCT	1 cut(s)	417
AoxI	GGCC	1 cut(s)	797
ApeKI	GCWGC	4 cut(s)	226, 440, 443, 788
Asp700I	GAANNNNTTC	1 cut(s)	853
AspLEI	GCGC	3 cut(s)	214, 418, 694
AspS9I	GGNCC	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	110
AxyI	CCTNAGG	1 cut(s)	303
BanI	GGYRCC	1 cut(s)	691
BauI	CACGAG	1 cut(s)	593
BbvI	GCAGC	4 cut(s)	213, 427, 430, 775
BccI	CCATC	2 cut(s)	137, 176
BciT130I	CCWGG	1 cut(s)	15
BcoDI	GTCTC	1 cut(s)	722
BfaI	CTAG	1 cut(s)	56
BfmI	CTRYAG	1 cut(s)	444
BfoI	RGCGCY	2 cut(s)	419, 695
BglII	AGATCT	1 cut(s)	83
BisI	GCNGC	4 cut(s)	227, 441, 444, 789
BlpI	GCTNAGC	1 cut(s)	737
BlsI	GCNGC	4 cut(s)	228, 442, 445, 790
Bme1390I	CCNGG	1 cut(s)	15
Bme18I	GGWCC	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	110
BmiI	GGNNCC	2 cut(s)	111, 693
BmrFI	CCNGG	1 cut(s)	15
BmsI	GCATC	5 cut(s)	213, 321, 385, 587, 826
Bpu1102I	GCTNAGC	1 cut(s)	737
BsaBI	GATNNNNATC	1 cut(s)	147
BsaHI	GRCGYC	1 cut(s)	692
BsaXI	ACNNNNNCTCC	2 cut(s)	299, 329
Bsc4I	CCNNNNNNNGG	1 cut(s)	806
Bse21I	CCTNAGG	1 cut(s)	303
Bse3DI	GCAATG	1 cut(s)	501
Bse8I	GATNNNNATC	1 cut(s)	147
BseBI	CCWGG	1 cut(s)	15
BseGI	GGATG	1 cut(s)	148
BseJI	GATNNNNATC	1 cut(s)	147
BseLI	CCNNNNNNNGG	1 cut(s)	806
BseMI	GCAATG	1 cut(s)	501
BseMII	CTCAG	3 cut(s)	294, 728, 792
BseRI	GAGGAG	2 cut(s)	320, 683
BseXI	GCAGC	4 cut(s)	213, 427, 430, 775
BseYI	CCCAGC	2 cut(s)	244, 771
Bsh1285I	CGRYCG	1 cut(s)	40
BshFI	GGCC	1 cut(s)	799
BshNI	GGYRCC	1 cut(s)	691
BsiEI	CGRYCG	1 cut(s)	40
BsiSI	CCGG	1 cut(s)	785
BslI	CCNNNNNNNGG	1 cut(s)	806
BsmAI	GTCTC	1 cut(s)	722
BsmBI	CGTCTC	1 cut(s)	722
BsnI	GGCC	1 cut(s)	799
Bsp143I	GATC	2 cut(s)	83, 525
Bsp1720I	GCTNAGC	1 cut(s)	737
BspACI	CCGC	2 cut(s)	36, 200
BspANI	GGCC	1 cut(s)	799
BspCNI	CTCAG	3 cut(s)	295, 729, 793
BspHI	TCATGA	1 cut(s)	456
BspLI	GGNNCC	2 cut(s)	111, 693
BspMAI	CTGCAG	1 cut(s)	448
BspT107I	GGYRCC	1 cut(s)	691
BsrDI	GCAATG	1 cut(s)	501
BssMI	GATC	2 cut(s)	83, 525
BssNI	GRCGYC	1 cut(s)	692
BssSI	CACGAG	1 cut(s)	593
Bst2BI	CACGAG	1 cut(s)	593
Bst2UI	CCWGG	1 cut(s)	15
Bst4CI	ACNGT	1 cut(s)	654
BstACI	GRCGYC	1 cut(s)	692
BstDEI	CTNAG	5 cut(s)	303, 412, 471, 737, 801
BstF5I	GGATG	1 cut(s)	148
BstH2I	RGCGCY	2 cut(s)	419, 695
BstHHI	GCGC	3 cut(s)	214, 418, 694
BstKTI	GATC	2 cut(s)	86, 528
BstMAI	GTCTC	1 cut(s)	722
BstMBI	GATC	2 cut(s)	83, 525
BstMCI	CGRYCG	1 cut(s)	40
BstNI	CCWGG	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	13
BstSFI	CTRYAG	1 cut(s)	444
BstV1I	GCAGC	4 cut(s)	213, 427, 430, 775
BstX2I	RGATCY	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	83
Bsu36I	CCTNAGG	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	799
BtsCI	GGATG	1 cut(s)	148
CciI	TCATGA	1 cut(s)	456
CfoI	GCGC	3 cut(s)	214, 418, 694
Cfr13I	GGNCC	1 cut(s)	110
Csp6I	GTAC	1 cut(s)	530
CviAII	CATG	2 cut(s)	139, 457
CviQI	GTAC	1 cut(s)	530
DdeI	CTNAG	5 cut(s)	303, 412, 471, 737, 801
DinI	GGCGCC	1 cut(s)	693
DpnI	GATC	2 cut(s)	85, 527
DpnII	GATC	2 cut(s)	83, 525
Eco47I	GGWCC	1 cut(s)	110
Eco47III	AGCGCT	1 cut(s)	417
Eco81I	CCTNAGG	1 cut(s)	303
EcoO109I	RGGNCCY	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	13
EgeI	GGCGCC	1 cut(s)	693
EheI	GGCGCC	1 cut(s)	693
Esp3I	CGTCTC	1 cut(s)	722
FaeI	CATG	2 cut(s)	142, 460
FatI	CATG	2 cut(s)	138, 456
FauI	CCCGC	1 cut(s)	193
Fnu4HI	GCNGC	4 cut(s)	227, 441, 444, 789
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	4 cut(s)	227, 441, 444, 789
FspBI	CTAG	1 cut(s)	56
GlaI	GCGC	3 cut(s)	213, 417, 693
GluI	GCNGC	4 cut(s)	227, 441, 444, 789
GsaI	CCCAGC	2 cut(s)	248, 775
HaeII	RGCGCY	2 cut(s)	419, 695
HaeIII	GGCC	1 cut(s)	799
HapII	CCGG	1 cut(s)	785
HhaI	GCGC	3 cut(s)	214, 418, 694
Hin1I	GRCGYC	1 cut(s)	692
Hin1II	CATG	2 cut(s)	142, 460
Hin6I	GCGC	3 cut(s)	212, 416, 692
HinP1I	GCGC	3 cut(s)	212, 416, 692
HincII	GTYRAC	1 cut(s)	50
HindII	GTYRAC	1 cut(s)	50
HinfI	GANTC	4 cut(s)	46, 314, 388, 697
HpaII	CCGG	1 cut(s)	785
Hpy166II	GTNNAC	1 cut(s)	50
Hpy188I	TCNGA	2 cut(s)	153, 565
Hpy188III	TCNNGA	6 cut(s)	78, 457, 541, 701, 715, 723
Hpy8I	GTNNAC	1 cut(s)	50
HpyAV	CCTTC	1 cut(s)	611
HpyCH4III	ACNGT	1 cut(s)	654
HpyCH4V	TGCA	6 cut(s)	161, 229, 376, 446, 501, 679
HpyF3I	CTNAG	5 cut(s)	303, 412, 471, 737, 801
Hsp92I	GRCGYC	1 cut(s)	692
Hsp92II	CATG	2 cut(s)	142, 460
HspAI	GCGC	3 cut(s)	212, 416, 692
KasI	GGCGCC	1 cut(s)	691
Kzo9I	GATC	2 cut(s)	83, 525
Lsp1109I	GCAGC	4 cut(s)	213, 427, 430, 775
LweI	GCATC	5 cut(s)	213, 321, 385, 587, 826
MaeI	CTAG	1 cut(s)	56
MaeIII	GTNAC	3 cut(s)	191, 259, 407
MalI	GATC	2 cut(s)	85, 527
MboI	GATC	2 cut(s)	83, 525
MboII	GAAGA	5 cut(s)	93, 306, 655, 658, 886
MflI	RGATCY	1 cut(s)	83
MluCI	AATT	4 cut(s)	286, 583, 742, 881
Mly113I	GGCGCC	1 cut(s)	692
MlyI	GAGTC	2 cut(s)	55, 323
MnlI	CCTC	7 cut(s)	298, 301, 589, 661, 726, 807, 864
MroXI	GAANNNNTTC	1 cut(s)	853
MseI	TTAA	1 cut(s)	555
MslI	CAYNNNNRTG	2 cut(s)	104, 381
MspI	CCGG	1 cut(s)	785
MspR9I	CCNGG	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	15
NarI	GGCGCC	1 cut(s)	692
NdeII	GATC	2 cut(s)	83, 525
NlaIII	CATG	2 cut(s)	142, 460
NlaIV	GGNNCC	2 cut(s)	111, 693
NmuCI	GTSAC	1 cut(s)	191
PagI	TCATGA	1 cut(s)	456
PcsI	WCGNNNNNNNCGW	1 cut(s)	600
PdmI	GAANNNNTTC	1 cut(s)	853
PfeI	GAWTC	2 cut(s)	388, 697
PkrI	GCNGC	4 cut(s)	228, 442, 445, 790
PleI	GAGTC	2 cut(s)	54, 322
PluTI	GGCGCC	1 cut(s)	695
PpsI	GAGTC	2 cut(s)	54, 322
PpuMI	RGGWCCY	1 cut(s)	110
PsiI	TTATAA	1 cut(s)	588
Psp5II	RGGWCCY	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	13
PspFI	CCCAGC	2 cut(s)	244, 771
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	2 cut(s)	111, 693
PspPI	GGNCC	1 cut(s)	110
PspPPI	RGGWCCY	1 cut(s)	110
PstI	CTGCAG	1 cut(s)	448
PsuI	RGATCY	1 cut(s)	83
RsaI	GTAC	1 cut(s)	531
RsaNI	GTAC	1 cut(s)	530
RseI	CAYNNNNRTG	2 cut(s)	104, 381
SaqAI	TTAA	1 cut(s)	555
SatI	GCNGC	4 cut(s)	227, 441, 444, 789
Sau3AI	GATC	2 cut(s)	83, 525
Sau96I	GGNCC	1 cut(s)	110
SchI	GAGTC	2 cut(s)	55, 323
ScrFI	CCNGG	1 cut(s)	15
SetI	ASST	9 cut(s)	121, 246, 304, 312, 442, 472, 538, 766, 777
SfaNI	GCATC	5 cut(s)	213, 321, 385, 587, 826
SfcI	CTRYAG	1 cut(s)	444
SfoI	GGCGCC	1 cut(s)	693
SinI	GGWCC	1 cut(s)	110
SmiMI	CAYNNNNRTG	2 cut(s)	104, 381
Sse9I	AATT	4 cut(s)	286, 583, 742, 881
SsiI	CCGC	2 cut(s)	36, 200
SspDI	GGCGCC	1 cut(s)	691
SspI	AATATT	1 cut(s)	571
SspMI	CTAG	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	13
TaaI	ACNGT	1 cut(s)	654
TaqI	TCGA	4 cut(s)	40, 77, 221, 515
TasI	AATT	4 cut(s)	286, 583, 742, 881
TfiI	GAWTC	2 cut(s)	388, 697
Tru1I	TTAA	1 cut(s)	555
Tru9I	TTAA	1 cut(s)	555
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	4 cut(s)	226, 440, 443, 788
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	2 cut(s)	473, 846
VpaK11BI	GGWCC	1 cut(s)	110
XmnI	GAANNNNTTC	1 cut(s)	853
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.