Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002374

Physical Location & Seq

Genomic Coordinates Reverse (-)

20251841 .. 20255013

Gene Structure 3173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G224900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGAGAAAAGCAATGGCAATAAAGCAACCCAGATTTTTTGGAGCATAGTTAGTTTCTTGAGGAGATGTCTTTTTCTAGTCATTTCTGTTCGTCCAATACCTCATCACATTGCGTTCATCATGGATGGAAATCGAAGATATGCTAAAAAGCGGAAGTTGAAGGAAGGGGATGGACATAGGGTTGGGTTTTTGGCTCTGATGTCCATGCTCAAGTATTGTTATGAGTTGGGAGTTAGATATGTGACTATATATGCCTTTAGTATTGATAATTTCAAAAGGGACCCTGAAGAAGTTAAATCCTTGATGGACCTGATGCGGGAGAAAATTGAAGGGTTAATCAAGGAAGAAAGCATAGTGAACCGGTATGGAATTAAGGTACACTTTATAGGGAACCTAAAACTCTTGAGTGAACCTGTTAGGTTGGCAGCTGAGAGGGCTATGGAGGCCACTGCCAACAACTCCAGAGGAGTTCTGTCAATATGTATTGCCTACACTTCCACTGATGAGATTGTGCATGCTGTTCAAGAATCGTGCGAAGAAAAATCAGATGAAATTAGTGTAATGAATGCAAGTGGAGCTGGGTATGGTCTACTTCAACTTGGAGGGAATGAAAAGGAAGAAAGGGAGAACATTGTAAAATTGACAGATATTGAAAAGCATATGTACATGGCTGTTGCACCTGACCCTGATATTCTAATCCGTACTTCTGGCGAGACCCGGTTGAGCAATTTTCTTTTGTGGCAGAGTGCACACTGTTATTTGTACTCTCCATCTGTGCTCTGGCCAGAGATTGGTTTCCGGCATTTCACTTGGGCGATCTTGAGCTTTCAGCGTAGCTACTTTTATCTGGACAGAAAAAGGAAACAGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00900 ko01110 map00900 map01110

Pfam Domains

Protein Families

Prenyltransf

Protein Analysis

291

Amino Acids

33.42

Weight (kDa)

8.83

Isoelectric Point (pI)

45.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17570
fragaria_vesca	FvH4_1g10471 FvH4_1g10471 FvH4_1g10480 FvH4_2g21620 FvH4_7g34231
malus_domestica	MD02G1118000.v1.1 MD02G1118200.v1.1 MD05G1029700.v1.1 MD15G1232700.v1.1
prunus_persica	Prupe.1G067500_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.8G224900_v2.0.a1 Prupe.8G224900_v2.0.a1
pyrus_communis	pycom02g09160 pycom05g02100
rosa_chinensis	RchiOBHm_Chr2g0097351 RchiOBHm_Chr6g0288291
rosa_laevigata	RLG00000012417 RLG00000016719 RLG00000017370
rosa_multiflora	Rmu_sc0001038.1_g000003
rosa_roxburghii	Rroxscaffold_2G00144750 Rroxscaffold_7G00180240
rosa_rugosa	Rorug02G0065900 Rorug06G0195300
rosa_samantha	Rh2AG112700 Rh2AG174400 Rh2BG115400 Rh2BG182100 Rh2CG117500 Rh2DG116700 Rh2DG180900 Rh6AG306500 Rh6BG312100 Rh6CG320100 Rh6DG305400
rosa_wichuraiana	Rw2G008820 Rw6G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	791
AccI	GTMKAC	1 cut(s)	589
AciI	CCGC	2 cut(s)	151, 316
AcoI	YGGCCR	1 cut(s)	782
AcuI	CTGAAG	1 cut(s)	306
AfaI	GTAC	4 cut(s)	378, 665, 703, 764
AfiI	CCNNNNNNNGG	2 cut(s)	316, 791
AgeI	ACCGGT	1 cut(s)	360
AgsI	TTSAA	6 cut(s)	160, 274, 329, 524, 596, 653
AluBI	AGCT	4 cut(s)	428, 578, 825, 837
AluI	AGCT	4 cut(s)	428, 578, 825, 837
Alw21I	GWGCWC	2 cut(s)	751, 780
Alw26I	GTCTC	1 cut(s)	707
Alw44I	GTGCAC	1 cut(s)	747
AoxI	GGCC	2 cut(s)	444, 782
ApaLI	GTGCAC	1 cut(s)	747
ApeKI	GCWGC	1 cut(s)	425
AsiGI	ACCGGT	1 cut(s)	360
AspS9I	GGNCC	2 cut(s)	280, 307
AsuC2I	CCSGG	1 cut(s)	718
AvaII	GGWCC	2 cut(s)	280, 307
BaeGI	GKGCMC	1 cut(s)	751
BalI	TGGCCA	1 cut(s)	784
Bbv12I	GWGCWC	2 cut(s)	751, 780
BbvI	GCAGC	1 cut(s)	437
BccI	CCATC	4 cut(s)	119, 164, 298, 778
BcnI	CCSGG	1 cut(s)	718
BcoDI	GTCTC	1 cut(s)	707
BfaI	CTAG	1 cut(s)	77
BisI	GCNGC	1 cut(s)	426
BlsI	GCNGC	1 cut(s)	427
Bme1390I	CCNGG	1 cut(s)	718
Bme18I	GGWCC	2 cut(s)	280, 307
BmgT120I	GGNCC	2 cut(s)	280, 307
BmiI	GGNNCC	3 cut(s)	281, 282, 392
BmrFI	CCNGG	1 cut(s)	718
BmsI	GCATC	1 cut(s)	303
BpmI	CTGGAG	1 cut(s)	445
BpuEI	CTTGAG	4 cut(s)	79, 194, 424, 841
BpuMI	CCSGG	1 cut(s)	718
BsaBI	GATNNNNATC	1 cut(s)	129
BsaI	GGTCTC	1 cut(s)	707
BsaWI	WCCGGW	1 cut(s)	360
Bsc4I	CCNNNNNNNGG	2 cut(s)	316, 791
Bse118I	RCCGGY	1 cut(s)	360
Bse3DI	GCAATG	2 cut(s)	19, 108
Bse8I	GATNNNNATC	1 cut(s)	129
BseGI	GGATG	2 cut(s)	130, 175
BseJI	GATNNNNATC	1 cut(s)	129
BseLI	CCNNNNNNNGG	2 cut(s)	316, 791
BseMI	GCAATG	2 cut(s)	19, 108
BseMII	CTCAG	1 cut(s)	420
BseRI	GAGGAG	2 cut(s)	76, 480
BseSI	GKGCMC	1 cut(s)	751
BseXI	GCAGC	1 cut(s)	437
BseYI	CCCAGC	1 cut(s)	578
BshFI	GGCC	2 cut(s)	446, 784
BshTI	ACCGGT	1 cut(s)	360
BsiHKAI	GWGCWC	2 cut(s)	751, 780
BsiSI	CCGG	3 cut(s)	361, 718, 799
BslFI	GGGAC	1 cut(s)	293
BslI	CCNNNNNNNGG	2 cut(s)	316, 791
BsmAI	GTCTC	1 cut(s)	707
BsmFI	GGGAC	1 cut(s)	293
BsmI	GAATGC	1 cut(s)	571
BsnI	GGCC	2 cut(s)	446, 784
Bso31I	GGTCTC	1 cut(s)	707
Bsp1286I	GDGCHC	2 cut(s)	751, 780
Bsp1407I	TGTACA	1 cut(s)	663
Bsp143I	GATC	1 cut(s)	816
BspACI	CCGC	2 cut(s)	151, 316
BspANI	GGCC	2 cut(s)	446, 784
BspCNI	CTCAG	1 cut(s)	421
BspLI	GGNNCC	3 cut(s)	281, 282, 392
BspTNI	GGTCTC	1 cut(s)	707
BsrDI	GCAATG	2 cut(s)	19, 108
BsrFI	RCCGGY	1 cut(s)	360
BsrGI	TGTACA	1 cut(s)	663
BssAI	RCCGGY	1 cut(s)	360
BssMI	GATC	1 cut(s)	816
Bst4CI	ACNGT	2 cut(s)	755, 867
BstAUI	TGTACA	1 cut(s)	663
BstC8I	GCNNGC	1 cut(s)	516
BstDEI	CTNAG	1 cut(s)	429
BstF5I	GGATG	2 cut(s)	130, 175
BstKTI	GATC	1 cut(s)	819
BstMAI	GTCTC	1 cut(s)	707
BstMBI	GATC	1 cut(s)	816
BstMWI	GCNNNNNNNGC	3 cut(s)	434, 443, 575
BstNSI	RCATGY	1 cut(s)	518
BstSCI	CCNGG	1 cut(s)	716
BstSLI	GKGCMC	1 cut(s)	751
BstV1I	GCAGC	1 cut(s)	437
BsuRI	GGCC	2 cut(s)	446, 784
BtsCI	GGATG	2 cut(s)	130, 175
BtsI	GCAGTG	1 cut(s)	447
BtsIMutI	CAGTG	3 cut(s)	447, 498, 751
Cac8I	GCNNGC	1 cut(s)	516
Cfr10I	RCCGGY	1 cut(s)	360
Cfr13I	GGNCC	2 cut(s)	280, 307
Csp6I	GTAC	4 cut(s)	377, 664, 702, 763
CspAI	ACCGGT	1 cut(s)	360
CviAII	CATG	4 cut(s)	121, 205, 515, 667
CviJI	RGCY	9 cut(s)	194, 428, 437, 446, 578, 671, 784, 825, 837
CviKI_1	RGCY	9 cut(s)	194, 428, 437, 446, 578, 671, 784, 825, 837
CviQI	GTAC	4 cut(s)	377, 664, 702, 763
DdeI	CTNAG	1 cut(s)	429
DpnI	GATC	1 cut(s)	818
DpnII	GATC	1 cut(s)	816
EaeI	YGGCCR	1 cut(s)	782
Eco31I	GGTCTC	1 cut(s)	707
Eco47I	GGWCC	2 cut(s)	280, 307
Eco57I	CTGAAG	1 cut(s)	306
EcoO109I	RGGNCCY	1 cut(s)	280
FaeI	CATG	4 cut(s)	124, 208, 518, 670
FalI	AAGNNNNNCTT	2 cut(s)	365, 397
FaqI	GGGAC	1 cut(s)	293
FatI	CATG	4 cut(s)	120, 204, 514, 666
FauI	CCCGC	1 cut(s)	309
FauNDI	CATATG	1 cut(s)	660
FblI	GTMKAC	1 cut(s)	589
Fnu4HI	GCNGC	1 cut(s)	426
FokI	GGATG	2 cut(s)	137, 182
Fsp4HI	GCNGC	1 cut(s)	426
FspBI	CTAG	1 cut(s)	77
GluI	GCNGC	1 cut(s)	426
GsaI	CCCAGC	1 cut(s)	582
GsuI	CTGGAG	1 cut(s)	445
HaeIII	GGCC	2 cut(s)	446, 784
HapII	CCGG	3 cut(s)	361, 718, 799
Hin1II	CATG	4 cut(s)	124, 208, 518, 670
HinfI	GANTC	1 cut(s)	527
HpaII	CCGG	3 cut(s)	361, 718, 799
Hpy166II	GTNNAC	5 cut(s)	358, 379, 410, 590, 749
Hpy188I	TCNGA	2 cut(s)	198, 547
Hpy188III	TCNNGA	6 cut(s)	58, 403, 462, 524, 820, 848
Hpy8I	GTNNAC	5 cut(s)	358, 379, 410, 590, 749
HpyAV	CCTTC	3 cut(s)	154, 158, 323
HpyCH4III	ACNGT	2 cut(s)	755, 867
HpyCH4V	TGCA	4 cut(s)	514, 569, 677, 749
HpyF10VI	GCNNNNNNNGC	3 cut(s)	434, 443, 575
HpyF3I	CTNAG	1 cut(s)	429
Hsp92II	CATG	4 cut(s)	124, 208, 518, 670
KflI	GGGWCCC	1 cut(s)	280
Kzo9I	GATC	1 cut(s)	816
LmnI	GCTCC	2 cut(s)	42, 575
Lsp1109I	GCAGC	1 cut(s)	437
LweI	GCATC	1 cut(s)	303
MaeI	CTAG	1 cut(s)	77
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	1 cut(s)	818
MboI	GATC	1 cut(s)	816
MboII	GAAGA	5 cut(s)	147, 299, 356, 548, 629
MhlI	GDGCHC	2 cut(s)	751, 780
MlsI	TGGCCA	1 cut(s)	784
MluCI	AATT	6 cut(s)	268, 324, 369, 552, 638, 727
MluNI	TGGCCA	1 cut(s)	784
MnlI	CCTC	6 cut(s)	54, 111, 426, 436, 458, 596
Mox20I	TGGCCA	1 cut(s)	784
MscI	TGGCCA	1 cut(s)	784
MseI	TTAA	3 cut(s)	294, 335, 372
Msp20I	TGGCCA	1 cut(s)	784
MspA1I	CMGCKG	1 cut(s)	428
MspI	CCGG	3 cut(s)	361, 718, 799
MspR9I	CCNGG	1 cut(s)	718
Mva1269I	GAATGC	1 cut(s)	571
MwoI	GCNNNNNNNGC	3 cut(s)	434, 443, 575
NciI	CCSGG	1 cut(s)	718
NdeI	CATATG	1 cut(s)	660
NdeII	GATC	1 cut(s)	816
NlaIII	CATG	4 cut(s)	124, 208, 518, 670
NlaIV	GGNNCC	3 cut(s)	281, 282, 392
NmuCI	GTSAC	1 cut(s)	241
NspI	RCATGY	1 cut(s)	518
PaeI	GCATGC	1 cut(s)	518
PctI	GAATGC	1 cut(s)	571
PfeI	GAWTC	1 cut(s)	527
PflMI	CCANNNNNTGG	1 cut(s)	791
PinAI	ACCGGT	1 cut(s)	360
PkrI	GCNGC	1 cut(s)	427
PpuMI	RGGWCCY	1 cut(s)	280
Psp5II	RGGWCCY	1 cut(s)	280
PspFI	CCCAGC	1 cut(s)	578
PspN4I	GGNNCC	3 cut(s)	281, 282, 392
PspPI	GGNCC	2 cut(s)	280, 307
PspPPI	RGGWCCY	1 cut(s)	280
PvuII	CAGCTG	1 cut(s)	428
RsaI	GTAC	4 cut(s)	378, 665, 703, 764
RsaNI	GTAC	4 cut(s)	377, 664, 702, 763
SaqAI	TTAA	3 cut(s)	294, 335, 372
SatI	GCNGC	1 cut(s)	426
Sau3AI	GATC	1 cut(s)	816
Sau96I	GGNCC	2 cut(s)	280, 307
ScrFI	CCNGG	1 cut(s)	718
SduI	GDGCHC	2 cut(s)	751, 780
SfaNI	GCATC	1 cut(s)	303
SinI	GGWCC	2 cut(s)	280, 307
SmlI	CTYRAG	4 cut(s)	58, 209, 403, 820
SmoI	CTYRAG	4 cut(s)	58, 209, 403, 820
SphI	GCATGC	1 cut(s)	518
Sse9I	AATT	6 cut(s)	268, 324, 369, 552, 638, 727
SsiI	CCGC	2 cut(s)	151, 316
SspMI	CTAG	1 cut(s)	77
StyD4I	CCNGG	1 cut(s)	716
TaaI	ACNGT	2 cut(s)	755, 867
TaqI	TCGA	1 cut(s)	133
TasI	AATT	6 cut(s)	268, 324, 369, 552, 638, 727
TatI	WGTACW	2 cut(s)	663, 762
TfiI	GAWTC	1 cut(s)	527
Tru1I	TTAA	3 cut(s)	294, 335, 372
Tru9I	TTAA	3 cut(s)	294, 335, 372
TscAI	CASTG	3 cut(s)	454, 505, 758
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	1 cut(s)	425
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	4 cut(s)	106, 564, 578, 624
TspGWI	ACGGA	1 cut(s)	689
TspRI	CASTG	3 cut(s)	454, 505, 758
Van91I	CCANNNNNTGG	1 cut(s)	791
VneI	GTGCAC	1 cut(s)	747
VpaK11BI	GGWCC	2 cut(s)	280, 307
XceI	RCATGY	1 cut(s)	518
XcmI	CCANNNNNNNNNTGG	1 cut(s)	777
XmiI	GTMKAC	1 cut(s)	589
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.