Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002374

Physical Location & Seq

Genomic Coordinates Reverse (-)

82655727 .. 82657901

Gene Structure 2175 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00144750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGACGAACAAAGTCTTGTTGCTGCAAACCAAAGCCATGGGGGTTTCACTTCTTTTCTGAGGAAATGCTTGTTTAGTGTAATGTCTGTTGGCCCCATTCCTGCTCACATCGCGTTCATCATGGATGGGAACCGAAGGTATGCAAAGAGACGGAACTTACCAGTTGGGGAAGGCCACAAAGCTGGATACTGGTCTCTCATGTCCCTTCTTAGGTACTGCTGGGAAATGGGAGTGAAGTATGTAACTGTCTATGCCTTCAGCATTGACAATTTCAAGAGACCGCCGGACGAGGTGCAAATTCTAATGGACCTTTTGCAGGAGAAGATTGAAGGCTTGCTTGACAAAAGGAGTTATCTGAACCAAGCTGGTGTTAGAGTATGCTTCATTGGTAACTTGAAGCTTCTGAACGAGCCTGTCAGAGTTGCTGCTGAAAATGCAATGAAGGCGACTGCCAATAACTCCAGTGCTACGCTTTTGATCTGTGTGGCCTATACTTCGACTGATGAGATTGTCCACTCTGTGGAAGAATCCTGCAAGGAGAAAATGAATGAAATTCAAGTACCTAATGGAATAAAGGTTAGCAATGGTGTGATTCGTGGAGTCGAAGAGGGAGGGAAGGTTAATGGTGTGACTGAGACTGATGTTCACAAATCCTGCAACAACAATTTTGATGGAGAATTAGGTACTGGTGCAGTTTCCAATGGTATGATCGAAAGAGTTGAAAAGGTGAAAAAGGAAAATGGTACAGTTAATCATGTAGTTGCAAGCAATGGTCTTGTTGAAGAAGTTGAAGAGAGTGGGAAGCAGCAGCAGAAAATACCTCAAGTAAAGCTGGTTGATGTTGAGAAGCACATGTACATGGCAGTCGCACCTGATCCTGACATTCTGATCCGAACTTCTGGCGAGACCCGGCTGAGCAACTTCCTTCTTTGGCAAAGTAGTAACTGCCCATTGTACTCCCCGGCTGCGCTGTGGCCAGACCTGGGTTTATGGCAATTGGTTTGGGCAGTTCTGAACTTCCAGCGCAACCACTACTATTTGGAGAAGAAAAAGAAGCAGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002094 GO:0003674 GO:0003824 GO:0004659 GO:0006066 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016093 GO:0016094 GO:0016740 GO:0016765 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046165 GO:0071704 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00900 ko01110 map00900 map01110

Pfam Domains

Protein Families

Prenyltransf

Protein Analysis

354

Amino Acids

39.55

Weight (kDa)

7.08

Isoelectric Point (pI)

46.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltransf	PF01255	40 - 183	8.1e-44	Putative undecaprenyl diphosphate synthase
Prenyltransf	PF01255	257 - 344	3.4e-22	Putative undecaprenyl diphosphate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17570
fragaria_vesca	FvH4_1g10471 FvH4_1g10471 FvH4_1g10480 FvH4_2g21620 FvH4_7g34231
malus_domestica	MD02G1118000.v1.1 MD02G1118200.v1.1 MD05G1029700.v1.1 MD15G1232700.v1.1
prunus_persica	Prupe.1G067500_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.8G224900_v2.0.a1 Prupe.8G224900_v2.0.a1
pyrus_communis	pycom02g09160 pycom05g02100
rosa_chinensis	RchiOBHm_Chr2g0097351 RchiOBHm_Chr6g0288291
rosa_laevigata	RLG00000012417 RLG00000016719 RLG00000017370
rosa_multiflora	Rmu_sc0001038.1_g000003
rosa_roxburghii	Rroxscaffold_2G00144750 Rroxscaffold_7G00180240
rosa_rugosa	Rorug02G0065900 Rorug06G0195300
rosa_samantha	Rh2AG112700 Rh2AG174400 Rh2BG115400 Rh2BG182100 Rh2CG117500 Rh2DG116700 Rh2DG180900 Rh6AG306500 Rh6BG312100 Rh6CG320100 Rh6DG305400
rosa_wichuraiana	Rw2G008820 Rw6G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1048
AccB7I	CCANNNNNTGG	1 cut(s)	520
AccII	CGCG	1 cut(s)	113
AciI	CCGC	1 cut(s)	281
AclWI	GGATC	2 cut(s)	869, 883
AcoI	YGGCCR	1 cut(s)	974
AcsI	RAATTY	2 cut(s)	297, 552
AcuI	CTGAAG	1 cut(s)	241
AdeI	CACNNNGTG	1 cut(s)	520
AfaI	GTAC	6 cut(s)	215, 561, 685, 745, 857, 956
AfiI	CCNNNNNNNGG	4 cut(s)	210, 316, 520, 983
AflIII	ACRYGT	1 cut(s)	852
AgsI	TTSAA	7 cut(s)	274, 329, 397, 557, 722, 782, 791
AjnI	CCWGG	1 cut(s)	981
AluBI	AGCT	4 cut(s)	182, 365, 400, 832
AluI	AGCT	4 cut(s)	182, 365, 400, 832
Alw26I	GTCTC	5 cut(s)	142, 198, 271, 629, 899
AlwI	GGATC	2 cut(s)	869, 883
AoxI	GGCC	4 cut(s)	91, 172, 486, 974
ApeKI	GCWGC	5 cut(s)	23, 425, 805, 808, 965
ApoI	RAATTY	2 cut(s)	297, 552
AspLEI	GCGC	2 cut(s)	970, 1026
AspS9I	GGNCC	2 cut(s)	92, 307
AsuC2I	CCSGG	2 cut(s)	910, 962
AsuHPI	GGTGA	1 cut(s)	739
AvaII	GGWCC	1 cut(s)	307
BalI	TGGCCA	1 cut(s)	976
BarI	GAAGNNNNNNTAC	2 cut(s)	839, 871
BbvI	GCAGC	5 cut(s)	10, 412, 817, 820, 952
BccI	CCATC	2 cut(s)	119, 665
BciT130I	CCWGG	1 cut(s)	983
BciVI	GTATCC	1 cut(s)	179
BcnI	CCSGG	2 cut(s)	910, 962
BcoDI	GTCTC	5 cut(s)	142, 198, 271, 629, 899
BfuAI	ACCTGC	1 cut(s)	1048
BfuI	GTATCC	1 cut(s)	179
BisI	GCNGC	5 cut(s)	24, 426, 806, 809, 966
BlpI	GCTNAGC	1 cut(s)	914
BlsI	GCNGC	5 cut(s)	25, 427, 807, 810, 967
Bme1390I	CCNGG	3 cut(s)	910, 962, 983
Bme18I	GGWCC	1 cut(s)	307
BmgT120I	GGNCC	2 cut(s)	92, 307
BmiI	GGNNCC	2 cut(s)	94, 131
BmrFI	CCNGG	3 cut(s)	910, 962, 983
BpmI	CTGGAG	1 cut(s)	445
Bpu1102I	GCTNAGC	1 cut(s)	914
BpuEI	CTTGAG	1 cut(s)	807
BpuMI	CCSGG	2 cut(s)	910, 962
BsaI	GGTCTC	3 cut(s)	198, 271, 899
BsaJI	CCNNGG	3 cut(s)	37, 960, 982
BsaXI	ACNNNNNCTCC	2 cut(s)	603, 633
Bsc4I	CCNNNNNNNGG	4 cut(s)	210, 316, 520, 983
Bse1I	ACTGG	4 cut(s)	161, 194, 462, 691
Bse3DI	GCAATG	3 cut(s)	444, 589, 775
BseBI	CCWGG	1 cut(s)	983
BseDI	CCNNGG	3 cut(s)	37, 960, 982
BseGI	GGATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	4 cut(s)	210, 316, 520, 983
BseMI	GCAATG	3 cut(s)	444, 589, 775
BseMII	CTCAG	3 cut(s)	50, 624, 905
BseNI	ACTGG	4 cut(s)	161, 194, 462, 691
BseXI	GCAGC	5 cut(s)	10, 412, 817, 820, 952
BseYI	CCCAGC	1 cut(s)	219
BsgI	GTGCAG	1 cut(s)	711
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	4 cut(s)	93, 174, 488, 976
BsiSI	CCGG	3 cut(s)	284, 910, 962
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	4 cut(s)	210, 316, 520, 983
BsmAI	GTCTC	5 cut(s)	142, 198, 271, 629, 899
BsmBI	CGTCTC	1 cut(s)	142
BsmFI	GGGAC	1 cut(s)	187
BsnI	GGCC	4 cut(s)	93, 174, 488, 976
Bso31I	GGTCTC	3 cut(s)	198, 271, 899
Bsp1407I	TGTACA	1 cut(s)	855
Bsp143I	GATC	4 cut(s)	477, 708, 874, 888
Bsp1720I	GCTNAGC	1 cut(s)	914
Bsp19I	CCATGG	1 cut(s)	37
BspACI	CCGC	1 cut(s)	281
BspANI	GGCC	4 cut(s)	93, 174, 488, 976
BspCNI	CTCAG	3 cut(s)	51, 625, 906
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	2 cut(s)	94, 131
BspMI	ACCTGC	1 cut(s)	1048
BspPI	GGATC	2 cut(s)	869, 883
BspTNI	GGTCTC	3 cut(s)	198, 271, 899
BsrDI	GCAATG	3 cut(s)	444, 589, 775
BsrGI	TGTACA	1 cut(s)	855
BsrI	ACTGG	4 cut(s)	161, 194, 462, 691
BssECI	CCNNGG	3 cut(s)	37, 960, 982
BssMI	GATC	4 cut(s)	477, 708, 874, 888
BssT1I	CCWWGG	1 cut(s)	37
Bst2UI	CCWGG	1 cut(s)	983
Bst4CI	ACNGT	2 cut(s)	247, 748
Bst6I	CTCTTC	2 cut(s)	600, 786
BstAUI	TGTACA	1 cut(s)	855
BstC8I	GCNNGC	2 cut(s)	335, 766
BstDEI	CTNAG	4 cut(s)	59, 209, 633, 914
BstDSI	CCRYGG	1 cut(s)	37
BstENI	CCTNNNNNAGG	1 cut(s)	314
BstF5I	GGATG	1 cut(s)	130
BstFNI	CGCG	1 cut(s)	113
BstHHI	GCGC	2 cut(s)	970, 1026
BstKTI	GATC	4 cut(s)	480, 711, 877, 891
BstMAI	GTCTC	5 cut(s)	142, 198, 271, 629, 899
BstMBI	GATC	4 cut(s)	477, 708, 874, 888
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 434, 443
BstNI	CCWGG	1 cut(s)	983
BstNSI	RCATGY	1 cut(s)	856
BstSCI	CCNGG	3 cut(s)	908, 960, 981
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	5 cut(s)	10, 412, 817, 820, 952
BstXI	CCANNNNNNTGG	2 cut(s)	38, 182
BsuI	GTATCC	1 cut(s)	179
BsuRI	GGCC	4 cut(s)	93, 174, 488, 976
BtgI	CCRYGG	1 cut(s)	37
BtgZI	GCGATG	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	130
BtsIMutI	CAGTG	1 cut(s)	469
BveI	ACCTGC	1 cut(s)	1048
Cac8I	GCNNGC	2 cut(s)	335, 766
CfoI	GCGC	2 cut(s)	970, 1026
Cfr13I	GGNCC	2 cut(s)	92, 307
Csp6I	GTAC	6 cut(s)	214, 560, 684, 744, 856, 955
CviAII	CATG	6 cut(s)	38, 121, 199, 755, 853, 859
CviQI	GTAC	6 cut(s)	214, 560, 684, 744, 856, 955
DdeI	CTNAG	4 cut(s)	59, 209, 633, 914
DpnI	GATC	4 cut(s)	479, 710, 876, 890
DpnII	GATC	4 cut(s)	477, 708, 874, 888
DraIII	CACNNNGTG	1 cut(s)	520
EaeI	YGGCCR	1 cut(s)	974
Eam1104I	CTCTTC	2 cut(s)	600, 786
EarI	CTCTTC	2 cut(s)	600, 786
Eco130I	CCWWGG	1 cut(s)	37
Eco31I	GGTCTC	3 cut(s)	198, 271, 899
Eco47I	GGWCC	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	241
EcoNI	CCTNNNNNAGG	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	981
EcoT14I	CCWWGG	1 cut(s)	37
ErhI	CCWWGG	1 cut(s)	37
Esp3I	CGTCTC	1 cut(s)	142
FaeI	CATG	6 cut(s)	41, 124, 202, 758, 856, 862
FalI	AAGNNNNNCTT	2 cut(s)	321, 353
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	6 cut(s)	37, 120, 198, 754, 852, 858
Fnu4HI	GCNGC	5 cut(s)	24, 426, 806, 809, 966
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	5 cut(s)	24, 426, 806, 809, 966
GlaI	GCGC	2 cut(s)	969, 1025
GluI	GCNGC	5 cut(s)	24, 426, 806, 809, 966
GsaI	CCCAGC	1 cut(s)	223
GsuI	CTGGAG	1 cut(s)	445
HaeIII	GGCC	4 cut(s)	93, 174, 488, 976
HapII	CCGG	3 cut(s)	284, 910, 962
HhaI	GCGC	2 cut(s)	970, 1026
Hin1II	CATG	6 cut(s)	41, 124, 202, 758, 856, 862
Hin6I	GCGC	2 cut(s)	968, 1024
HinP1I	GCGC	2 cut(s)	968, 1024
HindIII	AAGCTT	1 cut(s)	398
HinfI	GANTC	3 cut(s)	527, 592, 600
HpaII	CCGG	3 cut(s)	284, 910, 962
HphI	GGTGA	1 cut(s)	739
Hpy166II	GTNNAC	2 cut(s)	514, 646
Hpy188I	TCNGA	7 cut(s)	60, 357, 405, 419, 888, 893, 1014
Hpy188III	TCNNGA	2 cut(s)	274, 878
Hpy8I	GTNNAC	2 cut(s)	514, 646
HpyAV	CCTTC	8 cut(s)	129, 164, 215, 265, 323, 436, 610, 935
HpyCH4III	ACNGT	2 cut(s)	247, 748
HpyCH4V	TGCA	9 cut(s)	26, 143, 295, 316, 437, 534, 657, 692, 764
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 434, 443
HpyF3I	CTNAG	4 cut(s)	59, 209, 633, 914
Hsp92II	CATG	6 cut(s)	41, 124, 202, 758, 856, 862
HspAI	GCGC	2 cut(s)	968, 1024
Kzo9I	GATC	4 cut(s)	477, 708, 874, 888
Lsp1109I	GCAGC	5 cut(s)	10, 412, 817, 820, 952
MaeIII	GTNAC	4 cut(s)	241, 389, 628, 941
MalI	GATC	4 cut(s)	479, 710, 876, 890
MboI	GATC	4 cut(s)	477, 708, 874, 888
MboII	GAAGA	6 cut(s)	334, 536, 617, 794, 803, 1057
MfeI	CAATTG	1 cut(s)	995
MlsI	TGGCCA	1 cut(s)	976
MluCI	AATT	6 cut(s)	268, 297, 552, 664, 677, 995
MluNI	TGGCCA	1 cut(s)	976
MlyI	GAGTC	1 cut(s)	609
MnlI	CCTC	5 cut(s)	54, 283, 601, 605, 831
Mox20I	TGGCCA	1 cut(s)	976
MscI	TGGCCA	1 cut(s)	976
MseI	TTAA	2 cut(s)	621, 750
MslI	CAYNNNNRTG	1 cut(s)	857
Msp20I	TGGCCA	1 cut(s)	976
MspI	CCGG	3 cut(s)	284, 910, 962
MspR9I	CCNGG	3 cut(s)	910, 962, 983
MunI	CAATTG	1 cut(s)	995
MvaI	CCWGG	1 cut(s)	983
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	3 cut(s)	110, 434, 443
NciI	CCSGG	2 cut(s)	910, 962
NcoI	CCATGG	1 cut(s)	37
NdeII	GATC	4 cut(s)	477, 708, 874, 888
NlaIII	CATG	6 cut(s)	41, 124, 202, 758, 856, 862
NlaIV	GGNNCC	2 cut(s)	94, 131
NmuCI	GTSAC	1 cut(s)	628
NspI	RCATGY	1 cut(s)	856
PciI	ACATGT	1 cut(s)	852
PfeI	GAWTC	2 cut(s)	527, 592
PflMI	CCANNNNNTGG	1 cut(s)	520
PkrI	GCNGC	5 cut(s)	25, 427, 807, 810, 967
PleI	GAGTC	1 cut(s)	608
PpsI	GAGTC	1 cut(s)	608
PscI	ACATGT	1 cut(s)	852
Psp6I	CCWGG	1 cut(s)	981
PspFI	CCCAGC	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	981
PspN4I	GGNNCC	2 cut(s)	94, 131
PspPI	GGNCC	2 cut(s)	92, 307
RsaI	GTAC	6 cut(s)	215, 561, 685, 745, 857, 956
RsaNI	GTAC	6 cut(s)	214, 560, 684, 744, 856, 955
RseI	CAYNNNNRTG	1 cut(s)	857
SaqAI	TTAA	2 cut(s)	621, 750
SatI	GCNGC	5 cut(s)	24, 426, 806, 809, 966
Sau3AI	GATC	4 cut(s)	477, 708, 874, 888
Sau96I	GGNCC	2 cut(s)	92, 307
SchI	GAGTC	1 cut(s)	609
ScrFI	CCNGG	3 cut(s)	910, 962, 983
SinI	GGWCC	1 cut(s)	307
SmiMI	CAYNNNNRTG	1 cut(s)	857
SmlI	CTYRAG	1 cut(s)	822
SmoI	CTYRAG	1 cut(s)	822
Sse9I	AATT	6 cut(s)	268, 297, 552, 664, 677, 995
SsiI	CCGC	1 cut(s)	281
StyD4I	CCNGG	3 cut(s)	908, 960, 981
StyI	CCWWGG	1 cut(s)	37
TaaI	ACNGT	2 cut(s)	247, 748
TaqI	TCGA	3 cut(s)	497, 603, 711
TasI	AATT	6 cut(s)	268, 297, 552, 664, 677, 995
TatI	WGTACW	2 cut(s)	855, 954
TfiI	GAWTC	2 cut(s)	527, 592
Tru1I	TTAA	2 cut(s)	621, 750
Tru9I	TTAA	2 cut(s)	621, 750
TscAI	CASTG	1 cut(s)	469
TseFI	GTSAC	1 cut(s)	628
TseI	GCWGC	5 cut(s)	23, 425, 805, 808, 965
Tsp45I	GTSAC	1 cut(s)	628
TspDTI	ATGAA	5 cut(s)	106, 373, 455, 560, 564
TspGWI	ACGGA	1 cut(s)	166
TspRI	CASTG	1 cut(s)	469
Van91I	CCANNNNNTGG	1 cut(s)	520
VpaK11BI	GGWCC	1 cut(s)	307
XagI	CCTNNNNNAGG	1 cut(s)	314
XapI	RAATTY	2 cut(s)	297, 552
XceI	RCATGY	1 cut(s)	856

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.