pycom02g09160

Belongs to the UPP synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0002374
Physical Location & Seq
Forward (+)
6318814 .. 6319812
999 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g09160.1

Sequence Viewer

Length: 999 bp
ATGATGGAGAAAAACAGTGTGATTAGTGAAAGCGAAAGCAGGGCAATTGCAAGCCAAAAGTTGGGGGGTTTAAGCACTTTTCTGAGGAAATGCTTGTTCAGTGTTGTCTCTGTGGGCCCCATTCCTGAACACATAGCCTTCATCATGGATGGAAACAGAAGGTATGCAAAGAGGAGGAACTTGCCTGTTGGGGAAGGCCACAAAGCCGGATTTCTATCTCTCATGTCGATTCTCCGGTACTGCTACGAGTTGGGAGTGAAGTATGTGACAGTCTATGCCTTCAGCATTGACAATTTCAAGAGGCGGCCCGACGAGGTGAAAACTCTGATGGATTTGTTGCAGGAGAAGATTGAAGGGTTGCTAGAGAAAGAAAGCATTGTTAACCAGTATGGCATTCGGGTATACTTTATCGGTAACTTGAAGCTTTTGAACGAGTCTGTGAGGGTTGCTGCTGAGAAGGCAATGAAGGCCACTGCCAATAATTCAAAGGCTGTGCTTTTGATCTGTGTGGCTTATACTTCTTGTGATGAGATTGTCCATGCTGTTGAAGAATCCTGCAACGTGAAAAAGAGTGAAATTCGAGCACAGATTAATGGAACAAAGGGTGGCTGCAATGGCGGTATGGATGGAGAAGCAGGGTTAGATACTAGCGAAGATTGCAATGAGAAAGTTGAGGGGGAGGAGAAGGAAAACACAAGGGTTAAACATGTCGAAAAAGATGAAGGGGAATTTCTAGAGAGTGAGAAGCAGCTTCCTGTTGTAAAGGTAGTGGATGTTGAGAAGCACTTGTACATGTCAGTGGCACCTGATCCAGACATTTTGATTCGAACTTCAGGTGAGACACGCTTAAGCAATTTTCTGCTTTGGCAAACTTCTAACTGCCCGTTGTACTCCCCTGCTGCACTGTGGCCGGATTTGGGTATGTGGCACTTGGTTTGGGTAATTCTGAACTTCCAGAGAAACCACTACTATTTGGAGAAGAAAAGGAAGCAGATGTAA

Protein Analysis

333

Amino Acids

37.54

Weight (kDa)

6.68

Isoelectric Point (pI)

46.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prenyltransf PF01255 48 - 322 9.2e-69 Putative undecaprenyl diphosphate synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 802
AccB7I CCANNNNNTGG 1 cut(s) 61
AccI GTMKAC 1 cut(s) 402
AciI CCGC 2 cut(s) 304, 618
AclWI GGATC 1 cut(s) 803
AcoI YGGCCR 1 cut(s) 908
AcsI RAATTY 2 cut(s) 576, 728
AcuI CTGAAG 2 cut(s) 265, 816
AfaI GTAC 3 cut(s) 239, 791, 890
AfiI CCNNNNNNNGG 2 cut(s) 61, 917
AflII CTTAAG 1 cut(s) 847
AflIII ACRYGT 2 cut(s) 706, 792
AgsI TTSAA 6 cut(s) 298, 353, 421, 430, 486, 548
AluBI AGCT 2 cut(s) 424, 751
AluI AGCT 2 cut(s) 424, 751
Alw21I GWGCWC 1 cut(s) 586
Alw26I GTCTC 2 cut(s) 112, 833
AlwI GGATC 1 cut(s) 803
AoxI GGCC 5 cut(s) 115, 196, 305, 468, 908
ApaI GGGCCC 1 cut(s) 119
ApeKI GCWGC 4 cut(s) 449, 609, 748, 899
ApoI RAATTY 2 cut(s) 576, 728
AseI ATTAAT 1 cut(s) 591
AspS9I GGNCC 3 cut(s) 115, 116, 306
AsuHPI GGTGA 2 cut(s) 328, 848
AsuII TTCGAA 1 cut(s) 826
BaeGI GKGCMC 1 cut(s) 119
BanI GGYRCC 1 cut(s) 802
BanII GRGCYC 1 cut(s) 119
BarI GAAGNNNNNNTAC 2 cut(s) 773, 805
Bbv12I GWGCWC 1 cut(s) 586
BbvI GCAGC 4 cut(s) 436, 596, 760, 886
BccI CCATC 3 cut(s) 143, 322, 620
BcoDI GTCTC 2 cut(s) 112, 833
BfaI CTAG 3 cut(s) 362, 648, 734
BfrI CTTAAG 1 cut(s) 847
BisI GCNGC 5 cut(s) 305, 450, 610, 749, 900
BlsI GCNGC 5 cut(s) 306, 451, 611, 750, 901
BmgT120I GGNCC 3 cut(s) 115, 116, 306
BmiI GGNNCC 3 cut(s) 117, 118, 804
Bpu14I TTCGAA 1 cut(s) 826
BsaBI GATNNNNATC 1 cut(s) 214
BsaWI WCCGGW 1 cut(s) 234
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 917
Bse1I ACTGG 1 cut(s) 385
Bse3DI GCAATG 3 cut(s) 468, 619, 667
Bse8I GATNNNNATC 1 cut(s) 214
BseGI GGATG 3 cut(s) 154, 631, 778
BseJI GATNNNNATC 1 cut(s) 214
BseLI CCNNNNNNNGG 2 cut(s) 61, 917
BseMI GCAATG 3 cut(s) 468, 619, 667
BseMII CTCAG 2 cut(s) 74, 444
BseNI ACTGG 1 cut(s) 385
BseRI GAGGAG 2 cut(s) 187, 695
BseSI GKGCMC 1 cut(s) 119
BseXI GCAGC 4 cut(s) 436, 596, 760, 886
BsgI GTGCAG 1 cut(s) 885
BshFI GGCC 5 cut(s) 117, 198, 307, 470, 910
BshNI GGYRCC 1 cut(s) 802
BsiHKAI GWGCWC 1 cut(s) 586
BsiSI CCGG 3 cut(s) 207, 235, 911
BslI CCNNNNNNNGG 2 cut(s) 61, 917
BsmAI GTCTC 2 cut(s) 112, 833
BsmI GAATGC 1 cut(s) 393
BsnI GGCC 5 cut(s) 117, 198, 307, 470, 910
Bsp119I TTCGAA 1 cut(s) 826
Bsp120I GGGCCC 1 cut(s) 115
Bsp1286I GDGCHC 2 cut(s) 119, 586
Bsp1407I TGTACA 1 cut(s) 789
Bsp143I GATC 2 cut(s) 501, 808
BspACI CCGC 2 cut(s) 304, 618
BspANI GGCC 5 cut(s) 117, 198, 307, 470, 910
BspCNI CTCAG 2 cut(s) 75, 445
BspLI GGNNCC 3 cut(s) 117, 118, 804
BspPI GGATC 1 cut(s) 803
BspT104I TTCGAA 1 cut(s) 826
BspT107I GGYRCC 1 cut(s) 802
BspTI CTTAAG 1 cut(s) 847
BsrDI GCAATG 3 cut(s) 468, 619, 667
BsrGI TGTACA 1 cut(s) 789
BsrI ACTGG 1 cut(s) 385
BssMI GATC 2 cut(s) 501, 808
BssNAI GTATAC 1 cut(s) 403
Bst1107I GTATAC 1 cut(s) 403
Bst4CI ACNGT 3 cut(s) 17, 271, 906
BstAFI CTTAAG 1 cut(s) 847
BstAUI TGTACA 1 cut(s) 789
BstBI TTCGAA 1 cut(s) 826
BstC8I GCNNGC 1 cut(s) 52
BstDEI CTNAG 2 cut(s) 83, 453
BstF5I GGATG 3 cut(s) 154, 631, 778
BstKTI GATC 2 cut(s) 504, 811
BstMAI GTCTC 2 cut(s) 112, 833
BstMBI GATC 2 cut(s) 501, 808
BstMWI GCNNNNNNNGC 4 cut(s) 458, 467, 615, 657
BstNSI RCATGY 2 cut(s) 710, 796
BstSLI GKGCMC 1 cut(s) 119
BstV1I GCAGC 4 cut(s) 436, 596, 760, 886
BstZ17I GTATAC 1 cut(s) 403
BsuRI GGCC 5 cut(s) 117, 198, 307, 470, 910
BtsCI GGATG 3 cut(s) 154, 631, 778
BtsI GCAGTG 1 cut(s) 471
BtsIMutI CAGTG 5 cut(s) 22, 106, 471, 804, 902
Cac8I GCNNGC 1 cut(s) 52
Cfr13I GGNCC 3 cut(s) 115, 116, 306
Csp6I GTAC 3 cut(s) 238, 790, 889
CviAII CATG 5 cut(s) 145, 223, 539, 707, 793
CviQI GTAC 3 cut(s) 238, 790, 889
DdeI CTNAG 2 cut(s) 83, 453
DpnI GATC 2 cut(s) 503, 810
DpnII GATC 2 cut(s) 501, 808
EaeI YGGCCR 1 cut(s) 908
Eco24I GRGCYC 1 cut(s) 119
Eco57I CTGAAG 2 cut(s) 265, 816
EcoO109I RGGNCCY 1 cut(s) 116
EcoT38I GRGCYC 1 cut(s) 119
FaeI CATG 5 cut(s) 148, 226, 542, 710, 796
FatI CATG 5 cut(s) 144, 222, 538, 706, 792
FblI GTMKAC 1 cut(s) 402
Fnu4HI GCNGC 5 cut(s) 305, 450, 610, 749, 900
FokI GGATG 3 cut(s) 161, 638, 785
FriOI GRGCYC 1 cut(s) 119
Fsp4HI GCNGC 5 cut(s) 305, 450, 610, 749, 900
FspBI CTAG 3 cut(s) 362, 648, 734
GluI GCNGC 5 cut(s) 305, 450, 610, 749, 900
HaeIII GGCC 5 cut(s) 117, 198, 307, 470, 910
HapII CCGG 3 cut(s) 207, 235, 911
Hin1II CATG 5 cut(s) 148, 226, 542, 710, 796
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HindIII AAGCTT 1 cut(s) 422
HinfI GANTC 4 cut(s) 229, 434, 551, 823
HpaI GTTAAC 1 cut(s) 382
HpaII CCGG 3 cut(s) 207, 235, 911
HphI GGTGA 2 cut(s) 328, 848
Hpy166II GTNNAC 2 cut(s) 382, 403
Hpy188I TCNGA 3 cut(s) 84, 327, 948
Hpy188III TCNNGA 5 cut(s) 125, 298, 734, 812, 955
Hpy8I GTNNAC 2 cut(s) 382, 403
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 9 cut(s) 148, 153, 188, 289, 347, 451, 460, 679, 716
HpyCH4III ACNGT 3 cut(s) 17, 271, 906
HpyCH4IV ACGT 1 cut(s) 561
HpyCH4V TGCA 7 cut(s) 50, 167, 340, 558, 612, 660, 902
HpyF10VI GCNNNNNNNGC 4 cut(s) 458, 467, 615, 657
HpyF3I CTNAG 2 cut(s) 83, 453
HpySE526I ACGT 1 cut(s) 561
Hsp92II CATG 5 cut(s) 148, 226, 542, 710, 796
KspAI GTTAAC 1 cut(s) 382
Kzo9I GATC 2 cut(s) 501, 808
Lsp1109I GCAGC 4 cut(s) 436, 596, 760, 886
MaeI CTAG 3 cut(s) 362, 648, 734
MaeII ACGT 1 cut(s) 561
MaeIII GTNAC 2 cut(s) 265, 413
MalI GATC 2 cut(s) 503, 810
MboI GATC 2 cut(s) 501, 808
MboII GAAGA 4 cut(s) 358, 560, 665, 991
MfeI CAATTG 1 cut(s) 45
MhlI GDGCHC 2 cut(s) 119, 586
MluCI AATT 7 cut(s) 45, 292, 481, 576, 728, 853, 942
MlyI GAGTC 1 cut(s) 443
MnlI CCTC 8 cut(s) 78, 165, 168, 294, 307, 435, 667, 673
MseI TTAA 5 cut(s) 71, 381, 591, 702, 848
MslI CAYNNNNRTG 1 cut(s) 797
MspCI CTTAAG 1 cut(s) 847
MspI CCGG 3 cut(s) 207, 235, 911
MunI CAATTG 1 cut(s) 45
Mva1269I GAATGC 1 cut(s) 393
MwoI GCNNNNNNNGC 4 cut(s) 458, 467, 615, 657
NdeII GATC 2 cut(s) 501, 808
NlaIII CATG 5 cut(s) 148, 226, 542, 710, 796
NlaIV GGNNCC 3 cut(s) 117, 118, 804
NmuCI GTSAC 1 cut(s) 265
NspI RCATGY 2 cut(s) 710, 796
NspV TTCGAA 1 cut(s) 826
PciI ACATGT 2 cut(s) 706, 792
PctI GAATGC 1 cut(s) 393
PfeI GAWTC 3 cut(s) 229, 551, 823
PflMI CCANNNNNTGG 1 cut(s) 61
PkrI GCNGC 5 cut(s) 306, 451, 611, 750, 901
PleI GAGTC 1 cut(s) 442
PpsI GAGTC 1 cut(s) 442
PscI ACATGT 2 cut(s) 706, 792
PshBI ATTAAT 1 cut(s) 591
PspN4I GGNNCC 3 cut(s) 117, 118, 804
PspOMI GGGCCC 1 cut(s) 115
PspPI GGNCC 3 cut(s) 115, 116, 306
RsaI GTAC 3 cut(s) 239, 791, 890
RsaNI GTAC 3 cut(s) 238, 790, 889
RseI CAYNNNNRTG 1 cut(s) 797
SaqAI TTAA 5 cut(s) 71, 381, 591, 702, 848
SatI GCNGC 5 cut(s) 305, 450, 610, 749, 900
Sau3AI GATC 2 cut(s) 501, 808
Sau96I GGNCC 3 cut(s) 115, 116, 306
SchI GAGTC 1 cut(s) 443
SduI GDGCHC 2 cut(s) 119, 586
SetI ASST 8 cut(s) 164, 318, 426, 564, 753, 768, 808, 838
SfuI TTCGAA 1 cut(s) 826
SmiMI CAYNNNNRTG 1 cut(s) 797
SmlI CTYRAG 1 cut(s) 847
SmoI CTYRAG 1 cut(s) 847
Sse9I AATT 7 cut(s) 45, 292, 481, 576, 728, 853, 942
SsiI CCGC 2 cut(s) 304, 618
SspMI CTAG 3 cut(s) 362, 648, 734
TaaI ACNGT 3 cut(s) 17, 271, 906
TaiI ACGT 1 cut(s) 564
TaqI TCGA 4 cut(s) 227, 580, 711, 826
TasI AATT 7 cut(s) 45, 292, 481, 576, 728, 853, 942
TatI WGTACW 2 cut(s) 789, 888
TauI GCSGC 1 cut(s) 307
TfiI GAWTC 3 cut(s) 229, 551, 823
Tru1I TTAA 5 cut(s) 71, 381, 591, 702, 848
Tru9I TTAA 5 cut(s) 71, 381, 591, 702, 848
TscAI CASTG 5 cut(s) 22, 106, 478, 804, 909
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 4 cut(s) 449, 609, 748, 899
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 3 cut(s) 130, 479, 735
TspRI CASTG 5 cut(s) 22, 106, 478, 804, 909
Van91I CCANNNNNTGG 1 cut(s) 61
Vha464I CTTAAG 1 cut(s) 847
VspI ATTAAT 1 cut(s) 591
XapI RAATTY 2 cut(s) 576, 728
XbaI TCTAGA 1 cut(s) 733
XceI RCATGY 2 cut(s) 710, 796
XmiI GTMKAC 1 cut(s) 402
XspI CTAG 3 cut(s) 362, 648, 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.