Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002374

Physical Location & Seq

Genomic Coordinates Forward (+)

10081838 .. 10084282

Gene Structure 2445 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG112700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGGGTCGCGAATTCTGGTCTATCAGATTGTAAAGGGTCATCTTGGACTTAGTTGGTTAGCTTCTGCTCTTGGTCATACGATGGACGAACAAAGTCTTGTTGCTGCAAACCCAAGCCATGGGGGTTTCACTTCTTTTTTGAGGAAATGCTTGTTTAGTGTAATGTCTGTTGGCCCCATTCCTGCTCACATCGCGTTCATCATGGATGGGAACCGAAGGTATGCAAAGAGACGGAACTTACCAGTTGGGGAAGGCCACAAAGCTGGATACTGGTCTCTCATGTCCCTTCTTAGGTACTGCTGGGAAATGGGAGTGAAGTATGTAACTGTCTATGCCTTCAGCATTGACAATTTCAAGAGACCGCCGGACGAGGTAAAAATTCTAATGGACCTTTTGCAGGAGAAGATTGAAGGCTTGCTTGACAAAAGGAATTATCTGAACCAAGCTGGTGTTAGGGTATGCTTCATTGGTAACTTGAAGCTTCTGAGCGAGCCTGTCAGGGTTGCTGCTGAAAATGCAATGAAGGCGACTGCCAATAACTCCAATGCTACGCTTTTGATCTGTGTGGCCTATACTTCGACTGATGAGATTGTCCACGCTGTGGAAGAATCCTGCAAGGAGAAAATGAATGAAATTCAAGTACCTAATGGAAGAAAGGTTAGCAATGGTGTGATTCATGGAGTCAAAGAGGGAGGGAAGGTTAATGGTGTGACTGAGACTGATGTTCACAAATCCTGCAACAACAATTTCGATGGAGAATTAGGTACTGGTGCAGTTTCCAATGGTAAGATCGAAAGAGTTGAAAAGGTGAAAAAGGAAAATGGAACAGTTAGTCATGTAGTTGCAAGCAATGGTCTTGTTGAAGAAGTTGAAGAGAGTGGGGAGCAGCAGCAGAAAATACCTCGAGTAAAGCTGGTTGATGTTGAGAAGCACATGTACATGGCAGTGGCACCTGATCCCGACGTTCTGATCCGAACTTCTGGCGAGACCCGGTTGAGCAACTTCCTTCTTTGGCAAAGTAGTAACTGCCCATTGTACTGCCCGGCTGCGCTGTGGCCAGACCTGGGTTTATGGCAATTGGTTTGGGCAGTTCTGAACTTCCAGCGCAACCACTACTATTTGGAGAAGAAAAAGAAGCAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002094 GO:0003674 GO:0003824 GO:0004659 GO:0006066 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016093 GO:0016094 GO:0016740 GO:0016765 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046165 GO:0071704 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00900 ko01110 map00900 map01110

Pfam Domains

Protein Families

Prenyltransf

Protein Analysis

381

Amino Acids

42.42

Weight (kDa)

8.63

Isoelectric Point (pI)

40.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltransf	PF01255	67 - 211	1.6e-44	Putative undecaprenyl diphosphate synthase
Prenyltransf	PF01255	286 - 371	9.5e-22	Putative undecaprenyl diphosphate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17570
fragaria_vesca	FvH4_1g10471 FvH4_1g10471 FvH4_1g10480 FvH4_2g21620 FvH4_7g34231
malus_domestica	MD02G1118000.v1.1 MD02G1118200.v1.1 MD05G1029700.v1.1 MD15G1232700.v1.1
prunus_persica	Prupe.1G067500_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.8G224900_v2.0.a1 Prupe.8G224900_v2.0.a1
pyrus_communis	pycom02g09160 pycom05g02100
rosa_chinensis	RchiOBHm_Chr2g0097351 RchiOBHm_Chr6g0288291
rosa_laevigata	RLG00000012417 RLG00000016719 RLG00000017370
rosa_multiflora	Rmu_sc0001038.1_g000003
rosa_roxburghii	Rroxscaffold_2G00144750 Rroxscaffold_7G00180240
rosa_rugosa	Rorug02G0065900 Rorug06G0195300
rosa_samantha	Rh2AG112700 Rh2AG174400 Rh2BG115400 Rh2BG182100 Rh2CG117500 Rh2DG116700 Rh2DG180900 Rh6AG306500 Rh6BG312100 Rh6CG320100 Rh6DG305400
rosa_wichuraiana	Rw2G008820 Rw6G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	949
AccB7I	CCANNNNNTGG	2 cut(s)	119, 601
AccII	CGCG	2 cut(s)	10, 194
AciI	CCGC	1 cut(s)	362
AclWI	GGATC	2 cut(s)	950, 964
AcoI	YGGCCR	1 cut(s)	1055
AcsI	RAATTY	3 cut(s)	12, 378, 633
AcuI	CTGAAG	1 cut(s)	322
AdeI	CACNNNGTG	1 cut(s)	601
AfaI	GTAC	5 cut(s)	296, 642, 766, 938, 1037
AfiI	CCNNNNNNNGG	5 cut(s)	119, 291, 397, 601, 1064
AflIII	ACRYGT	1 cut(s)	933
AgsI	TTSAA	7 cut(s)	355, 410, 478, 638, 803, 863, 872
AjnI	CCWGG	1 cut(s)	1062
AluBI	AGCT	5 cut(s)	62, 263, 446, 481, 913
AluI	AGCT	5 cut(s)	62, 263, 446, 481, 913
Alw26I	GTCTC	5 cut(s)	223, 279, 352, 710, 980
AlwI	GGATC	2 cut(s)	950, 964
Ama87I	CYCGRG	1 cut(s)	903
AoxI	GGCC	4 cut(s)	172, 253, 567, 1055
ApeKI	GCWGC	5 cut(s)	104, 506, 886, 889, 1046
ApoI	RAATTY	3 cut(s)	12, 378, 633
AspLEI	GCGC	2 cut(s)	1051, 1107
AspS9I	GGNCC	2 cut(s)	173, 388
AsuC2I	CCSGG	2 cut(s)	991, 1043
AsuHPI	GGTGA	1 cut(s)	820
AvaI	CYCGRG	1 cut(s)	903
AvaII	GGWCC	1 cut(s)	388
BalI	TGGCCA	1 cut(s)	1057
BanI	GGYRCC	1 cut(s)	949
BarI	GAAGNNNNNNTAC	2 cut(s)	920, 952
BbvI	GCAGC	5 cut(s)	91, 493, 898, 901, 1033
BccI	CCATC	3 cut(s)	76, 200, 746
BciT130I	CCWGG	1 cut(s)	1064
BciVI	GTATCC	1 cut(s)	260
BcnI	CCSGG	2 cut(s)	991, 1043
BcoDI	GTCTC	5 cut(s)	223, 279, 352, 710, 980
BfuI	GTATCC	1 cut(s)	260
BisI	GCNGC	5 cut(s)	105, 507, 887, 890, 1047
BlsI	GCNGC	5 cut(s)	106, 508, 888, 891, 1048
Bme1390I	CCNGG	3 cut(s)	991, 1043, 1064
Bme18I	GGWCC	1 cut(s)	388
BmeT110I	CYCGRG	1 cut(s)	903
BmgT120I	GGNCC	2 cut(s)	173, 388
BmiI	GGNNCC	3 cut(s)	175, 212, 951
BmrFI	CCNGG	3 cut(s)	991, 1043, 1064
BpuMI	CCSGG	2 cut(s)	991, 1043
BsaI	GGTCTC	3 cut(s)	279, 352, 980
BsaJI	CCNNGG	2 cut(s)	118, 1063
BsaXI	ACNNNNNCTCC	2 cut(s)	684, 714
Bsc4I	CCNNNNNNNGG	5 cut(s)	119, 291, 397, 601, 1064
Bse1I	ACTGG	3 cut(s)	242, 275, 772
Bse3DI	GCAATG	3 cut(s)	525, 670, 856
BseBI	CCWGG	1 cut(s)	1064
BseDI	CCNNGG	2 cut(s)	118, 1063
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	5 cut(s)	119, 291, 397, 601, 1064
BseMI	GCAATG	3 cut(s)	525, 670, 856
BseMII	CTCAG	2 cut(s)	476, 705
BseNI	ACTGG	3 cut(s)	242, 275, 772
BseXI	GCAGC	5 cut(s)	91, 493, 898, 901, 1033
BseYI	CCCAGC	1 cut(s)	300
BsgI	GTGCAG	1 cut(s)	792
Bsh1236I	CGCG	2 cut(s)	10, 194
BshFI	GGCC	4 cut(s)	174, 255, 569, 1057
BshNI	GGYRCC	1 cut(s)	949
BsiHKCI	CYCGRG	1 cut(s)	903
BsiSI	CCGG	3 cut(s)	365, 991, 1043
BslFI	GGGAC	1 cut(s)	268
BslI	CCNNNNNNNGG	5 cut(s)	119, 291, 397, 601, 1064
BsmAI	GTCTC	5 cut(s)	223, 279, 352, 710, 980
BsmBI	CGTCTC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	268
BsnI	GGCC	4 cut(s)	174, 255, 569, 1057
Bso31I	GGTCTC	3 cut(s)	279, 352, 980
BsoBI	CYCGRG	1 cut(s)	903
Bsp1407I	TGTACA	1 cut(s)	936
Bsp143I	GATC	4 cut(s)	558, 789, 955, 969
Bsp19I	CCATGG	1 cut(s)	118
Bsp68I	TCGCGA	1 cut(s)	10
BspACI	CCGC	1 cut(s)	362
BspANI	GGCC	4 cut(s)	174, 255, 569, 1057
BspCNI	CTCAG	2 cut(s)	477, 706
BspFNI	CGCG	2 cut(s)	10, 194
BspLI	GGNNCC	3 cut(s)	175, 212, 951
BspPI	GGATC	2 cut(s)	950, 964
BspT107I	GGYRCC	1 cut(s)	949
BspTNI	GGTCTC	3 cut(s)	279, 352, 980
BsrDI	GCAATG	3 cut(s)	525, 670, 856
BsrGI	TGTACA	1 cut(s)	936
BsrI	ACTGG	3 cut(s)	242, 275, 772
BssECI	CCNNGG	2 cut(s)	118, 1063
BssMI	GATC	4 cut(s)	558, 789, 955, 969
BssT1I	CCWWGG	1 cut(s)	118
Bst2UI	CCWGG	1 cut(s)	1064
Bst4CI	ACNGT	2 cut(s)	328, 829
Bst6I	CTCTTC	1 cut(s)	867
BstAUI	TGTACA	1 cut(s)	936
BstC8I	GCNNGC	4 cut(s)	416, 491, 847, 1140
BstDEI	CTNAG	4 cut(s)	50, 290, 485, 714
BstDSI	CCRYGG	1 cut(s)	118
BstENI	CCTNNNNNAGG	1 cut(s)	395
BstF5I	GGATG	1 cut(s)	211
BstFNI	CGCG	2 cut(s)	10, 194
BstHHI	GCGC	2 cut(s)	1051, 1107
BstKTI	GATC	4 cut(s)	561, 792, 958, 972
BstMAI	GTCTC	5 cut(s)	223, 279, 352, 710, 980
BstMBI	GATC	4 cut(s)	558, 789, 955, 969
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 515, 524
BstNI	CCWGG	1 cut(s)	1064
BstNSI	RCATGY	1 cut(s)	937
BstSCI	CCNGG	3 cut(s)	989, 1041, 1062
BstUI	CGCG	2 cut(s)	10, 194
BstV1I	GCAGC	5 cut(s)	91, 493, 898, 901, 1033
BstXI	CCANNNNNNTGG	1 cut(s)	263
BsuI	GTATCC	1 cut(s)	260
BsuRI	GGCC	4 cut(s)	174, 255, 569, 1057
BtgI	CCRYGG	1 cut(s)	118
BtgZI	GCGATG	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	211
BtsI	GCAGTG	1 cut(s)	951
BtsIMutI	CAGTG	1 cut(s)	951
BtuMI	TCGCGA	1 cut(s)	10
Cac8I	GCNNGC	4 cut(s)	416, 491, 847, 1140
CfoI	GCGC	2 cut(s)	1051, 1107
Cfr13I	GGNCC	2 cut(s)	173, 388
Csp6I	GTAC	5 cut(s)	295, 641, 765, 937, 1036
CviAII	CATG	7 cut(s)	119, 202, 280, 677, 836, 934, 940
CviQI	GTAC	5 cut(s)	295, 641, 765, 937, 1036
DdeI	CTNAG	4 cut(s)	50, 290, 485, 714
DpnI	GATC	4 cut(s)	560, 791, 957, 971
DpnII	GATC	4 cut(s)	558, 789, 955, 969
DraIII	CACNNNGTG	1 cut(s)	601
EaeI	YGGCCR	1 cut(s)	1055
Eam1104I	CTCTTC	1 cut(s)	867
EarI	CTCTTC	1 cut(s)	867
Eco130I	CCWWGG	1 cut(s)	118
Eco31I	GGTCTC	3 cut(s)	279, 352, 980
Eco47I	GGWCC	1 cut(s)	388
Eco57I	CTGAAG	1 cut(s)	322
Eco88I	CYCGRG	1 cut(s)	903
EcoNI	CCTNNNNNAGG	1 cut(s)	395
EcoRI	GAATTC	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	1062
EcoT14I	CCWWGG	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	118
Esp3I	CGTCTC	1 cut(s)	223
FaeI	CATG	7 cut(s)	122, 205, 283, 680, 839, 937, 943
FalI	AAGNNNNNCTT	2 cut(s)	402, 434
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	7 cut(s)	118, 201, 279, 676, 835, 933, 939
Fnu4HI	GCNGC	5 cut(s)	105, 507, 887, 890, 1047
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	5 cut(s)	105, 507, 887, 890, 1047
GlaI	GCGC	2 cut(s)	1050, 1106
GluI	GCNGC	5 cut(s)	105, 507, 887, 890, 1047
GsaI	CCCAGC	1 cut(s)	304
HaeIII	GGCC	4 cut(s)	174, 255, 569, 1057
HapII	CCGG	3 cut(s)	365, 991, 1043
HhaI	GCGC	2 cut(s)	1051, 1107
Hin1II	CATG	7 cut(s)	122, 205, 283, 680, 839, 937, 943
Hin6I	GCGC	2 cut(s)	1049, 1105
HinP1I	GCGC	2 cut(s)	1049, 1105
HindIII	AAGCTT	1 cut(s)	479
HinfI	GANTC	3 cut(s)	608, 673, 681
HpaII	CCGG	3 cut(s)	365, 991, 1043
HphI	GGTGA	1 cut(s)	820
Hpy166II	GTNNAC	2 cut(s)	595, 727
Hpy188I	TCNGA	6 cut(s)	27, 438, 486, 969, 974, 1095
Hpy188III	TCNNGA	3 cut(s)	9, 355, 959
Hpy8I	GTNNAC	2 cut(s)	595, 727
Hpy99I	CGWCG	1 cut(s)	965
HpyAV	CCTTC	8 cut(s)	210, 245, 296, 346, 404, 517, 691, 1016
HpyCH4III	ACNGT	2 cut(s)	328, 829
HpyCH4IV	ACGT	1 cut(s)	963
HpyCH4V	TGCA	8 cut(s)	107, 224, 397, 518, 615, 738, 773, 845
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 515, 524
HpyF3I	CTNAG	4 cut(s)	50, 290, 485, 714
HpySE526I	ACGT	1 cut(s)	963
Hsp92II	CATG	7 cut(s)	122, 205, 283, 680, 839, 937, 943
HspAI	GCGC	2 cut(s)	1049, 1105
Kzo9I	GATC	4 cut(s)	558, 789, 955, 969
LmnI	GCTCC	1 cut(s)	883
Lsp1109I	GCAGC	5 cut(s)	91, 493, 898, 901, 1033
MaeII	ACGT	1 cut(s)	963
MaeIII	GTNAC	4 cut(s)	322, 470, 709, 1022
MalI	GATC	4 cut(s)	560, 791, 957, 971
MboI	GATC	4 cut(s)	558, 789, 955, 969
MboII	GAAGA	6 cut(s)	415, 617, 663, 875, 884, 1138
MfeI	CAATTG	1 cut(s)	1076
MlsI	TGGCCA	1 cut(s)	1057
MluCI	AATT	8 cut(s)	12, 349, 378, 430, 633, 745, 758, 1076
MluNI	TGGCCA	1 cut(s)	1057
MlyI	GAGTC	1 cut(s)	690
MnlI	CCTC	5 cut(s)	135, 364, 682, 686, 912
Mox20I	TGGCCA	1 cut(s)	1057
MscI	TGGCCA	1 cut(s)	1057
MseI	TTAA	1 cut(s)	702
MslI	CAYNNNNRTG	2 cut(s)	938, 944
Msp20I	TGGCCA	1 cut(s)	1057
MspI	CCGG	3 cut(s)	365, 991, 1043
MspR9I	CCNGG	3 cut(s)	991, 1043, 1064
MunI	CAATTG	1 cut(s)	1076
MvaI	CCWGG	1 cut(s)	1064
MvnI	CGCG	2 cut(s)	10, 194
MwoI	GCNNNNNNNGC	3 cut(s)	191, 515, 524
NciI	CCSGG	2 cut(s)	991, 1043
NcoI	CCATGG	1 cut(s)	118
NdeII	GATC	4 cut(s)	558, 789, 955, 969
NlaIII	CATG	7 cut(s)	122, 205, 283, 680, 839, 937, 943
NlaIV	GGNNCC	3 cut(s)	175, 212, 951
NmuCI	GTSAC	1 cut(s)	709
NruI	TCGCGA	1 cut(s)	10
NspI	RCATGY	1 cut(s)	937
PaeR7I	CTCGAG	1 cut(s)	903
PciI	ACATGT	1 cut(s)	933
PfeI	GAWTC	2 cut(s)	608, 673
PflMI	CCANNNNNTGG	2 cut(s)	119, 601
PkrI	GCNGC	5 cut(s)	106, 508, 888, 891, 1048
PleI	GAGTC	1 cut(s)	689
PpsI	GAGTC	1 cut(s)	689
PscI	ACATGT	1 cut(s)	933
Psp6I	CCWGG	1 cut(s)	1062
PspFI	CCCAGC	1 cut(s)	300
PspGI	CCWGG	1 cut(s)	1062
PspN4I	GGNNCC	3 cut(s)	175, 212, 951
PspPI	GGNCC	2 cut(s)	173, 388
PspXI	VCTCGAGB	1 cut(s)	903
RruI	TCGCGA	1 cut(s)	10
RsaI	GTAC	5 cut(s)	296, 642, 766, 938, 1037
RsaNI	GTAC	5 cut(s)	295, 641, 765, 937, 1036
RseI	CAYNNNNRTG	2 cut(s)	938, 944
SaqAI	TTAA	1 cut(s)	702
SatI	GCNGC	5 cut(s)	105, 507, 887, 890, 1047
Sau3AI	GATC	4 cut(s)	558, 789, 955, 969
Sau96I	GGNCC	2 cut(s)	173, 388
SchI	GAGTC	1 cut(s)	690
ScrFI	CCNGG	3 cut(s)	991, 1043, 1064
Sfr274I	CTCGAG	1 cut(s)	903
SinI	GGWCC	1 cut(s)	388
SlaI	CTCGAG	1 cut(s)	903
SmiMI	CAYNNNNRTG	2 cut(s)	938, 944
SmlI	CTYRAG	1 cut(s)	903
SmoI	CTYRAG	1 cut(s)	903
Sse9I	AATT	8 cut(s)	12, 349, 378, 430, 633, 745, 758, 1076
SsiI	CCGC	1 cut(s)	362
StyD4I	CCNGG	3 cut(s)	989, 1041, 1062
StyI	CCWWGG	1 cut(s)	118
TaaI	ACNGT	2 cut(s)	328, 829
TaiI	ACGT	1 cut(s)	966
TaqI	TCGA	4 cut(s)	578, 750, 792, 904
TasI	AATT	8 cut(s)	12, 349, 378, 430, 633, 745, 758, 1076
TatI	WGTACW	2 cut(s)	936, 1035
TfiI	GAWTC	2 cut(s)	608, 673
Tru1I	TTAA	1 cut(s)	702
Tru9I	TTAA	1 cut(s)	702
TscAI	CASTG	1 cut(s)	951
TseFI	GTSAC	1 cut(s)	709
TseI	GCWGC	5 cut(s)	104, 506, 886, 889, 1046
Tsp45I	GTSAC	1 cut(s)	709
TspDTI	ATGAA	6 cut(s)	187, 454, 536, 641, 645, 665
TspGWI	ACGGA	1 cut(s)	247
TspRI	CASTG	1 cut(s)	951
Van91I	CCANNNNNTGG	2 cut(s)	119, 601
VpaK11BI	GGWCC	1 cut(s)	388
XagI	CCTNNNNNAGG	1 cut(s)	395
XapI	RAATTY	3 cut(s)	12, 378, 633
XceI	RCATGY	1 cut(s)	937
XhoI	CTCGAG	1 cut(s)	903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.