Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002374

Physical Location & Seq

Genomic Coordinates Forward (+)

9604125 .. 9606886

Gene Structure 2762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1118000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGATGGAGAAAAACATTGTGATTAGTGAAAGCGAAAGCAGGGCAATTGCAAGCCAAAAGTTGGGGGGTTTAGGCACTTTTCTGAGGAAATGCTTGTTCAGTGTTGTCTCTGTGGGCCCCATTCCTGAACACATAGCCTTCATCATGGATGGAAACAGAAGGTATGCAAAGAGGAGGAACTTGCCTGTTGGGGAAGGCCACAAAGCCGGATTTTTATCTCTCATGTCGATTCTCCGGTACTGCTACGAGTTGGGAGTGAAGTATGTGACAGTGTATGCCTTCAGCATTGACAATTTCAAGAGGCGGCCCGACGAGGTGAAAACTCTGATGGATTTGTTGCAGGAGAAGATTGAAGGGTTGCTTGAGAAAGAAAGTATTGTAAACCAGTTTGGCATTCGGGTATACTTTATCGGTAACTTGAAGCTTTTGAATGAGTCTGTGAGGGTTGCTGCTGAGAAGGCAATGAAGGCCACTGCCAATAATTCAAAGGCTGTGCTTTTGATCTGTGTGGCTTATACTTCTTGTGATGAGATTGTCCATGCTGTTGAAGAATCCTGCAACATGAAAAAGAGCGAAATTCGAGCACAGATTAACGGAACAAAGGGTGGCTGCAATGGCGGTATGGATGGAGAAGCGGGGTTAGATACTAGCGAAGCTTGCAATGAGAAAGTTGAGGGGGAGGAGAAGGAAAACGCAAGGGTTAAACATGTCGAAAAAGGTGAAGGGGAATTTCTTGAGAATGAGAAGCAGCTTCCTGTTGTAAAGGTAGTGGATGTTGAGAAGCACTTGTACATGTCAGTGGCACCTGATCCAGACATTTTGATTCGAACTTCAGGTGAGACACGCTTAAGCAATTTTCTGCTTTGGCAAACTTCTAACTGCCCGTTGTACTCCCCTGCTGCACTGTGGCCGGATTTGGGTATGTGGCACTTGGTTTGGGTAATTCTGAACTTCCAGAGAAACCACTACTATTTGGAGAAGAAAAGGAAGCAGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002094 GO:0003674 GO:0003824 GO:0004659 GO:0006066 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016093 GO:0016094 GO:0016740 GO:0016765 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046165 GO:0071704 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00900 ko01110 map00900 map01110

Pfam Domains

Protein Families

Prenyltransf

Protein Analysis

333

Amino Acids

37.44

Weight (kDa)

7.56

Isoelectric Point (pI)

46.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltransf	PF01255	48 - 322	1.4e-68	Putative undecaprenyl diphosphate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17570
fragaria_vesca	FvH4_1g10471 FvH4_1g10471 FvH4_1g10480 FvH4_2g21620 FvH4_7g34231
malus_domestica	MD02G1118000.v1.1 MD02G1118200.v1.1 MD05G1029700.v1.1 MD15G1232700.v1.1
prunus_persica	Prupe.1G067500_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.8G224900_v2.0.a1 Prupe.8G224900_v2.0.a1
pyrus_communis	pycom02g09160 pycom05g02100
rosa_chinensis	RchiOBHm_Chr2g0097351 RchiOBHm_Chr6g0288291
rosa_laevigata	RLG00000012417 RLG00000016719 RLG00000017370
rosa_multiflora	Rmu_sc0001038.1_g000003
rosa_roxburghii	Rroxscaffold_2G00144750 Rroxscaffold_7G00180240
rosa_rugosa	Rorug02G0065900 Rorug06G0195300
rosa_samantha	Rh2AG112700 Rh2AG174400 Rh2BG115400 Rh2BG182100 Rh2CG117500 Rh2DG116700 Rh2DG180900 Rh6AG306500 Rh6BG312100 Rh6CG320100 Rh6DG305400
rosa_wichuraiana	Rw2G008820 Rw6G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	802
AccB7I	CCANNNNNTGG	1 cut(s)	61
AccI	GTMKAC	1 cut(s)	402
AciI	CCGC	3 cut(s)	304, 618, 635
AclWI	GGATC	1 cut(s)	803
AcoI	YGGCCR	1 cut(s)	908
AcsI	RAATTY	2 cut(s)	576, 728
AcuI	CTGAAG	2 cut(s)	265, 816
AfaI	GTAC	3 cut(s)	239, 791, 890
AfiI	CCNNNNNNNGG	2 cut(s)	61, 917
AflII	CTTAAG	1 cut(s)	847
AflIII	ACRYGT	2 cut(s)	706, 792
AgsI	TTSAA	6 cut(s)	298, 353, 421, 430, 486, 548
AluBI	AGCT	3 cut(s)	424, 656, 751
AluI	AGCT	3 cut(s)	424, 656, 751
Alw21I	GWGCWC	1 cut(s)	586
Alw26I	GTCTC	2 cut(s)	112, 833
AlwI	GGATC	1 cut(s)	803
AoxI	GGCC	5 cut(s)	115, 196, 305, 468, 908
ApaI	GGGCCC	1 cut(s)	119
ApeKI	GCWGC	4 cut(s)	449, 609, 748, 899
ApoI	RAATTY	2 cut(s)	576, 728
AspS9I	GGNCC	3 cut(s)	115, 116, 306
AsuHPI	GGTGA	3 cut(s)	328, 731, 848
AsuII	TTCGAA	1 cut(s)	826
BaeGI	GKGCMC	1 cut(s)	119
BanI	GGYRCC	1 cut(s)	802
BanII	GRGCYC	1 cut(s)	119
BarI	GAAGNNNNNNTAC	2 cut(s)	773, 805
Bbv12I	GWGCWC	1 cut(s)	586
BbvI	GCAGC	4 cut(s)	436, 596, 760, 886
BccI	CCATC	3 cut(s)	143, 322, 620
BcoDI	GTCTC	2 cut(s)	112, 833
BfaI	CTAG	1 cut(s)	648
BfrI	CTTAAG	1 cut(s)	847
BisI	GCNGC	5 cut(s)	305, 450, 610, 749, 900
BlsI	GCNGC	5 cut(s)	306, 451, 611, 750, 901
BmgT120I	GGNCC	3 cut(s)	115, 116, 306
BmiI	GGNNCC	3 cut(s)	117, 118, 804
Bpu14I	TTCGAA	1 cut(s)	826
BpuEI	CTTGAG	2 cut(s)	383, 755
BsaBI	GATNNNNATC	1 cut(s)	214
BsaWI	WCCGGW	1 cut(s)	234
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 917
Bse1I	ACTGG	1 cut(s)	385
Bse3DI	GCAATG	3 cut(s)	468, 619, 667
Bse8I	GATNNNNATC	1 cut(s)	214
BseGI	GGATG	3 cut(s)	154, 631, 778
BseJI	GATNNNNATC	1 cut(s)	214
BseLI	CCNNNNNNNGG	2 cut(s)	61, 917
BseMI	GCAATG	3 cut(s)	468, 619, 667
BseMII	CTCAG	2 cut(s)	74, 444
BseNI	ACTGG	1 cut(s)	385
BseRI	GAGGAG	2 cut(s)	187, 695
BseSI	GKGCMC	1 cut(s)	119
BseXI	GCAGC	4 cut(s)	436, 596, 760, 886
BsgI	GTGCAG	1 cut(s)	885
BshFI	GGCC	5 cut(s)	117, 198, 307, 470, 910
BshNI	GGYRCC	1 cut(s)	802
BsiHKAI	GWGCWC	1 cut(s)	586
BsiSI	CCGG	3 cut(s)	207, 235, 911
BslI	CCNNNNNNNGG	2 cut(s)	61, 917
BsmAI	GTCTC	2 cut(s)	112, 833
BsmI	GAATGC	1 cut(s)	393
BsnI	GGCC	5 cut(s)	117, 198, 307, 470, 910
Bsp119I	TTCGAA	1 cut(s)	826
Bsp120I	GGGCCC	1 cut(s)	115
Bsp1286I	GDGCHC	2 cut(s)	119, 586
Bsp1407I	TGTACA	1 cut(s)	789
Bsp143I	GATC	2 cut(s)	501, 808
BspACI	CCGC	3 cut(s)	304, 618, 635
BspANI	GGCC	5 cut(s)	117, 198, 307, 470, 910
BspCNI	CTCAG	2 cut(s)	75, 445
BspLI	GGNNCC	3 cut(s)	117, 118, 804
BspPI	GGATC	1 cut(s)	803
BspT104I	TTCGAA	1 cut(s)	826
BspT107I	GGYRCC	1 cut(s)	802
BspTI	CTTAAG	1 cut(s)	847
BsrDI	GCAATG	3 cut(s)	468, 619, 667
BsrGI	TGTACA	1 cut(s)	789
BsrI	ACTGG	1 cut(s)	385
BssMI	GATC	2 cut(s)	501, 808
BssNAI	GTATAC	1 cut(s)	403
Bst1107I	GTATAC	1 cut(s)	403
Bst4CI	ACNGT	2 cut(s)	271, 906
BstAFI	CTTAAG	1 cut(s)	847
BstAUI	TGTACA	1 cut(s)	789
BstBI	TTCGAA	1 cut(s)	826
BstC8I	GCNNGC	2 cut(s)	52, 658
BstDEI	CTNAG	2 cut(s)	83, 453
BstF5I	GGATG	3 cut(s)	154, 631, 778
BstKTI	GATC	2 cut(s)	504, 811
BstMAI	GTCTC	2 cut(s)	112, 833
BstMBI	GATC	2 cut(s)	501, 808
BstMWI	GCNNNNNNNGC	4 cut(s)	458, 467, 615, 657
BstNSI	RCATGY	2 cut(s)	710, 796
BstSLI	GKGCMC	1 cut(s)	119
BstV1I	GCAGC	4 cut(s)	436, 596, 760, 886
BstZ17I	GTATAC	1 cut(s)	403
BsuRI	GGCC	5 cut(s)	117, 198, 307, 470, 910
BtsCI	GGATG	3 cut(s)	154, 631, 778
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	5 cut(s)	106, 276, 471, 804, 902
Cac8I	GCNNGC	2 cut(s)	52, 658
Cfr13I	GGNCC	3 cut(s)	115, 116, 306
Csp6I	GTAC	3 cut(s)	238, 790, 889
CviAII	CATG	6 cut(s)	145, 223, 539, 562, 707, 793
CviQI	GTAC	3 cut(s)	238, 790, 889
DdeI	CTNAG	2 cut(s)	83, 453
DpnI	GATC	2 cut(s)	503, 810
DpnII	GATC	2 cut(s)	501, 808
EaeI	YGGCCR	1 cut(s)	908
Eco24I	GRGCYC	1 cut(s)	119
Eco57I	CTGAAG	2 cut(s)	265, 816
EcoO109I	RGGNCCY	1 cut(s)	116
EcoT38I	GRGCYC	1 cut(s)	119
FaeI	CATG	6 cut(s)	148, 226, 542, 565, 710, 796
FalI	AAGNNNNNCTT	2 cut(s)	345, 377
FatI	CATG	6 cut(s)	144, 222, 538, 561, 706, 792
FauI	CCCGC	1 cut(s)	628
FblI	GTMKAC	1 cut(s)	402
Fnu4HI	GCNGC	5 cut(s)	305, 450, 610, 749, 900
FokI	GGATG	3 cut(s)	161, 638, 785
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	5 cut(s)	305, 450, 610, 749, 900
FspBI	CTAG	1 cut(s)	648
GluI	GCNGC	5 cut(s)	305, 450, 610, 749, 900
HaeIII	GGCC	5 cut(s)	117, 198, 307, 470, 910
HapII	CCGG	3 cut(s)	207, 235, 911
Hin1II	CATG	6 cut(s)	148, 226, 542, 565, 710, 796
HindIII	AAGCTT	2 cut(s)	422, 654
HinfI	GANTC	4 cut(s)	229, 434, 551, 823
HpaII	CCGG	3 cut(s)	207, 235, 911
HphI	GGTGA	3 cut(s)	328, 731, 848
Hpy166II	GTNNAC	2 cut(s)	382, 403
Hpy188I	TCNGA	3 cut(s)	84, 327, 948
Hpy188III	TCNNGA	5 cut(s)	125, 298, 734, 812, 955
Hpy8I	GTNNAC	2 cut(s)	382, 403
Hpy99I	CGWCG	1 cut(s)	314
HpyAV	CCTTC	9 cut(s)	148, 153, 188, 289, 347, 451, 460, 679, 716
HpyCH4III	ACNGT	2 cut(s)	271, 906
HpyCH4V	TGCA	7 cut(s)	50, 167, 340, 558, 612, 660, 902
HpyF10VI	GCNNNNNNNGC	4 cut(s)	458, 467, 615, 657
HpyF3I	CTNAG	2 cut(s)	83, 453
Hsp92II	CATG	6 cut(s)	148, 226, 542, 565, 710, 796
Kzo9I	GATC	2 cut(s)	501, 808
Lsp1109I	GCAGC	4 cut(s)	436, 596, 760, 886
MaeI	CTAG	1 cut(s)	648
MaeIII	GTNAC	2 cut(s)	265, 413
MalI	GATC	2 cut(s)	503, 810
MboI	GATC	2 cut(s)	501, 808
MboII	GAAGA	3 cut(s)	358, 560, 991
MfeI	CAATTG	1 cut(s)	45
MhlI	GDGCHC	2 cut(s)	119, 586
MluCI	AATT	7 cut(s)	45, 292, 481, 576, 728, 853, 942
MlyI	GAGTC	1 cut(s)	443
MnlI	CCTC	8 cut(s)	78, 165, 168, 294, 307, 435, 667, 673
MseI	TTAA	3 cut(s)	591, 702, 848
MslI	CAYNNNNRTG	1 cut(s)	797
MspCI	CTTAAG	1 cut(s)	847
MspI	CCGG	3 cut(s)	207, 235, 911
MunI	CAATTG	1 cut(s)	45
Mva1269I	GAATGC	1 cut(s)	393
MwoI	GCNNNNNNNGC	4 cut(s)	458, 467, 615, 657
NdeII	GATC	2 cut(s)	501, 808
NlaIII	CATG	6 cut(s)	148, 226, 542, 565, 710, 796
NlaIV	GGNNCC	3 cut(s)	117, 118, 804
NmuCI	GTSAC	1 cut(s)	265
NspI	RCATGY	2 cut(s)	710, 796
NspV	TTCGAA	1 cut(s)	826
PciI	ACATGT	2 cut(s)	706, 792
PctI	GAATGC	1 cut(s)	393
PfeI	GAWTC	3 cut(s)	229, 551, 823
PflMI	CCANNNNNTGG	1 cut(s)	61
PkrI	GCNGC	5 cut(s)	306, 451, 611, 750, 901
PleI	GAGTC	1 cut(s)	442
PpsI	GAGTC	1 cut(s)	442
PscI	ACATGT	2 cut(s)	706, 792
PspN4I	GGNNCC	3 cut(s)	117, 118, 804
PspOMI	GGGCCC	1 cut(s)	115
PspPI	GGNCC	3 cut(s)	115, 116, 306
RsaI	GTAC	3 cut(s)	239, 791, 890
RsaNI	GTAC	3 cut(s)	238, 790, 889
RseI	CAYNNNNRTG	1 cut(s)	797
SaqAI	TTAA	3 cut(s)	591, 702, 848
SatI	GCNGC	5 cut(s)	305, 450, 610, 749, 900
Sau3AI	GATC	2 cut(s)	501, 808
Sau96I	GGNCC	3 cut(s)	115, 116, 306
SchI	GAGTC	1 cut(s)	443
SduI	GDGCHC	2 cut(s)	119, 586
SetI	ASST	9 cut(s)	164, 318, 426, 658, 721, 753, 768, 808, 838
SfuI	TTCGAA	1 cut(s)	826
SmiMI	CAYNNNNRTG	1 cut(s)	797
SmlI	CTYRAG	3 cut(s)	362, 734, 847
SmoI	CTYRAG	3 cut(s)	362, 734, 847
Sse9I	AATT	7 cut(s)	45, 292, 481, 576, 728, 853, 942
SsiI	CCGC	3 cut(s)	304, 618, 635
SspMI	CTAG	1 cut(s)	648
TaaI	ACNGT	2 cut(s)	271, 906
TaqI	TCGA	4 cut(s)	227, 580, 711, 826
TasI	AATT	7 cut(s)	45, 292, 481, 576, 728, 853, 942
TatI	WGTACW	2 cut(s)	789, 888
TauI	GCSGC	1 cut(s)	307
TfiI	GAWTC	3 cut(s)	229, 551, 823
Tru1I	TTAA	3 cut(s)	591, 702, 848
Tru9I	TTAA	3 cut(s)	591, 702, 848
TscAI	CASTG	5 cut(s)	106, 276, 478, 804, 909
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	4 cut(s)	449, 609, 748, 899
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	3 cut(s)	130, 479, 578
TspGWI	ACGGA	1 cut(s)	609
TspRI	CASTG	5 cut(s)	106, 276, 478, 804, 909
Van91I	CCANNNNNTGG	1 cut(s)	61
Vha464I	CTTAAG	1 cut(s)	847
XapI	RAATTY	2 cut(s)	576, 728
XceI	RCATGY	2 cut(s)	710, 796
XmiI	GTMKAC	1 cut(s)	402
XspI	CTAG	1 cut(s)	648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.