RLG00000012417

Belongs to the UPP synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002374
Physical Location & Seq
Forward (+)
18603634 .. 18605222
1589 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012417

Sequence Viewer

Length: 873 bp
ATGGAGAAAAGCAGTGGCAGTAGAGCAAACCAAATTTTTTGGAGCATAGTTAGTTTCTTAAGGAGATGTCTTTTTCTTGTGATTTGTGCTCGTCCTATACCTCATCACATTGCCTTCATCATGGACGGAAATAGAAGGTATGCTAAAAAGCGGAAGTTGATGGAAGGGACTGGACATAGGGTTGGTTTTGTAGCTCTCATGTCCATGCTCAAGTACTGTTATGAGTTGGGTGTGAGATATGTAACAATATATGCTTTTAGTATTGAGAACTTCAAAAGGCGACCTGAAGAGGTTCAATCCTTGATGGACCTGATGCAGGAGAAAATTGAAGGGTTAATTAAAGAAGAGAGCATAGTTAATCGCTATGGACTTAAGGTGCACTTTATTGGGAACCTAAAACTCTTGAGCGAACCTGTCAGGTTGGCTGCAGAGAGGGCTATGGTGGCAACTGCAAATAACTCTAGAGGAGTGCTATCAATATGTATTGCCTACACATCTACTGATGAGATTGTGCATGCCGTTCAAGAGTCATGTGAAGAAAAATGGAATGAAATTAGTGTATTGAATGCTAGTGGAGCTGGGTATGGTCTAGATAAATTTGGAGAGAATGAGAAGGATGAAAGGGAAATCATTGTAAAATTGACAGATATTGAAAGGCATATGTATATGGCAGTTGCTCCGGACCCTGATATATTAATTCGTACTTCTGGGGAGACCCGCTTGAGCAACTTTCTTCTGTGGCAGAGTGCATACTGTTGTTTGTACTCTCCCTCCGTGCTCTGGCCTGAGATTGGATTTCGGCATTTTGTTTGGGCAATCTTGAACTTTCAGTGTAACAGCTTACATCTGGAAATAAAAAAGAAACAGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Prenyltransf

Protein Analysis

291

Amino Acids

33.34

Weight (kDa)

8.55

Isoelectric Point (pI)

47.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prenyltransf PF01255 40 - 279 6.7e-70 Putative undecaprenyl diphosphate synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 679
AciI CCGC 2 cut(s) 151, 718
AcsI RAATTY 2 cut(s) 33, 596
AcuI CTGAAG 1 cut(s) 306
AfaI GTAC 3 cut(s) 215, 703, 764
AfiI CCNNNNNNNGG 3 cut(s) 316, 780, 791
AflII CTTAAG 2 cut(s) 58, 371
AgsI TTSAA 7 cut(s) 274, 296, 329, 524, 565, 653, 823
AluBI AGCT 3 cut(s) 194, 578, 840
AluI AGCT 3 cut(s) 194, 578, 840
Alw21I GWGCWC 3 cut(s) 91, 381, 780
Alw26I GTCTC 1 cut(s) 707
Alw44I GTGCAC 1 cut(s) 377
Aor13HI TCCGGA 1 cut(s) 679
AoxI GGCC 1 cut(s) 782
ApaLI GTGCAC 1 cut(s) 377
ApeKI GCWGC 1 cut(s) 425
ApoI RAATTY 2 cut(s) 33, 596
AseI ATTAAT 1 cut(s) 695
Asp700I GAANNNNTTC 1 cut(s) 291
AspS9I GGNCC 2 cut(s) 307, 682
AvaII GGWCC 2 cut(s) 307, 682
BaeGI GKGCMC 1 cut(s) 381
Bbv12I GWGCWC 3 cut(s) 91, 381, 780
BbvI GCAGC 1 cut(s) 412
BccI CCATC 2 cut(s) 154, 298
BceAI ACGGC 1 cut(s) 503
BcoDI GTCTC 1 cut(s) 707
BfaI CTAG 3 cut(s) 462, 570, 590
BfmI CTRYAG 1 cut(s) 426
BfrI CTTAAG 2 cut(s) 58, 371
BisI GCNGC 1 cut(s) 426
BlsI GCNGC 1 cut(s) 427
BmcAI AGTACT 1 cut(s) 215
Bme18I GGWCC 2 cut(s) 307, 682
BmgT120I GGNCC 2 cut(s) 307, 682
BmiI GGNNCC 2 cut(s) 392, 684
BmsI GCATC 1 cut(s) 303
BpuEI CTTGAG 3 cut(s) 194, 424, 742
BsaI GGTCTC 1 cut(s) 707
BsaWI WCCGGW 1 cut(s) 679
BsaXI ACNNNNNCTCC 2 cut(s) 755, 785
Bsc4I CCNNNNNNNGG 3 cut(s) 316, 780, 791
Bse1I ACTGG 1 cut(s) 175
Bse3DI GCAATG 1 cut(s) 108
BseAI TCCGGA 1 cut(s) 679
BseGI GGATG 1 cut(s) 622
BseLI CCNNNNNNNGG 3 cut(s) 316, 780, 791
BseMI GCAATG 1 cut(s) 108
BseMII CTCAG 1 cut(s) 777
BseNI ACTGG 1 cut(s) 175
BseRI GAGGAG 1 cut(s) 480
BseSI GKGCMC 1 cut(s) 381
BseXI GCAGC 1 cut(s) 412
BseYI CCCAGC 1 cut(s) 578
BshFI GGCC 1 cut(s) 784
BsiHKAI GWGCWC 3 cut(s) 91, 381, 780
BsiSI CCGG 1 cut(s) 680
BslFI GGGAC 1 cut(s) 181
BslI CCNNNNNNNGG 3 cut(s) 316, 780, 791
BsmAI GTCTC 1 cut(s) 707
BsmFI GGGAC 1 cut(s) 181
BsmI GAATGC 1 cut(s) 571
BsnI GGCC 1 cut(s) 784
Bso31I GGTCTC 1 cut(s) 707
Bsp1286I GDGCHC 3 cut(s) 91, 381, 780
Bsp13I TCCGGA 1 cut(s) 679
BspACI CCGC 2 cut(s) 151, 718
BspANI GGCC 1 cut(s) 784
BspCNI CTCAG 1 cut(s) 778
BspEI TCCGGA 1 cut(s) 679
BspLI GGNNCC 2 cut(s) 392, 684
BspMAI CTGCAG 1 cut(s) 430
BspTI CTTAAG 2 cut(s) 58, 371
BspTNI GGTCTC 1 cut(s) 707
BsrDI GCAATG 1 cut(s) 108
BsrI ACTGG 1 cut(s) 175
Bst4CI ACNGT 3 cut(s) 218, 755, 867
Bst6I CTCTTC 2 cut(s) 282, 339
BstAFI CTTAAG 2 cut(s) 58, 371
BstC8I GCNNGC 1 cut(s) 516
BstDEI CTNAG 1 cut(s) 786
BstENI CCTNNNNNAGG 1 cut(s) 314
BstF5I GGATG 1 cut(s) 622
BstMAI GTCTC 1 cut(s) 707
BstMWI GCNNNNNNNGC 3 cut(s) 434, 443, 575
BstNSI RCATGY 1 cut(s) 518
BstSFI CTRYAG 1 cut(s) 426
BstSLI GKGCMC 1 cut(s) 381
BstV1I GCAGC 1 cut(s) 412
BsuRI GGCC 1 cut(s) 784
BtsCI GGATG 1 cut(s) 622
BtsI GCAGTG 1 cut(s) 19
BtsIMutI CAGTG 2 cut(s) 19, 836
Cac8I GCNNGC 1 cut(s) 516
Cfr13I GGNCC 2 cut(s) 307, 682
Csp6I GTAC 3 cut(s) 214, 702, 763
CviAII CATG 5 cut(s) 121, 199, 205, 515, 531
CviJI RGCY 6 cut(s) 194, 425, 437, 578, 784, 840
CviKI_1 RGCY 6 cut(s) 194, 425, 437, 578, 784, 840
CviQI GTAC 3 cut(s) 214, 702, 763
DdeI CTNAG 1 cut(s) 786
Eam1104I CTCTTC 2 cut(s) 282, 339
EarI CTCTTC 2 cut(s) 282, 339
Eco31I GGTCTC 1 cut(s) 707
Eco47I GGWCC 2 cut(s) 307, 682
Eco57I CTGAAG 1 cut(s) 306
EcoNI CCTNNNNNAGG 1 cut(s) 314
FaeI CATG 5 cut(s) 124, 202, 208, 518, 534
FalI AAGNNNNNCTT 2 cut(s) 365, 397
FaqI GGGAC 1 cut(s) 181
FatI CATG 5 cut(s) 120, 198, 204, 514, 530
FauI CCCGC 1 cut(s) 725
FauNDI CATATG 1 cut(s) 660
Fnu4HI GCNGC 1 cut(s) 426
FokI GGATG 1 cut(s) 629
Fsp4HI GCNGC 1 cut(s) 426
FspBI CTAG 3 cut(s) 462, 570, 590
GluI GCNGC 1 cut(s) 426
GsaI CCCAGC 1 cut(s) 582
HaeIII GGCC 1 cut(s) 784
HapII CCGG 1 cut(s) 680
Hin1II CATG 5 cut(s) 124, 202, 208, 518, 534
HinfI GANTC 1 cut(s) 527
HpaII CCGG 1 cut(s) 680
Hpy166II GTNNAC 1 cut(s) 379
Hpy188III TCNNGA 7 cut(s) 403, 462, 524, 590, 680, 820, 848
Hpy8I GTNNAC 1 cut(s) 379
HpyAV CCTTC 5 cut(s) 124, 129, 158, 323, 607
HpyCH4III ACNGT 3 cut(s) 218, 755, 867
HpyCH4V TGCA 6 cut(s) 316, 379, 428, 452, 514, 749
HpyF10VI GCNNNNNNNGC 3 cut(s) 434, 443, 575
HpyF3I CTNAG 1 cut(s) 786
Hsp92II CATG 5 cut(s) 124, 202, 208, 518, 534
Kpn2I TCCGGA 1 cut(s) 679
LmnI GCTCC 3 cut(s) 42, 575, 682
Lsp1109I GCAGC 1 cut(s) 412
LweI GCATC 1 cut(s) 303
MaeI CTAG 3 cut(s) 462, 570, 590
MaeIII GTNAC 2 cut(s) 241, 833
MboII GAAGA 4 cut(s) 299, 356, 548, 725
MhlI GDGCHC 3 cut(s) 91, 381, 780
MluCI AATT 7 cut(s) 33, 324, 336, 552, 596, 638, 696
MlyI GAGTC 1 cut(s) 536
MnlI CCTC 5 cut(s) 111, 283, 426, 458, 781
MroI TCCGGA 1 cut(s) 679
MroXI GAANNNNTTC 1 cut(s) 291
MseI TTAA 6 cut(s) 59, 335, 339, 357, 372, 695
MslI CAYNNNNRTG 1 cut(s) 203
MspCI CTTAAG 2 cut(s) 58, 371
MspI CCGG 1 cut(s) 680
Mva1269I GAATGC 1 cut(s) 571
MwoI GCNNNNNNNGC 3 cut(s) 434, 443, 575
NdeI CATATG 1 cut(s) 660
NlaIII CATG 5 cut(s) 124, 202, 208, 518, 534
NlaIV GGNNCC 2 cut(s) 392, 684
NspI RCATGY 1 cut(s) 518
PacI TTAATTAA 1 cut(s) 339
PaeI GCATGC 1 cut(s) 518
PctI GAATGC 1 cut(s) 571
PdmI GAANNNNTTC 1 cut(s) 291
PkrI GCNGC 1 cut(s) 427
PleI GAGTC 1 cut(s) 535
PpsI GAGTC 1 cut(s) 535
PshBI ATTAAT 1 cut(s) 695
PspFI CCCAGC 1 cut(s) 578
PspN4I GGNNCC 2 cut(s) 392, 684
PspPI GGNCC 2 cut(s) 307, 682
PstI CTGCAG 1 cut(s) 430
RsaI GTAC 3 cut(s) 215, 703, 764
RsaNI GTAC 3 cut(s) 214, 702, 763
RseI CAYNNNNRTG 1 cut(s) 203
SaqAI TTAA 6 cut(s) 59, 335, 339, 357, 372, 695
SatI GCNGC 1 cut(s) 426
Sau96I GGNCC 2 cut(s) 307, 682
ScaI AGTACT 1 cut(s) 215
SchI GAGTC 1 cut(s) 536
SduI GDGCHC 3 cut(s) 91, 381, 780
SfaNI GCATC 1 cut(s) 303
SfcI CTRYAG 1 cut(s) 426
SinI GGWCC 2 cut(s) 307, 682
SmiMI CAYNNNNRTG 1 cut(s) 203
SmlI CTYRAG 5 cut(s) 58, 209, 371, 403, 721
SmoI CTYRAG 5 cut(s) 58, 209, 371, 403, 721
SphI GCATGC 1 cut(s) 518
Sse9I AATT 7 cut(s) 33, 324, 336, 552, 596, 638, 696
SsiI CCGC 2 cut(s) 151, 718
SspMI CTAG 3 cut(s) 462, 570, 590
TaaI ACNGT 3 cut(s) 218, 755, 867
TasI AATT 7 cut(s) 33, 324, 336, 552, 596, 638, 696
TatI WGTACW 2 cut(s) 213, 762
Tru1I TTAA 6 cut(s) 59, 335, 339, 357, 372, 695
Tru9I TTAA 6 cut(s) 59, 335, 339, 357, 372, 695
TscAI CASTG 2 cut(s) 19, 836
TseI GCWGC 1 cut(s) 425
TspDTI ATGAA 3 cut(s) 106, 564, 633
TspGWI ACGGA 2 cut(s) 141, 763
TspRI CASTG 2 cut(s) 19, 836
Vha464I CTTAAG 2 cut(s) 58, 371
VneI GTGCAC 1 cut(s) 377
VpaK11BI GGWCC 2 cut(s) 307, 682
VspI ATTAAT 1 cut(s) 695
XagI CCTNNNNNAGG 1 cut(s) 314
XapI RAATTY 2 cut(s) 33, 596
XbaI TCTAGA 2 cut(s) 461, 589
XceI RCATGY 1 cut(s) 518
XmnI GAANNNNTTC 1 cut(s) 291
XspI CTAG 3 cut(s) 462, 570, 590
ZrmI AGTACT 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.