Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002374

Physical Location & Seq

Genomic Coordinates Forward (+)

19015060 .. 19016064

Gene Structure 1005 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1232700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGATGGAGGAAAACAGTGCCATTGTTGCAAGCCAAAGCAGTGCTATTGGTGCAAGCCAATCGTTGGGGGCTTTAGGATCTTTTCTGAGGAAATGCTTGTTCAGTGTGGTATCTGTGGGCCCCATTCCTGAACACATAGCCTTCATCATGGATGGGAACAGAAGGTATGCAAAGAGGAGGAACCTGCCTGCTGGGGAAGGCCACAGAGCCGGATTTCTATCTTTCATGTCGGTTCTCCAGTACTGCTACGAGTTGTTAGTGAAGTTTATGACGGTCTATGCCTTCGGCATTGATAATTTCAAGCGGCCATCCGACGAGGTGCAAATTCTGATGGATTTGTTGCAGGAGAAGATTGAGGGGTTGCTTGAGAGAGAAAGCATTGTAAACCAGTATGGCATTCGAGTATGCTTTATCGGTAACTTGAAGCTTTTGAATGAGTCTGTGAGGGATGCTGCTGAAAGGGCAATGAAGGCCACTGCCAATAATTCCAAGGCCGTGCTTTTAATCTGTGTGGCTTATTCTTCTCGTGATGAGATTGTGCATGCTGTTCAAGAATCCTGCTACGAGAAAAGGAACGAAATTCAAGCACAGATTAAAAGAACGAGGGGTGGCAATGGCGGTTTGGATGGAGAAGCAGGACTAGACACCAGTGAGGCTTGCAATGAGAGAGTTGAGGGGGAGAAGGAAAATACAATGGTTAATCATGTCGAAAATGTTGAAGGGGAAGTTCAAGAGAGTGAGAAGCAGTTGCAAAATGTTCCTGTTGTAAAGGTAGTGGACGTTGAGAGGCACATGTACATGGCAGTGGCACCTGATCCAAACATTGTGATTCGAACTTCGGGTGAGACACGCCTAAGCAACTTTCTGCTCTGGCAAACTTCTAACTGCCTGTTGTACTTTCCTGCTGCGCTATGGCCGGATTTGGGTTTGTGGCACTTGGTTTGGGCAATTTTGAACTTCCAGAGAAACCACTACTATTTGGAGAAGAAAAGGAAGCAGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002094 GO:0003674 GO:0003824 GO:0004659 GO:0006066 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016093 GO:0016094 GO:0016740 GO:0016765 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046165 GO:0071704 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00900 ko01110 map00900 map01110

Pfam Domains

Protein Families

Prenyltransf

Protein Analysis

335

Amino Acids

37.67

Weight (kDa)

6.04

Isoelectric Point (pI)

49.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltransf	PF01255	49 - 324	4.8e-67	Putative undecaprenyl diphosphate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17570
fragaria_vesca	FvH4_1g10471 FvH4_1g10471 FvH4_1g10480 FvH4_2g21620 FvH4_7g34231
malus_domestica	MD02G1118000.v1.1 MD02G1118200.v1.1 MD05G1029700.v1.1 MD15G1232700.v1.1
prunus_persica	Prupe.1G067500_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.8G224900_v2.0.a1 Prupe.8G224900_v2.0.a1
pyrus_communis	pycom02g09160 pycom05g02100
rosa_chinensis	RchiOBHm_Chr2g0097351 RchiOBHm_Chr6g0288291
rosa_laevigata	RLG00000012417 RLG00000016719 RLG00000017370
rosa_multiflora	Rmu_sc0001038.1_g000003
rosa_roxburghii	Rroxscaffold_2G00144750 Rroxscaffold_7G00180240
rosa_rugosa	Rorug02G0065900 Rorug06G0195300
rosa_samantha	Rh2AG112700 Rh2AG174400 Rh2BG115400 Rh2BG182100 Rh2CG117500 Rh2DG116700 Rh2DG180900 Rh6AG306500 Rh6BG312100 Rh6CG320100 Rh6DG305400
rosa_wichuraiana	Rw2G008820 Rw6G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	192
AccB1I	GGYRCC	1 cut(s)	808
AccB7I	CCANNNNNTGG	1 cut(s)	64
AciI	CCGC	2 cut(s)	304, 618
AclWI	GGATC	2 cut(s)	85, 809
AcoI	YGGCCR	2 cut(s)	305, 914
AcsI	RAATTY	2 cut(s)	324, 579
AfaI	GTAC	3 cut(s)	242, 797, 896
AfiI	CCNNNNNNNGG	2 cut(s)	64, 923
AflIII	ACRYGT	1 cut(s)	792
AgsI	TTSAA	8 cut(s)	301, 424, 433, 551, 584, 719, 731, 955
AluBI	AGCT	1 cut(s)	427
AluI	AGCT	1 cut(s)	427
Alw26I	GTCTC	1 cut(s)	839
AlwI	GGATC	2 cut(s)	85, 809
AoxI	GGCC	6 cut(s)	118, 199, 305, 471, 492, 914
ApaI	GGGCCC	1 cut(s)	122
ApeKI	GCWGC	2 cut(s)	452, 905
ApoI	RAATTY	2 cut(s)	324, 579
AspLEI	GCGC	1 cut(s)	910
AspS9I	GGNCC	2 cut(s)	118, 119
AsuHPI	GGTGA	1 cut(s)	854
AsuII	TTCGAA	1 cut(s)	832
BaeGI	GKGCMC	1 cut(s)	122
BanI	GGYRCC	1 cut(s)	808
BanII	GRGCYC	1 cut(s)	122
BauI	CACGAG	1 cut(s)	525
BbvI	GCAGC	2 cut(s)	439, 892
BccI	CCATC	4 cut(s)	146, 316, 325, 620
BceAI	ACGGC	1 cut(s)	479
BcgI	CGANNNNNNTGC	2 cut(s)	42, 76
BcoDI	GTCTC	1 cut(s)	839
BfaI	CTAG	1 cut(s)	641
BfuAI	ACCTGC	1 cut(s)	192
BisI	GCNGC	3 cut(s)	305, 453, 906
BlsI	GCNGC	3 cut(s)	306, 454, 907
BmcAI	AGTACT	1 cut(s)	242
BmgT120I	GGNCC	2 cut(s)	118, 119
BmiI	GGNNCC	4 cut(s)	120, 121, 182, 810
BmsI	GCATC	1 cut(s)	439
BpmI	CTGGAG	1 cut(s)	221
Bpu10I	CCTNAGC	1 cut(s)	854
Bpu14I	TTCGAA	1 cut(s)	832
BpuEI	CTTGAG	1 cut(s)	386
BsaBI	GATNNNNATC	1 cut(s)	217
BsaJI	CCNNGG	1 cut(s)	489
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 923
Bse1I	ACTGG	3 cut(s)	238, 388, 648
Bse3DI	GCAATG	3 cut(s)	471, 619, 667
Bse8I	GATNNNNATC	1 cut(s)	217
BseDI	CCNNGG	1 cut(s)	489
BseGI	GGATG	4 cut(s)	157, 308, 454, 631
BseJI	GATNNNNATC	1 cut(s)	217
BseLI	CCNNNNNNNGG	2 cut(s)	64, 923
BseMI	GCAATG	3 cut(s)	471, 619, 667
BseMII	CTCAG	1 cut(s)	77
BseNI	ACTGG	3 cut(s)	238, 388, 648
BseRI	GAGGAG	1 cut(s)	190
BseSI	GKGCMC	1 cut(s)	122
BseXI	GCAGC	2 cut(s)	439, 892
BseYI	CCCAGC	1 cut(s)	191
BshFI	GGCC	6 cut(s)	120, 201, 307, 473, 494, 916
BshNI	GGYRCC	1 cut(s)	808
BsiSI	CCGG	2 cut(s)	210, 917
BslI	CCNNNNNNNGG	2 cut(s)	64, 923
BsmAI	GTCTC	1 cut(s)	839
BsmI	GAATGC	1 cut(s)	396
BsnI	GGCC	6 cut(s)	120, 201, 307, 473, 494, 916
Bsp119I	TTCGAA	1 cut(s)	832
Bsp120I	GGGCCC	1 cut(s)	118
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp1407I	TGTACA	1 cut(s)	795
Bsp143I	GATC	2 cut(s)	77, 814
BspACI	CCGC	2 cut(s)	304, 618
BspANI	GGCC	6 cut(s)	120, 201, 307, 473, 494, 916
BspCNI	CTCAG	1 cut(s)	78
BspLI	GGNNCC	4 cut(s)	120, 121, 182, 810
BspMI	ACCTGC	1 cut(s)	192
BspPI	GGATC	2 cut(s)	85, 809
BspT104I	TTCGAA	1 cut(s)	832
BspT107I	GGYRCC	1 cut(s)	808
BsrDI	GCAATG	3 cut(s)	471, 619, 667
BsrGI	TGTACA	1 cut(s)	795
BsrI	ACTGG	3 cut(s)	238, 388, 648
BssECI	CCNNGG	1 cut(s)	489
BssMI	GATC	2 cut(s)	77, 814
BssSI	CACGAG	1 cut(s)	525
BssT1I	CCWWGG	1 cut(s)	489
Bst2BI	CACGAG	1 cut(s)	525
Bst4CI	ACNGT	2 cut(s)	17, 274
BstAUI	TGTACA	1 cut(s)	795
BstBI	TTCGAA	1 cut(s)	832
BstC8I	GCNNGC	5 cut(s)	31, 55, 189, 543, 658
BstDEI	CTNAG	2 cut(s)	86, 854
BstF5I	GGATG	4 cut(s)	157, 308, 454, 631
BstHHI	GCGC	1 cut(s)	910
BstKTI	GATC	2 cut(s)	80, 817
BstMAI	GTCTC	1 cut(s)	839
BstMBI	GATC	2 cut(s)	77, 814
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 50, 461, 470
BstNSI	RCATGY	2 cut(s)	545, 796
BstSLI	GKGCMC	1 cut(s)	122
BstV1I	GCAGC	2 cut(s)	439, 892
BstX2I	RGATCY	1 cut(s)	77
BstYI	RGATCY	1 cut(s)	77
BsuRI	GGCC	6 cut(s)	120, 201, 307, 473, 494, 916
BtsCI	GGATG	4 cut(s)	157, 308, 454, 631
BtsI	GCAGTG	3 cut(s)	46, 474, 810
BtsIMutI	CAGTG	6 cut(s)	22, 46, 109, 474, 655, 810
BveI	ACCTGC	1 cut(s)	192
Cac8I	GCNNGC	5 cut(s)	31, 55, 189, 543, 658
CfoI	GCGC	1 cut(s)	910
Cfr13I	GGNCC	2 cut(s)	118, 119
Csp6I	GTAC	3 cut(s)	241, 796, 895
CviAII	CATG	6 cut(s)	148, 226, 542, 704, 793, 799
CviQI	GTAC	3 cut(s)	241, 796, 895
DdeI	CTNAG	2 cut(s)	86, 854
DpnI	GATC	2 cut(s)	79, 816
DpnII	GATC	2 cut(s)	77, 814
EaeI	YGGCCR	2 cut(s)	305, 914
Eco130I	CCWWGG	1 cut(s)	489
Eco24I	GRGCYC	1 cut(s)	122
EcoO109I	RGGNCCY	1 cut(s)	119
EcoT14I	CCWWGG	1 cut(s)	489
EcoT38I	GRGCYC	1 cut(s)	122
ErhI	CCWWGG	1 cut(s)	489
FaeI	CATG	6 cut(s)	151, 229, 545, 707, 796, 802
FatI	CATG	6 cut(s)	147, 225, 541, 703, 792, 798
Fnu4HI	GCNGC	3 cut(s)	305, 453, 906
FokI	GGATG	4 cut(s)	164, 295, 461, 638
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	3 cut(s)	305, 453, 906
FspBI	CTAG	1 cut(s)	641
GlaI	GCGC	1 cut(s)	909
GluI	GCNGC	3 cut(s)	305, 453, 906
GsaI	CCCAGC	1 cut(s)	195
GsuI	CTGGAG	1 cut(s)	221
HaeIII	GGCC	6 cut(s)	120, 201, 307, 473, 494, 916
HapII	CCGG	2 cut(s)	210, 917
HhaI	GCGC	1 cut(s)	910
Hin1II	CATG	6 cut(s)	151, 229, 545, 707, 796, 802
Hin6I	GCGC	1 cut(s)	908
HinP1I	GCGC	1 cut(s)	908
HindIII	AAGCTT	1 cut(s)	425
HinfI	GANTC	3 cut(s)	437, 554, 829
HpaII	CCGG	2 cut(s)	210, 917
HphI	GGTGA	1 cut(s)	854
Hpy166II	GTNNAC	2 cut(s)	385, 778
Hpy188I	TCNGA	3 cut(s)	87, 313, 330
Hpy188III	TCNNGA	5 cut(s)	128, 527, 551, 731, 961
Hpy8I	GTNNAC	2 cut(s)	385, 778
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	7 cut(s)	151, 156, 191, 292, 463, 676, 713
HpyCH4III	ACNGT	2 cut(s)	17, 274
HpyCH4IV	ACGT	1 cut(s)	780
HpyCH4V	TGCA	8 cut(s)	29, 53, 170, 322, 343, 541, 660, 751
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 50, 461, 470
HpyF3I	CTNAG	2 cut(s)	86, 854
HpySE526I	ACGT	1 cut(s)	780
Hsp92II	CATG	6 cut(s)	151, 229, 545, 707, 796, 802
HspAI	GCGC	1 cut(s)	908
Kzo9I	GATC	2 cut(s)	77, 814
Lsp1109I	GCAGC	2 cut(s)	439, 892
LweI	GCATC	1 cut(s)	439
MaeI	CTAG	1 cut(s)	641
MaeII	ACGT	1 cut(s)	780
MaeIII	GTNAC	1 cut(s)	416
MalI	GATC	2 cut(s)	79, 816
MboI	GATC	2 cut(s)	77, 814
MboII	GAAGA	3 cut(s)	361, 513, 997
MflI	RGATCY	1 cut(s)	77
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	5 cut(s)	295, 324, 484, 579, 948
MlyI	GAGTC	1 cut(s)	446
MmeI	TCCRAC	1 cut(s)	336
MseI	TTAA	3 cut(s)	503, 594, 699
MslI	CAYNNNNRTG	2 cut(s)	797, 803
MspI	CCGG	2 cut(s)	210, 917
Mva1269I	GAATGC	1 cut(s)	396
MwoI	GCNNNNNNNGC	4 cut(s)	26, 50, 461, 470
NdeII	GATC	2 cut(s)	77, 814
NlaIII	CATG	6 cut(s)	151, 229, 545, 707, 796, 802
NlaIV	GGNNCC	4 cut(s)	120, 121, 182, 810
NspI	RCATGY	2 cut(s)	545, 796
NspV	TTCGAA	1 cut(s)	832
PaeI	GCATGC	1 cut(s)	545
PciI	ACATGT	1 cut(s)	792
PctI	GAATGC	1 cut(s)	396
PfeI	GAWTC	2 cut(s)	554, 829
PflMI	CCANNNNNTGG	1 cut(s)	64
PkrI	GCNGC	3 cut(s)	306, 454, 907
PleI	GAGTC	1 cut(s)	445
PpsI	GAGTC	1 cut(s)	445
PscI	ACATGT	1 cut(s)	792
PspFI	CCCAGC	1 cut(s)	191
PspN4I	GGNNCC	4 cut(s)	120, 121, 182, 810
PspOMI	GGGCCC	1 cut(s)	118
PspPI	GGNCC	2 cut(s)	118, 119
PsuI	RGATCY	1 cut(s)	77
RsaI	GTAC	3 cut(s)	242, 797, 896
RsaNI	GTAC	3 cut(s)	241, 796, 895
RseI	CAYNNNNRTG	2 cut(s)	797, 803
SaqAI	TTAA	3 cut(s)	503, 594, 699
SatI	GCNGC	3 cut(s)	305, 453, 906
Sau3AI	GATC	2 cut(s)	77, 814
Sau96I	GGNCC	2 cut(s)	118, 119
ScaI	AGTACT	1 cut(s)	242
SchI	GAGTC	1 cut(s)	446
SduI	GDGCHC	1 cut(s)	122
SetI	ASST	7 cut(s)	167, 186, 321, 429, 774, 783, 814
SfaNI	GCATC	1 cut(s)	439
SfuI	TTCGAA	1 cut(s)	832
SmiMI	CAYNNNNRTG	2 cut(s)	797, 803
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
SphI	GCATGC	1 cut(s)	545
Sse9I	AATT	5 cut(s)	295, 324, 484, 579, 948
SsiI	CCGC	2 cut(s)	304, 618
SspMI	CTAG	1 cut(s)	641
StyI	CCWWGG	1 cut(s)	489
TaaI	ACNGT	2 cut(s)	17, 274
TaiI	ACGT	1 cut(s)	783
TaqI	TCGA	3 cut(s)	400, 708, 832
TasI	AATT	5 cut(s)	295, 324, 484, 579, 948
TatI	WGTACW	3 cut(s)	240, 795, 894
TauI	GCSGC	1 cut(s)	307
TfiI	GAWTC	2 cut(s)	554, 829
Tru1I	TTAA	3 cut(s)	503, 594, 699
Tru9I	TTAA	3 cut(s)	503, 594, 699
TscAI	CASTG	6 cut(s)	22, 46, 109, 481, 655, 810
TseI	GCWGC	2 cut(s)	452, 905
TspDTI	ATGAA	3 cut(s)	133, 214, 482
TspRI	CASTG	6 cut(s)	22, 46, 109, 481, 655, 810
Van91I	CCANNNNNTGG	1 cut(s)	64
XapI	RAATTY	2 cut(s)	324, 579
XceI	RCATGY	2 cut(s)	545, 796
XspI	CTAG	1 cut(s)	641
ZrmI	AGTACT	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.