Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002374

Physical Location & Seq

Genomic Coordinates Forward (+)

10347930 .. 10350379

Gene Structure 2450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG117500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGCGGTCGCGAATTCTGGTCTATCAGATTGTAAAGGGTCATCTTGGATTTAGTTGGTTAGCTTCTGCTCTTGATCATACGATGGACGAACAAAGTCTTGTTGCTGCAAACCCAAGCCATGGGGGTTTCACTTCTTTTCTGAGGAAATGCTTGTTTAGTGTAATGTCTGTTGGCCCCATTCCTGCTCACATCGCTTTCATCATGGATGGGAACCGAAGGTATGCAAAGAGACGGAACTTACCAGTTGGGGAAGGCCACAAAGCTGGATACTGGTCTCTCATGTCCCTTATTAGGTACTGCTGGGAAATGGGAGTGAAGTATGTAACTGTCTATGCCTTCAGCATTGACAATTTCAAGAGACCGCCGGACGAGGTGCAAATTCTAATGGACCTTTTGCAGGAGAAGATTGAAGGCTTGCTTGACAAAAGGAATTATCTGAACCAAGCTGGTGTTAGGGTATGCTTCATTGGTAACTTGAAGCTTCTGAGCGAGCCTGTCAGGGTTGCTGCTGAAAATGCAATGAAGGCGACTGCCAATAACTCCAATGCTACGCTTTTGATCTGTGTGGCCTATACTTCGACTGATGAGATTGTCCACGCTGTGGAAGAATCCTGCAAGGAGAAAATGAATGAAATTCAAGTACCTAATGGAAGAAAGGTTAGCAATGGTGTGATTCATGGAGTCAAAGAGGGAGGGAAGGTTAATGGCGGTGTGACTGAGACTGATGTTCACAAATCCTGCAACAACAATTTCGATGGTGAATTAGGTACTGGTGCGGTGATCCAAAGAGTTGAAAAGGTGAAAAAGGAAAATGGAACAGTTAGTCATGTAGTTGCAAGCAATGGTCTTGTTGAAGAAGTTGAAGAGAGTAGGGAGCAGCAGCAGAAAATACCTCGAGTAAAGCAGGTTGATGTTGAGAAGCACATGTACATGGCAGTGGCACCTGATCCCGACATTCTGATCCGAACTTCTGGCGAGACCCGGTTGAGCAACTTCCTTCTTTGGCAAAGTAGTAACTGCCCATTGTACTCCCCGGCTGCGCTGTGGCCAGACCTGGGTTTATGGCAATTGGTTTGGGCAGTTCTGAACTTCCAGCGCAACCACTACTATTTGGAGAAGAAAAAGAAGCAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002094 GO:0003674 GO:0003824 GO:0004659 GO:0006066 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016093 GO:0016094 GO:0016740 GO:0016765 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046165 GO:0071704 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00900 ko01110 map00900 map01110

Pfam Domains

Protein Families

Prenyltransf

Protein Analysis

378

Amino Acids

42.39

Weight (kDa)

8.68

Isoelectric Point (pI)

44.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltransf	PF01255	67 - 211	1.6e-44	Putative undecaprenyl diphosphate synthase
Prenyltransf	PF01255	281 - 368	1.6e-22	Putative undecaprenyl diphosphate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17570
fragaria_vesca	FvH4_1g10471 FvH4_1g10471 FvH4_1g10480 FvH4_2g21620 FvH4_7g34231
malus_domestica	MD02G1118000.v1.1 MD02G1118200.v1.1 MD05G1029700.v1.1 MD15G1232700.v1.1
prunus_persica	Prupe.1G067500_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.8G224900_v2.0.a1 Prupe.8G224900_v2.0.a1
pyrus_communis	pycom02g09160 pycom05g02100
rosa_chinensis	RchiOBHm_Chr2g0097351 RchiOBHm_Chr6g0288291
rosa_laevigata	RLG00000012417 RLG00000016719 RLG00000017370
rosa_multiflora	Rmu_sc0001038.1_g000003
rosa_roxburghii	Rroxscaffold_2G00144750 Rroxscaffold_7G00180240
rosa_rugosa	Rorug02G0065900 Rorug06G0195300
rosa_samantha	Rh2AG112700 Rh2AG174400 Rh2BG115400 Rh2BG182100 Rh2CG117500 Rh2DG116700 Rh2DG180900 Rh6AG306500 Rh6BG312100 Rh6CG320100 Rh6DG305400
rosa_wichuraiana	Rw2G008820 Rw6G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	895
AccB1I	GGYRCC	1 cut(s)	940
AccB7I	CCANNNNNTGG	2 cut(s)	119, 601
AccII	CGCG	1 cut(s)	10
AciI	CCGC	4 cut(s)	4, 362, 708, 776
AclWI	GGATC	3 cut(s)	775, 941, 955
AcoI	YGGCCR	1 cut(s)	1046
AcsI	RAATTY	3 cut(s)	12, 378, 633
AcuI	CTGAAG	1 cut(s)	322
AdeI	CACNNNGTG	1 cut(s)	601
AfaI	GTAC	5 cut(s)	296, 642, 769, 929, 1028
AfiI	CCNNNNNNNGG	5 cut(s)	119, 291, 397, 601, 1055
AflIII	ACRYGT	1 cut(s)	924
AgsI	TTSAA	7 cut(s)	355, 410, 478, 638, 794, 854, 863
AjnI	CCWGG	1 cut(s)	1053
AluBI	AGCT	4 cut(s)	62, 263, 446, 481
AluI	AGCT	4 cut(s)	62, 263, 446, 481
Alw26I	GTCTC	5 cut(s)	223, 279, 352, 713, 971
AlwI	GGATC	3 cut(s)	775, 941, 955
Ama87I	CYCGRG	1 cut(s)	894
AoxI	GGCC	4 cut(s)	172, 253, 567, 1046
ApeKI	GCWGC	5 cut(s)	104, 506, 877, 880, 1037
ApoI	RAATTY	3 cut(s)	12, 378, 633
AspLEI	GCGC	2 cut(s)	1042, 1098
AspS9I	GGNCC	2 cut(s)	173, 388
AsuC2I	CCSGG	2 cut(s)	982, 1034
AsuHPI	GGTGA	3 cut(s)	770, 790, 811
AvaI	CYCGRG	1 cut(s)	894
AvaII	GGWCC	1 cut(s)	388
BalI	TGGCCA	1 cut(s)	1048
BanI	GGYRCC	1 cut(s)	940
BarI	GAAGNNNNNNTAC	2 cut(s)	911, 943
BbvI	GCAGC	5 cut(s)	91, 493, 889, 892, 1024
BccI	CCATC	3 cut(s)	76, 200, 749
BciT130I	CCWGG	1 cut(s)	1055
BciVI	GTATCC	1 cut(s)	260
BclI	TGATCA	1 cut(s)	73
BcnI	CCSGG	2 cut(s)	982, 1034
BcoDI	GTCTC	5 cut(s)	223, 279, 352, 713, 971
BfuAI	ACCTGC	1 cut(s)	895
BfuI	GTATCC	1 cut(s)	260
BisI	GCNGC	5 cut(s)	105, 507, 878, 881, 1038
BlsI	GCNGC	5 cut(s)	106, 508, 879, 882, 1039
Bme1390I	CCNGG	3 cut(s)	982, 1034, 1055
Bme18I	GGWCC	1 cut(s)	388
BmeT110I	CYCGRG	1 cut(s)	894
BmgT120I	GGNCC	2 cut(s)	173, 388
BmiI	GGNNCC	3 cut(s)	175, 212, 942
BmrFI	CCNGG	3 cut(s)	982, 1034, 1055
BpuMI	CCSGG	2 cut(s)	982, 1034
BsaI	GGTCTC	3 cut(s)	279, 352, 971
BsaJI	CCNNGG	3 cut(s)	118, 1032, 1054
BsaXI	ACNNNNNCTCC	2 cut(s)	684, 714
Bsc4I	CCNNNNNNNGG	5 cut(s)	119, 291, 397, 601, 1055
Bse1I	ACTGG	3 cut(s)	242, 275, 775
Bse3DI	GCAATG	3 cut(s)	525, 670, 847
BseBI	CCWGG	1 cut(s)	1055
BseDI	CCNNGG	3 cut(s)	118, 1032, 1054
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	5 cut(s)	119, 291, 397, 601, 1055
BseMI	GCAATG	3 cut(s)	525, 670, 847
BseMII	CTCAG	3 cut(s)	131, 476, 708
BseNI	ACTGG	3 cut(s)	242, 275, 775
BseXI	GCAGC	5 cut(s)	91, 493, 889, 892, 1024
BseYI	CCCAGC	1 cut(s)	300
Bsh1236I	CGCG	1 cut(s)	10
Bsh1285I	CGRYCG	1 cut(s)	8
BshFI	GGCC	4 cut(s)	174, 255, 569, 1048
BshNI	GGYRCC	1 cut(s)	940
BsiEI	CGRYCG	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	894
BsiSI	CCGG	3 cut(s)	365, 982, 1034
BslFI	GGGAC	1 cut(s)	268
BslI	CCNNNNNNNGG	5 cut(s)	119, 291, 397, 601, 1055
BsmAI	GTCTC	5 cut(s)	223, 279, 352, 713, 971
BsmBI	CGTCTC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	268
BsnI	GGCC	4 cut(s)	174, 255, 569, 1048
Bso31I	GGTCTC	3 cut(s)	279, 352, 971
BsoBI	CYCGRG	1 cut(s)	894
Bsp1407I	TGTACA	1 cut(s)	927
Bsp143I	GATC	5 cut(s)	73, 558, 780, 946, 960
Bsp19I	CCATGG	1 cut(s)	118
Bsp68I	TCGCGA	1 cut(s)	10
BspACI	CCGC	4 cut(s)	4, 362, 708, 776
BspANI	GGCC	4 cut(s)	174, 255, 569, 1048
BspCNI	CTCAG	3 cut(s)	132, 477, 709
BspFNI	CGCG	1 cut(s)	10
BspLI	GGNNCC	3 cut(s)	175, 212, 942
BspMI	ACCTGC	1 cut(s)	895
BspPI	GGATC	3 cut(s)	775, 941, 955
BspT107I	GGYRCC	1 cut(s)	940
BspTNI	GGTCTC	3 cut(s)	279, 352, 971
BsrDI	GCAATG	3 cut(s)	525, 670, 847
BsrGI	TGTACA	1 cut(s)	927
BsrI	ACTGG	3 cut(s)	242, 275, 775
BssECI	CCNNGG	3 cut(s)	118, 1032, 1054
BssMI	GATC	5 cut(s)	73, 558, 780, 946, 960
BssT1I	CCWWGG	1 cut(s)	118
Bst2UI	CCWGG	1 cut(s)	1055
Bst4CI	ACNGT	2 cut(s)	328, 820
Bst6I	CTCTTC	1 cut(s)	858
BstAUI	TGTACA	1 cut(s)	927
BstC8I	GCNNGC	4 cut(s)	416, 491, 838, 1131
BstDEI	CTNAG	3 cut(s)	140, 485, 717
BstDSI	CCRYGG	1 cut(s)	118
BstENI	CCTNNNNNAGG	1 cut(s)	395
BstF5I	GGATG	1 cut(s)	211
BstFNI	CGCG	1 cut(s)	10
BstHHI	GCGC	2 cut(s)	1042, 1098
BstKTI	GATC	5 cut(s)	76, 561, 783, 949, 963
BstMAI	GTCTC	5 cut(s)	223, 279, 352, 713, 971
BstMBI	GATC	5 cut(s)	73, 558, 780, 946, 960
BstMCI	CGRYCG	1 cut(s)	8
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 515, 524
BstNI	CCWGG	1 cut(s)	1055
BstNSI	RCATGY	1 cut(s)	928
BstSCI	CCNGG	3 cut(s)	980, 1032, 1053
BstUI	CGCG	1 cut(s)	10
BstV1I	GCAGC	5 cut(s)	91, 493, 889, 892, 1024
BstXI	CCANNNNNNTGG	1 cut(s)	263
BsuI	GTATCC	1 cut(s)	260
BsuRI	GGCC	4 cut(s)	174, 255, 569, 1048
BtgI	CCRYGG	1 cut(s)	118
BtgZI	GCGATG	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	211
BtsI	GCAGTG	1 cut(s)	942
BtsIMutI	CAGTG	1 cut(s)	942
BtuMI	TCGCGA	1 cut(s)	10
BveI	ACCTGC	1 cut(s)	895
Cac8I	GCNNGC	4 cut(s)	416, 491, 838, 1131
CfoI	GCGC	2 cut(s)	1042, 1098
Cfr13I	GGNCC	2 cut(s)	173, 388
Csp6I	GTAC	5 cut(s)	295, 641, 768, 928, 1027
CviAII	CATG	7 cut(s)	119, 202, 280, 677, 827, 925, 931
CviQI	GTAC	5 cut(s)	295, 641, 768, 928, 1027
DdeI	CTNAG	3 cut(s)	140, 485, 717
DpnI	GATC	5 cut(s)	75, 560, 782, 948, 962
DpnII	GATC	5 cut(s)	73, 558, 780, 946, 960
DraIII	CACNNNGTG	1 cut(s)	601
EaeI	YGGCCR	1 cut(s)	1046
Eam1104I	CTCTTC	1 cut(s)	858
EarI	CTCTTC	1 cut(s)	858
Eco130I	CCWWGG	1 cut(s)	118
Eco31I	GGTCTC	3 cut(s)	279, 352, 971
Eco47I	GGWCC	1 cut(s)	388
Eco57I	CTGAAG	1 cut(s)	322
Eco88I	CYCGRG	1 cut(s)	894
EcoNI	CCTNNNNNAGG	1 cut(s)	395
EcoRI	GAATTC	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	1053
EcoT14I	CCWWGG	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	118
Esp3I	CGTCTC	1 cut(s)	223
FaeI	CATG	7 cut(s)	122, 205, 283, 680, 830, 928, 934
FalI	AAGNNNNNCTT	2 cut(s)	402, 434
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	7 cut(s)	118, 201, 279, 676, 826, 924, 930
FbaI	TGATCA	1 cut(s)	73
Fnu4HI	GCNGC	5 cut(s)	105, 507, 878, 881, 1038
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	5 cut(s)	105, 507, 878, 881, 1038
GlaI	GCGC	2 cut(s)	1041, 1097
GluI	GCNGC	5 cut(s)	105, 507, 878, 881, 1038
GsaI	CCCAGC	1 cut(s)	304
HaeIII	GGCC	4 cut(s)	174, 255, 569, 1048
HapII	CCGG	3 cut(s)	365, 982, 1034
HhaI	GCGC	2 cut(s)	1042, 1098
Hin1II	CATG	7 cut(s)	122, 205, 283, 680, 830, 928, 934
Hin6I	GCGC	2 cut(s)	1040, 1096
HinP1I	GCGC	2 cut(s)	1040, 1096
HindIII	AAGCTT	1 cut(s)	479
HinfI	GANTC	3 cut(s)	608, 673, 681
HpaII	CCGG	3 cut(s)	365, 982, 1034
HphI	GGTGA	3 cut(s)	770, 790, 811
Hpy166II	GTNNAC	2 cut(s)	595, 730
Hpy188I	TCNGA	7 cut(s)	27, 141, 438, 486, 960, 965, 1086
Hpy188III	TCNNGA	4 cut(s)	9, 71, 355, 950
Hpy8I	GTNNAC	2 cut(s)	595, 730
HpyAV	CCTTC	7 cut(s)	210, 245, 346, 404, 517, 691, 1007
HpyCH4III	ACNGT	2 cut(s)	328, 820
HpyCH4V	TGCA	8 cut(s)	107, 224, 376, 397, 518, 615, 741, 836
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 515, 524
HpyF3I	CTNAG	3 cut(s)	140, 485, 717
Hsp92II	CATG	7 cut(s)	122, 205, 283, 680, 830, 928, 934
HspAI	GCGC	2 cut(s)	1040, 1096
Ksp22I	TGATCA	1 cut(s)	73
Kzo9I	GATC	5 cut(s)	73, 558, 780, 946, 960
LmnI	GCTCC	1 cut(s)	874
Lsp1109I	GCAGC	5 cut(s)	91, 493, 889, 892, 1024
MaeIII	GTNAC	4 cut(s)	322, 470, 712, 1013
MalI	GATC	5 cut(s)	75, 560, 782, 948, 962
MboI	GATC	5 cut(s)	73, 558, 780, 946, 960
MboII	GAAGA	6 cut(s)	415, 617, 663, 866, 875, 1129
MfeI	CAATTG	1 cut(s)	1067
MlsI	TGGCCA	1 cut(s)	1048
MluCI	AATT	8 cut(s)	12, 349, 378, 430, 633, 748, 761, 1067
MluNI	TGGCCA	1 cut(s)	1048
MlyI	GAGTC	1 cut(s)	690
MnlI	CCTC	5 cut(s)	135, 364, 682, 686, 903
Mox20I	TGGCCA	1 cut(s)	1048
MscI	TGGCCA	1 cut(s)	1048
MseI	TTAA	1 cut(s)	702
MslI	CAYNNNNRTG	2 cut(s)	929, 935
Msp20I	TGGCCA	1 cut(s)	1048
MspI	CCGG	3 cut(s)	365, 982, 1034
MspR9I	CCNGG	3 cut(s)	982, 1034, 1055
MunI	CAATTG	1 cut(s)	1067
MvaI	CCWGG	1 cut(s)	1055
MvnI	CGCG	1 cut(s)	10
MwoI	GCNNNNNNNGC	3 cut(s)	191, 515, 524
NciI	CCSGG	2 cut(s)	982, 1034
NcoI	CCATGG	1 cut(s)	118
NdeII	GATC	5 cut(s)	73, 558, 780, 946, 960
NlaIII	CATG	7 cut(s)	122, 205, 283, 680, 830, 928, 934
NlaIV	GGNNCC	3 cut(s)	175, 212, 942
NmuCI	GTSAC	1 cut(s)	712
NruI	TCGCGA	1 cut(s)	10
NspI	RCATGY	1 cut(s)	928
PaeR7I	CTCGAG	1 cut(s)	894
PciI	ACATGT	1 cut(s)	924
PfeI	GAWTC	2 cut(s)	608, 673
PflMI	CCANNNNNTGG	2 cut(s)	119, 601
PkrI	GCNGC	5 cut(s)	106, 508, 879, 882, 1039
PleI	GAGTC	1 cut(s)	689
PpsI	GAGTC	1 cut(s)	689
PscI	ACATGT	1 cut(s)	924
Psp6I	CCWGG	1 cut(s)	1053
PspFI	CCCAGC	1 cut(s)	300
PspGI	CCWGG	1 cut(s)	1053
PspN4I	GGNNCC	3 cut(s)	175, 212, 942
PspPI	GGNCC	2 cut(s)	173, 388
PspXI	VCTCGAGB	1 cut(s)	894
RruI	TCGCGA	1 cut(s)	10
RsaI	GTAC	5 cut(s)	296, 642, 769, 929, 1028
RsaNI	GTAC	5 cut(s)	295, 641, 768, 928, 1027
RseI	CAYNNNNRTG	2 cut(s)	929, 935
SaqAI	TTAA	1 cut(s)	702
SatI	GCNGC	5 cut(s)	105, 507, 878, 881, 1038
Sau3AI	GATC	5 cut(s)	73, 558, 780, 946, 960
Sau96I	GGNCC	2 cut(s)	173, 388
SchI	GAGTC	1 cut(s)	690
ScrFI	CCNGG	3 cut(s)	982, 1034, 1055
Sfr274I	CTCGAG	1 cut(s)	894
SinI	GGWCC	1 cut(s)	388
SlaI	CTCGAG	1 cut(s)	894
SmiMI	CAYNNNNRTG	2 cut(s)	929, 935
SmlI	CTYRAG	1 cut(s)	894
SmoI	CTYRAG	1 cut(s)	894
Sse9I	AATT	8 cut(s)	12, 349, 378, 430, 633, 748, 761, 1067
SsiI	CCGC	4 cut(s)	4, 362, 708, 776
StyD4I	CCNGG	3 cut(s)	980, 1032, 1053
StyI	CCWWGG	1 cut(s)	118
TaaI	ACNGT	2 cut(s)	328, 820
TaqI	TCGA	3 cut(s)	578, 753, 895
TasI	AATT	8 cut(s)	12, 349, 378, 430, 633, 748, 761, 1067
TatI	WGTACW	2 cut(s)	927, 1026
TfiI	GAWTC	2 cut(s)	608, 673
Tru1I	TTAA	1 cut(s)	702
Tru9I	TTAA	1 cut(s)	702
TscAI	CASTG	1 cut(s)	942
TseFI	GTSAC	1 cut(s)	712
TseI	GCWGC	5 cut(s)	104, 506, 877, 880, 1037
Tsp45I	GTSAC	1 cut(s)	712
TspDTI	ATGAA	6 cut(s)	187, 454, 536, 641, 645, 665
TspGWI	ACGGA	1 cut(s)	247
TspRI	CASTG	1 cut(s)	942
Van91I	CCANNNNNTGG	2 cut(s)	119, 601
VpaK11BI	GGWCC	1 cut(s)	388
XagI	CCTNNNNNAGG	1 cut(s)	395
XapI	RAATTY	3 cut(s)	12, 378, 633
XceI	RCATGY	1 cut(s)	928
XhoI	CTCGAG	1 cut(s)	894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.