FvH4_2g21620

Belongs to the UPP synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0002374
Physical Location & Seq
Reverse (-)
17942008 .. 17945708
3701 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g21620.t1

Sequence Viewer

Length: 873 bp
ATGGAGAATAGCGCTGGCAATAGAGCAAACCAGATGTTTTGGAGCATTGTTAGTTTTTTTAGGAGATGTCTTTTTCTTGTGATTTCTGCTCGTCCTATACCTCATCACATTGCCTTCATCATGGACGGAAATAGAAGGTACGCTAAAAAGCGGAAGTTGATGGAAGGGACTGGACATAGGGTTGGTTTCGTAGCTCTCATGTCCATGCTCAAGTACTGTTATGAGTTGGGTGTGAGATATGTAACAATATATGCTTTTAGTATCGATAACTTCAAAAGGCAACCTGAAGAAGTTCAATCCTTGATGGACCTGATGCAGGAAAAAATCGAAGGGTTAATTAAAGAAGAGAGCATAGTTAATCGCTATGGAGTTAAGGTGCACTTTATTGGGAACATAAAGCTCTTGAGTGAACCTGTCAGGCTGGCTGCAGAGAGGGCTATGGTGGCAACTTCAAATAACTCCAAAGGAGTGCTATCAATATGTGTTGCCTACACATCTACTGATGAGATTATGCATGCTGTTCAAGAGTCATGTGAAGAAAAATGGAATGAAATTAGTGTATTGAATGCTAGTGGAGCTGGGTATGATCTAGATAAATTTGGAGAGAATGAGAATGAGGGAAGAGAAAACATTGTACAATTGACAGATATTGAAAGGCATATGTATATGGCAGTTGCTCCTGACCCTGATATTTTAATTCGTACTTCTGGGGAGACCCGCTTGAGCAACTTTCTTCTGTGGCAGAGTGCATACTGTTGTTTGTACACTCCCTCTGTGCTATGGCCTGAGATTGGATTTCGGCATTTTGTTTGGGCAATCTTGAACTTTCAGTGTAACCGCTTATATCTGGAAAGAAAAAAGAAACAGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Prenyltransf

Protein Analysis

291

Amino Acids

33.46

Weight (kDa)

8.1

Isoelectric Point (pI)

45.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prenyltransf PF01255 40 - 279 3.8e-70 Putative undecaprenyl diphosphate synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 151, 718, 838
AcsI RAATTY 1 cut(s) 596
AcuI CTGAAG 1 cut(s) 306
AfaI GTAC 5 cut(s) 140, 215, 636, 703, 764
AfeI AGCGCT 1 cut(s) 13
AfiI CCNNNNNNNGG 2 cut(s) 316, 791
AgsI TTSAA 7 cut(s) 274, 296, 453, 524, 565, 653, 823
AluBI AGCT 3 cut(s) 194, 400, 578
AluI AGCT 3 cut(s) 194, 400, 578
Alw21I GWGCWC 1 cut(s) 381
Alw26I GTCTC 1 cut(s) 707
Alw44I GTGCAC 1 cut(s) 377
Aor51HI AGCGCT 1 cut(s) 13
AoxI GGCC 1 cut(s) 782
ApaLI GTGCAC 1 cut(s) 377
ApeKI GCWGC 1 cut(s) 425
ApoI RAATTY 1 cut(s) 596
Asp700I GAANNNNTTC 1 cut(s) 291
AspLEI GCGC 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 307
AvaII GGWCC 1 cut(s) 307
BaeGI GKGCMC 1 cut(s) 381
Bbv12I GWGCWC 1 cut(s) 381
BbvI GCAGC 1 cut(s) 412
BccI CCATC 2 cut(s) 154, 298
BcoDI GTCTC 1 cut(s) 707
BfaI CTAG 2 cut(s) 570, 590
BfmI CTRYAG 1 cut(s) 426
BfoI RGCGCY 1 cut(s) 15
BisI GCNGC 1 cut(s) 426
BlsI GCNGC 1 cut(s) 427
BmcAI AGTACT 1 cut(s) 215
Bme18I GGWCC 1 cut(s) 307
BmgT120I GGNCC 1 cut(s) 307
BmsI GCATC 1 cut(s) 303
BpuEI CTTGAG 3 cut(s) 194, 424, 742
Bsa29I ATCGAT 1 cut(s) 264
BsaI GGTCTC 1 cut(s) 707
BsaXI ACNNNNNCTCC 2 cut(s) 360, 390
Bsc4I CCNNNNNNNGG 2 cut(s) 316, 791
Bse1I ACTGG 1 cut(s) 175
Bse3DI GCAATG 1 cut(s) 108
BseCI ATCGAT 1 cut(s) 264
BseLI CCNNNNNNNGG 2 cut(s) 316, 791
BseMI GCAATG 1 cut(s) 108
BseMII CTCAG 1 cut(s) 777
BseNI ACTGG 1 cut(s) 175
BseSI GKGCMC 1 cut(s) 381
BseXI GCAGC 1 cut(s) 412
BseYI CCCAGC 1 cut(s) 578
BshFI GGCC 1 cut(s) 784
BshVI ATCGAT 1 cut(s) 264
BsiHKAI GWGCWC 1 cut(s) 381
BslFI GGGAC 1 cut(s) 181
BslI CCNNNNNNNGG 2 cut(s) 316, 791
BsmAI GTCTC 1 cut(s) 707
BsmFI GGGAC 1 cut(s) 181
BsmI GAATGC 1 cut(s) 571
BsnI GGCC 1 cut(s) 784
Bso31I GGTCTC 1 cut(s) 707
Bsp1286I GDGCHC 1 cut(s) 381
Bsp1407I TGTACA 2 cut(s) 634, 762
Bsp143I GATC 1 cut(s) 586
BspACI CCGC 3 cut(s) 151, 718, 838
BspANI GGCC 1 cut(s) 784
BspCNI CTCAG 1 cut(s) 778
BspDI ATCGAT 1 cut(s) 264
BspMAI CTGCAG 1 cut(s) 430
BspTNI GGTCTC 1 cut(s) 707
BsrDI GCAATG 1 cut(s) 108
BsrGI TGTACA 2 cut(s) 634, 762
BsrI ACTGG 1 cut(s) 175
BssMI GATC 1 cut(s) 586
Bst4CI ACNGT 3 cut(s) 218, 755, 867
Bst6I CTCTTC 2 cut(s) 339, 616
BstAUI TGTACA 2 cut(s) 634, 762
BstC8I GCNNGC 3 cut(s) 16, 423, 516
BstDEI CTNAG 1 cut(s) 786
BstENI CCTNNNNNAGG 1 cut(s) 314
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 1 cut(s) 589
BstMAI GTCTC 1 cut(s) 707
BstMBI GATC 1 cut(s) 586
BstMWI GCNNNNNNNGC 3 cut(s) 434, 443, 575
BstNSI RCATGY 1 cut(s) 518
BstSFI CTRYAG 1 cut(s) 426
BstSLI GKGCMC 1 cut(s) 381
BstV1I GCAGC 1 cut(s) 412
Bsu15I ATCGAT 1 cut(s) 264
BsuRI GGCC 1 cut(s) 784
BsuTUI ATCGAT 1 cut(s) 264
BtsIMutI CAGTG 1 cut(s) 836
Cac8I GCNNGC 3 cut(s) 16, 423, 516
CfoI GCGC 1 cut(s) 14
Cfr13I GGNCC 1 cut(s) 307
ClaI ATCGAT 1 cut(s) 264
Csp6I GTAC 5 cut(s) 139, 214, 635, 702, 763
CviAII CATG 5 cut(s) 121, 199, 205, 515, 531
CviJI RGCY 7 cut(s) 194, 400, 421, 425, 437, 578, 784
CviKI_1 RGCY 7 cut(s) 194, 400, 421, 425, 437, 578, 784
CviQI GTAC 5 cut(s) 139, 214, 635, 702, 763
DdeI CTNAG 1 cut(s) 786
DpnI GATC 1 cut(s) 588
DpnII GATC 1 cut(s) 586
Eam1104I CTCTTC 2 cut(s) 339, 616
EarI CTCTTC 2 cut(s) 339, 616
Eco31I GGTCTC 1 cut(s) 707
Eco47I GGWCC 1 cut(s) 307
Eco47III AGCGCT 1 cut(s) 13
Eco57I CTGAAG 1 cut(s) 306
EcoNI CCTNNNNNAGG 1 cut(s) 314
EcoT22I ATGCAT 1 cut(s) 516
FaeI CATG 5 cut(s) 124, 202, 208, 518, 534
FalI AAGNNNNNCTT 2 cut(s) 365, 397
FaqI GGGAC 1 cut(s) 181
FatI CATG 5 cut(s) 120, 198, 204, 514, 530
FauI CCCGC 1 cut(s) 725
FauNDI CATATG 1 cut(s) 660
Fnu4HI GCNGC 1 cut(s) 426
Fsp4HI GCNGC 1 cut(s) 426
FspBI CTAG 2 cut(s) 570, 590
GlaI GCGC 1 cut(s) 13
GluI GCNGC 1 cut(s) 426
GsaI CCCAGC 1 cut(s) 582
HaeII RGCGCY 1 cut(s) 15
HaeIII GGCC 1 cut(s) 784
HhaI GCGC 1 cut(s) 14
Hin1II CATG 5 cut(s) 124, 202, 208, 518, 534
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HinfI GANTC 1 cut(s) 527
Hpy166II GTNNAC 3 cut(s) 379, 410, 765
Hpy188III TCNNGA 6 cut(s) 403, 524, 590, 680, 820, 848
Hpy8I GTNNAC 3 cut(s) 379, 410, 765
HpyAV CCTTC 4 cut(s) 124, 129, 158, 323
HpyCH4III ACNGT 3 cut(s) 218, 755, 867
HpyCH4V TGCA 5 cut(s) 316, 379, 428, 514, 749
HpyF10VI GCNNNNNNNGC 3 cut(s) 434, 443, 575
HpyF3I CTNAG 1 cut(s) 786
Hsp92II CATG 5 cut(s) 124, 202, 208, 518, 534
HspAI GCGC 1 cut(s) 12
Kzo9I GATC 1 cut(s) 586
LmnI GCTCC 3 cut(s) 42, 575, 682
Lsp1109I GCAGC 1 cut(s) 412
LweI GCATC 1 cut(s) 303
MaeI CTAG 2 cut(s) 570, 590
MaeIII GTNAC 2 cut(s) 241, 833
MalI GATC 1 cut(s) 588
MboI GATC 1 cut(s) 586
MboII GAAGA 5 cut(s) 299, 356, 548, 633, 725
MfeI CAATTG 1 cut(s) 638
MhlI GDGCHC 1 cut(s) 381
MluCI AATT 5 cut(s) 336, 552, 596, 638, 696
MlyI GAGTC 1 cut(s) 536
MnlI CCTC 4 cut(s) 111, 426, 610, 781
Mph1103I ATGCAT 1 cut(s) 516
MroXI GAANNNNTTC 1 cut(s) 291
MseI TTAA 5 cut(s) 335, 339, 357, 372, 695
MslI CAYNNNNRTG 1 cut(s) 203
MunI CAATTG 1 cut(s) 638
Mva1269I GAATGC 1 cut(s) 571
MwoI GCNNNNNNNGC 3 cut(s) 434, 443, 575
NdeI CATATG 1 cut(s) 660
NdeII GATC 1 cut(s) 586
NlaIII CATG 5 cut(s) 124, 202, 208, 518, 534
NsiI ATGCAT 1 cut(s) 516
NspI RCATGY 1 cut(s) 518
PacI TTAATTAA 1 cut(s) 339
PaeI GCATGC 1 cut(s) 518
PctI GAATGC 1 cut(s) 571
PdmI GAANNNNTTC 1 cut(s) 291
PkrI GCNGC 1 cut(s) 427
PleI GAGTC 1 cut(s) 535
PpsI GAGTC 1 cut(s) 535
PspFI CCCAGC 1 cut(s) 578
PspPI GGNCC 1 cut(s) 307
PstI CTGCAG 1 cut(s) 430
RsaI GTAC 5 cut(s) 140, 215, 636, 703, 764
RsaNI GTAC 5 cut(s) 139, 214, 635, 702, 763
RseI CAYNNNNRTG 1 cut(s) 203
SaqAI TTAA 5 cut(s) 335, 339, 357, 372, 695
SatI GCNGC 1 cut(s) 426
Sau3AI GATC 1 cut(s) 586
Sau96I GGNCC 1 cut(s) 307
ScaI AGTACT 1 cut(s) 215
SchI GAGTC 1 cut(s) 536
SduI GDGCHC 1 cut(s) 381
SetI ASST 9 cut(s) 103, 140, 196, 286, 312, 378, 402, 415, 580
SfaNI GCATC 1 cut(s) 303
SfcI CTRYAG 1 cut(s) 426
SinI GGWCC 1 cut(s) 307
SmiMI CAYNNNNRTG 1 cut(s) 203
SmlI CTYRAG 3 cut(s) 209, 403, 721
SmoI CTYRAG 3 cut(s) 209, 403, 721
SphI GCATGC 1 cut(s) 518
Sse9I AATT 5 cut(s) 336, 552, 596, 638, 696
SsiI CCGC 3 cut(s) 151, 718, 838
SspMI CTAG 2 cut(s) 570, 590
TaaI ACNGT 3 cut(s) 218, 755, 867
TaqI TCGA 2 cut(s) 264, 327
TasI AATT 5 cut(s) 336, 552, 596, 638, 696
TatI WGTACW 3 cut(s) 213, 634, 762
Tru1I TTAA 5 cut(s) 335, 339, 357, 372, 695
Tru9I TTAA 5 cut(s) 335, 339, 357, 372, 695
TscAI CASTG 1 cut(s) 836
TseI GCWGC 1 cut(s) 425
TspDTI ATGAA 2 cut(s) 106, 564
TspGWI ACGGA 1 cut(s) 141
TspRI CASTG 1 cut(s) 836
VneI GTGCAC 1 cut(s) 377
VpaK11BI GGWCC 1 cut(s) 307
XagI CCTNNNNNAGG 1 cut(s) 314
XapI RAATTY 1 cut(s) 596
XbaI TCTAGA 1 cut(s) 589
XceI RCATGY 1 cut(s) 518
XmnI GAANNNNTTC 1 cut(s) 291
XspI CTAG 2 cut(s) 570, 590
ZrmI AGTACT 1 cut(s) 215
Zsp2I ATGCAT 1 cut(s) 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.