pycom05g02100

Belongs to the UPP synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0002374
Physical Location & Seq
Reverse (-)
2407080 .. 2407952
873 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g02100.1

Sequence Viewer

Length: 873 bp
ATGGAGAAAACCAGTGGCAATATAGCAACCCGCTTGTTTTGGAGCATAGTTAGTTTTTTGAGGAGATGTCTCTTTCTTGTAATATCTATTCGTCCCATACCACGTCACATTGCCTTCATCATGGATGGAAACAGAAGATTTGCTAAAAAGCGGAAGATGATGGATGGGGATGGACACAGGGATGGGTTTTTGGCTTTGATGTCCATGCTCAAGTATTGTTATGAGTTGGGTGTGACATATGTAACGGTATATGCATTTAGTATTGATAATTTCAAAAGGAATCCTGAAGAAGTTCAATCCTTGATGGACCTGATGCAGGAGAAGATCGAAGGGTTAATCAAAGAAGAAAGCATAGTGAATCAGTATGGAGTTAGGGTACATTTTATTGGGAACCTAAAGCTCTTGAGTGAACCTGTCAGGTCGGCAGCAGAGAGGGCTATGGCAGCCACGGCCAATAACTCCCGAGGAGTGCTGTCAATATGTATTGCCTACACTTCCACTGATGAGATTGTGCATGCTGTTCAAGAATCATGTGAAGAAAAACTGTACGAGATTAGCGCGATGAATGCAAGTGGAGCTGGGTATGGTCTAATTAAACTTGGAGGCAATGAAGAGGATGAAAGGGTGAAGATTGTAAAATTGACAGATATTGAAAAACATATGTATATGGCGGTTGCACCAGACCCTGATGTTTTGATCCGTACGTCAGGTGAGACCCGGTTGAGCAATTTTCTTTTGTGGCAGAGTGCATTCTGTGTTTTGTACTCTCCCTCGGTGCTCTGGCCTGAGATTGGTTTCCGTCATTTTGTTTGGGCGATCTTGAAATTTCAGTCCAACTATTTTTATCTTGAACGCAAAAGGAAACAGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Prenyltransf

Protein Analysis

291

Amino Acids

33.23

Weight (kDa)

8.69

Isoelectric Point (pI)

49.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prenyltransf PF01255 40 - 279 2.9e-70 Putative undecaprenyl diphosphate synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 560
AciI CCGC 3 cut(s) 31, 151, 671
AclWI GGATC 1 cut(s) 691
AcoI YGGCCR 1 cut(s) 450
AcsI RAATTY 1 cut(s) 824
AcuI CTGAAG 1 cut(s) 306
AfaI GTAC 4 cut(s) 378, 548, 703, 764
AfiI CCNNNNNNNGG 2 cut(s) 316, 791
AgsI TTSAA 6 cut(s) 274, 296, 524, 653, 823, 851
AjiI CACGTC 1 cut(s) 104
AluBI AGCT 2 cut(s) 400, 578
AluI AGCT 2 cut(s) 400, 578
Alw21I GWGCWC 1 cut(s) 780
Alw26I GTCTC 2 cut(s) 74, 707
AlwI GGATC 1 cut(s) 691
AlwNI CAGNNNCTG 1 cut(s) 686
Ama87I CYCGRG 1 cut(s) 462
AoxI GGCC 2 cut(s) 450, 782
ApeKI GCWGC 2 cut(s) 425, 443
ApoI RAATTY 1 cut(s) 824
Asp700I GAANNNNTTC 1 cut(s) 291
AspLEI GCGC 1 cut(s) 560
AspS9I GGNCC 1 cut(s) 307
AsuC2I CCSGG 1 cut(s) 718
AsuHPI GGTGA 2 cut(s) 637, 722
AvaI CYCGRG 1 cut(s) 462
AvaII GGWCC 1 cut(s) 307
Bbv12I GWGCWC 1 cut(s) 780
BbvI GCAGC 2 cut(s) 437, 455
BccI CCATC 6 cut(s) 119, 154, 158, 164, 176, 298
BceAI ACGGC 1 cut(s) 465
BcnI CCSGG 1 cut(s) 718
BcoDI GTCTC 2 cut(s) 74, 707
BisI GCNGC 2 cut(s) 426, 444
BlsI GCNGC 2 cut(s) 427, 445
Bme1390I CCNGG 1 cut(s) 718
Bme18I GGWCC 1 cut(s) 307
BmeT110I CYCGRG 1 cut(s) 462
BmgBI CACGTC 1 cut(s) 104
BmgT120I GGNCC 1 cut(s) 307
BmiI GGNNCC 1 cut(s) 392
BmrFI CCNGG 1 cut(s) 718
BmsI GCATC 1 cut(s) 303
BpuEI CTTGAG 2 cut(s) 194, 424
BpuMI CCSGG 1 cut(s) 718
BsaI GGTCTC 1 cut(s) 707
BsaJI CCNNGG 3 cut(s) 447, 463, 771
BsaXI ACNNNNNCTCC 2 cut(s) 360, 390
Bsc4I CCNNNNNNNGG 2 cut(s) 316, 791
Bse1I ACTGG 1 cut(s) 12
Bse3DI GCAATG 2 cut(s) 108, 613
BseDI CCNNGG 3 cut(s) 447, 463, 771
BseGI GGATG 5 cut(s) 130, 169, 175, 187, 622
BseLI CCNNNNNNNGG 2 cut(s) 316, 791
BseMI GCAATG 2 cut(s) 108, 613
BseMII CTCAG 1 cut(s) 777
BseNI ACTGG 1 cut(s) 12
BseRI GAGGAG 2 cut(s) 76, 480
BseXI GCAGC 2 cut(s) 437, 455
BseYI CCCAGC 1 cut(s) 578
Bsh1236I CGCG 1 cut(s) 560
BshFI GGCC 2 cut(s) 452, 784
BsiHKAI GWGCWC 1 cut(s) 780
BsiHKCI CYCGRG 1 cut(s) 462
BsiSI CCGG 1 cut(s) 718
BsiWI CGTACG 1 cut(s) 701
BslFI GGGAC 1 cut(s) 78
BslI CCNNNNNNNGG 2 cut(s) 316, 791
BsmAI GTCTC 2 cut(s) 74, 707
BsmFI GGGAC 1 cut(s) 78
BsmI GAATGC 2 cut(s) 571, 749
BsnI GGCC 2 cut(s) 452, 784
Bso31I GGTCTC 1 cut(s) 707
BsoBI CYCGRG 1 cut(s) 462
Bsp1286I GDGCHC 1 cut(s) 780
Bsp143I GATC 3 cut(s) 324, 696, 816
BspACI CCGC 3 cut(s) 31, 151, 671
BspANI GGCC 2 cut(s) 452, 784
BspCNI CTCAG 1 cut(s) 778
BspFNI CGCG 1 cut(s) 560
BspLI GGNNCC 1 cut(s) 392
BspPI GGATC 1 cut(s) 691
BspTNI GGTCTC 1 cut(s) 707
BsrDI GCAATG 2 cut(s) 108, 613
BsrI ACTGG 1 cut(s) 12
BssECI CCNNGG 3 cut(s) 447, 463, 771
BssMI GATC 3 cut(s) 324, 696, 816
Bst4CI ACNGT 3 cut(s) 247, 546, 867
Bst6I CTCTTC 1 cut(s) 606
BstC8I GCNNGC 1 cut(s) 516
BstDEI CTNAG 1 cut(s) 786
BstDSI CCRYGG 1 cut(s) 447
BstENI CCTNNNNNAGG 1 cut(s) 314
BstF5I GGATG 5 cut(s) 130, 169, 175, 187, 622
BstFNI CGCG 1 cut(s) 560
BstHHI GCGC 1 cut(s) 560
BstKTI GATC 3 cut(s) 327, 699, 819
BstMAI GTCTC 2 cut(s) 74, 707
BstMBI GATC 3 cut(s) 324, 696, 816
BstMWI GCNNNNNNNGC 5 cut(s) 434, 443, 449, 566, 575
BstNSI RCATGY 1 cut(s) 518
BstSCI CCNGG 1 cut(s) 716
BstUI CGCG 1 cut(s) 560
BstV1I GCAGC 2 cut(s) 437, 455
BsuRI GGCC 2 cut(s) 452, 784
BtgI CCRYGG 1 cut(s) 447
BtgZI GCGATG 1 cut(s) 575
BtrI CACGTC 1 cut(s) 104
BtsCI GGATG 5 cut(s) 130, 169, 175, 187, 622
BtsIMutI CAGTG 2 cut(s) 19, 498
Cac8I GCNNGC 1 cut(s) 516
CaiI CAGNNNCTG 1 cut(s) 686
CfoI GCGC 1 cut(s) 560
Cfr13I GGNCC 1 cut(s) 307
Csp6I GTAC 4 cut(s) 377, 547, 702, 763
CviAII CATG 4 cut(s) 121, 205, 515, 531
CviJI RGCY 7 cut(s) 194, 400, 437, 446, 452, 578, 784
CviKI_1 RGCY 7 cut(s) 194, 400, 437, 446, 452, 578, 784
CviQI GTAC 4 cut(s) 377, 547, 702, 763
DdeI CTNAG 1 cut(s) 786
DpnI GATC 3 cut(s) 326, 698, 818
DpnII GATC 3 cut(s) 324, 696, 816
EaeI YGGCCR 1 cut(s) 450
Eam1104I CTCTTC 1 cut(s) 606
EarI CTCTTC 1 cut(s) 606
Eco31I GGTCTC 1 cut(s) 707
Eco47I GGWCC 1 cut(s) 307
Eco57I CTGAAG 1 cut(s) 306
Eco88I CYCGRG 1 cut(s) 462
EcoNI CCTNNNNNAGG 1 cut(s) 314
EcoT22I ATGCAT 1 cut(s) 256
FaeI CATG 4 cut(s) 124, 208, 518, 534
FaqI GGGAC 1 cut(s) 78
FatI CATG 4 cut(s) 120, 204, 514, 530
FauI CCCGC 1 cut(s) 38
FauNDI CATATG 2 cut(s) 238, 660
Fnu4HI GCNGC 2 cut(s) 426, 444
FokI GGATG 5 cut(s) 137, 176, 182, 194, 629
Fsp4HI GCNGC 2 cut(s) 426, 444
GlaI GCGC 1 cut(s) 559
GluI GCNGC 2 cut(s) 426, 444
GsaI CCCAGC 1 cut(s) 582
HaeIII GGCC 2 cut(s) 452, 784
HapII CCGG 1 cut(s) 718
HhaI GCGC 1 cut(s) 560
Hin1II CATG 4 cut(s) 124, 208, 518, 534
Hin6I GCGC 1 cut(s) 558
HinP1I GCGC 1 cut(s) 558
HinfI GANTC 3 cut(s) 280, 358, 527
HpaII CCGG 1 cut(s) 718
HphI GGTGA 2 cut(s) 637, 722
Hpy166II GTNNAC 1 cut(s) 410
Hpy188III TCNNGA 6 cut(s) 284, 403, 462, 524, 820, 848
Hpy8I GTNNAC 1 cut(s) 410
HpyAV CCTTC 2 cut(s) 124, 323
HpyCH4III ACNGT 3 cut(s) 247, 546, 867
HpyCH4IV ACGT 2 cut(s) 103, 704
HpyCH4V TGCA 6 cut(s) 254, 316, 514, 569, 677, 749
HpyF10VI GCNNNNNNNGC 5 cut(s) 434, 443, 449, 566, 575
HpyF3I CTNAG 1 cut(s) 786
HpySE526I ACGT 2 cut(s) 103, 704
Hsp92II CATG 4 cut(s) 124, 208, 518, 534
HspAI GCGC 1 cut(s) 558
Kzo9I GATC 3 cut(s) 324, 696, 816
LmnI GCTCC 2 cut(s) 42, 575
Lsp1109I GCAGC 2 cut(s) 437, 455
LweI GCATC 1 cut(s) 303
MaeII ACGT 2 cut(s) 103, 704
MaeIII GTNAC 3 cut(s) 104, 232, 241
MalI GATC 3 cut(s) 326, 698, 818
MboI GATC 3 cut(s) 324, 696, 816
MboII GAAGA 8 cut(s) 147, 166, 299, 334, 356, 548, 623, 640
MhlI GDGCHC 1 cut(s) 780
MluCI AATT 5 cut(s) 268, 591, 638, 727, 824
MmeI TCCRAC 1 cut(s) 858
MnlI CCTC 6 cut(s) 54, 426, 458, 596, 607, 781
Mph1103I ATGCAT 1 cut(s) 256
MroXI GAANNNNTTC 1 cut(s) 291
MseI TTAA 2 cut(s) 335, 594
MslI CAYNNNNRTG 1 cut(s) 180
MspI CCGG 1 cut(s) 718
MspR9I CCNGG 1 cut(s) 718
Mva1269I GAATGC 2 cut(s) 571, 749
MvnI CGCG 1 cut(s) 560
MwoI GCNNNNNNNGC 5 cut(s) 434, 443, 449, 566, 575
NciI CCSGG 1 cut(s) 718
NdeI CATATG 2 cut(s) 238, 660
NdeII GATC 3 cut(s) 324, 696, 816
NlaIII CATG 4 cut(s) 124, 208, 518, 534
NlaIV GGNNCC 1 cut(s) 392
NmuCI GTSAC 2 cut(s) 104, 232
NsiI ATGCAT 1 cut(s) 256
NspI RCATGY 1 cut(s) 518
PaeI GCATGC 1 cut(s) 518
PctI GAATGC 2 cut(s) 571, 749
PdmI GAANNNNTTC 1 cut(s) 291
PfeI GAWTC 3 cut(s) 280, 358, 527
Pfl23II CGTACG 1 cut(s) 701
PkrI GCNGC 2 cut(s) 427, 445
PspFI CCCAGC 1 cut(s) 578
PspLI CGTACG 1 cut(s) 701
PspN4I GGNNCC 1 cut(s) 392
PspPI GGNCC 1 cut(s) 307
PstNI CAGNNNCTG 1 cut(s) 686
RsaI GTAC 4 cut(s) 378, 548, 703, 764
RsaNI GTAC 4 cut(s) 377, 547, 702, 763
RseI CAYNNNNRTG 1 cut(s) 180
SaqAI TTAA 2 cut(s) 335, 594
SatI GCNGC 2 cut(s) 426, 444
Sau3AI GATC 3 cut(s) 324, 696, 816
Sau96I GGNCC 1 cut(s) 307
ScrFI CCNGG 1 cut(s) 718
SduI GDGCHC 1 cut(s) 780
SetI ASST 9 cut(s) 106, 312, 396, 402, 415, 422, 580, 707, 712
SfaNI GCATC 1 cut(s) 303
SinI GGWCC 1 cut(s) 307
SmiMI CAYNNNNRTG 1 cut(s) 180
SmlI CTYRAG 2 cut(s) 209, 403
SmoI CTYRAG 2 cut(s) 209, 403
SphI GCATGC 1 cut(s) 518
Sse9I AATT 5 cut(s) 268, 591, 638, 727, 824
SsiI CCGC 3 cut(s) 31, 151, 671
StyD4I CCNGG 1 cut(s) 716
TaaI ACNGT 3 cut(s) 247, 546, 867
TaiI ACGT 2 cut(s) 106, 707
TaqI TCGA 1 cut(s) 327
TasI AATT 5 cut(s) 268, 591, 638, 727, 824
TatI WGTACW 1 cut(s) 762
TfiI GAWTC 3 cut(s) 280, 358, 527
Tru1I TTAA 2 cut(s) 335, 594
Tru9I TTAA 2 cut(s) 335, 594
TscAI CASTG 2 cut(s) 19, 505
TseFI GTSAC 2 cut(s) 104, 232
TseI GCWGC 2 cut(s) 425, 443
Tsp45I GTSAC 2 cut(s) 104, 232
TspDTI ATGAA 4 cut(s) 106, 578, 624, 633
TspGWI ACGGA 2 cut(s) 689, 788
TspRI CASTG 2 cut(s) 19, 505
VpaK11BI GGWCC 1 cut(s) 307
XagI CCTNNNNNAGG 1 cut(s) 314
XapI RAATTY 1 cut(s) 824
XceI RCATGY 1 cut(s) 518
XmnI GAANNNNTTC 1 cut(s) 291
Zsp2I ATGCAT 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.