Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002374

Physical Location & Seq

Genomic Coordinates Forward (+)

9609211 .. 9609864

Gene Structure 654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1118200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGATGGAGAAAAACAGTGTGATTAGTGAAAGCGAAAGCAGGGCAATTGCAAGCCAAAAGTTGGGGGGTTTAGGCACTTTTCTGAGGAAATGCTTGTTCAGTGTTGTCTCTGTGGGCCCCATTCCTGAACACATAGCCTTCATCATGGATGGAAACAGAAGGTATGCAAAGAGGAGGAACTTGCCTGTTGGGGAAGGCCACAGAGCTGGATTTCCATCTCTCATGTCGATTCTCCGGCGGCCCGACGAGGTGAAAACTCTGATGGATTTGTTGCGGGAGAAGATTGAAGGGTTGCTTGAGAAAGAAAGCATTGTAAACCAGTTTGGCAATCGGGTATACTTTATCGGTAACTTGAAGCTTTTGAACGAGTCTGTGAGGGTTGCTGCTGAGAAGGCAATGAAGGCCACTGCCAATAATTCAAAGGCTGTGCTTTTGATCTGTGTGGCTTATACTTCTTGTGATGAGATTATCCATGCTGTTGAAGAATCCTGCAATGTGAAAAAGAGCGAAATTCGAGCACAGATTAACGGAGCAAAGGGTGGCCGCAATGGCGGTATGGATGGAGAAGCGGGGTTAGATACTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002094 GO:0003674 GO:0003824 GO:0004659 GO:0006066 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016093 GO:0016094 GO:0016740 GO:0016765 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046165 GO:0071704 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00900 ko01110 map00900 map01110

Pfam Domains

Protein Families

Prenyltransf

Protein Analysis

196

Amino Acids

21.31

Weight (kDa)

9.08

Isoelectric Point (pI)

48.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltransf	PF01255	48 - 79	9.1e-07	Putative undecaprenyl diphosphate synthase
Prenyltransf	PF01255	79 - 167	5.5e-16	Putative undecaprenyl diphosphate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17570
fragaria_vesca	FvH4_1g10471 FvH4_1g10471 FvH4_1g10480 FvH4_2g21620 FvH4_7g34231
malus_domestica	MD02G1118000.v1.1 MD02G1118200.v1.1 MD05G1029700.v1.1 MD15G1232700.v1.1
prunus_persica	Prupe.1G067500_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.8G224900_v2.0.a1 Prupe.8G224900_v2.0.a1
pyrus_communis	pycom02g09160 pycom05g02100
rosa_chinensis	RchiOBHm_Chr2g0097351 RchiOBHm_Chr6g0288291
rosa_laevigata	RLG00000012417 RLG00000016719 RLG00000017370
rosa_multiflora	Rmu_sc0001038.1_g000003
rosa_roxburghii	Rroxscaffold_2G00144750 Rroxscaffold_7G00180240
rosa_rugosa	Rorug02G0065900 Rorug06G0195300
rosa_samantha	Rh2AG112700 Rh2AG174400 Rh2BG115400 Rh2BG182100 Rh2CG117500 Rh2DG116700 Rh2DG180900 Rh6AG306500 Rh6BG312100 Rh6CG320100 Rh6DG305400
rosa_wichuraiana	Rw2G008820 Rw6G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	61
AccI	GTMKAC	1 cut(s)	336
AciI	CCGC	5 cut(s)	238, 274, 544, 552, 569
AcoI	YGGCCR	1 cut(s)	541
AcsI	RAATTY	1 cut(s)	510
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	5 cut(s)	287, 355, 364, 420, 482
AluBI	AGCT	3 cut(s)	206, 358, 585
AluI	AGCT	3 cut(s)	206, 358, 585
Alw21I	GWGCWC	1 cut(s)	520
Alw26I	GTCTC	1 cut(s)	112
AoxI	GGCC	5 cut(s)	115, 196, 239, 402, 541
ApaI	GGGCCC	1 cut(s)	119
ApeKI	GCWGC	1 cut(s)	383
ApoI	RAATTY	1 cut(s)	510
AspS9I	GGNCC	3 cut(s)	115, 116, 240
AsuHPI	GGTGA	1 cut(s)	262
BaeGI	GKGCMC	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	119
Bbv12I	GWGCWC	1 cut(s)	520
BbvI	GCAGC	1 cut(s)	370
BccI	CCATC	4 cut(s)	143, 223, 256, 554
BcoDI	GTCTC	1 cut(s)	112
BfaI	CTAG	1 cut(s)	582
BglI	GCCNNNNNGGC	1 cut(s)	549
BisI	GCNGC	3 cut(s)	239, 384, 544
BlsI	GCNGC	3 cut(s)	240, 385, 545
BmgT120I	GGNCC	3 cut(s)	115, 116, 240
BmiI	GGNNCC	2 cut(s)	117, 118
BpuEI	CTTGAG	1 cut(s)	317
BsaBI	GATNNNNATC	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	319
Bse3DI	GCAATG	3 cut(s)	402, 499, 553
Bse8I	GATNNNNATC	1 cut(s)	214
BseGI	GGATG	2 cut(s)	154, 565
BseJI	GATNNNNATC	1 cut(s)	214
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMI	GCAATG	3 cut(s)	402, 499, 553
BseMII	CTCAG	2 cut(s)	74, 378
BseNI	ACTGG	1 cut(s)	319
BseRI	GAGGAG	1 cut(s)	187
BseSI	GKGCMC	1 cut(s)	119
BseXI	GCAGC	1 cut(s)	370
BshFI	GGCC	5 cut(s)	117, 198, 241, 404, 543
BsiHKAI	GWGCWC	1 cut(s)	520
BsiSI	CCGG	1 cut(s)	235
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	1 cut(s)	112
BsnI	GGCC	5 cut(s)	117, 198, 241, 404, 543
Bsp120I	GGGCCC	1 cut(s)	115
Bsp1286I	GDGCHC	2 cut(s)	119, 520
Bsp143I	GATC	1 cut(s)	435
BspACI	CCGC	5 cut(s)	238, 274, 544, 552, 569
BspANI	GGCC	5 cut(s)	117, 198, 241, 404, 543
BspCNI	CTCAG	2 cut(s)	75, 379
BspLI	GGNNCC	2 cut(s)	117, 118
BsrDI	GCAATG	3 cut(s)	402, 499, 553
BsrI	ACTGG	1 cut(s)	319
BssMI	GATC	1 cut(s)	435
BssNAI	GTATAC	1 cut(s)	337
Bst1107I	GTATAC	1 cut(s)	337
Bst4CI	ACNGT	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	2 cut(s)	83, 387
BstF5I	GGATG	2 cut(s)	154, 565
BstKTI	GATC	1 cut(s)	438
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	1 cut(s)	435
BstMWI	GCNNNNNNNGC	3 cut(s)	392, 401, 549
BstSLI	GKGCMC	1 cut(s)	119
BstV1I	GCAGC	1 cut(s)	370
BstXI	CCANNNNNNTGG	1 cut(s)	206
BstZ17I	GTATAC	1 cut(s)	337
BsuRI	GGCC	5 cut(s)	117, 198, 241, 404, 543
BtsCI	GGATG	2 cut(s)	154, 565
BtsI	GCAGTG	1 cut(s)	405
BtsIMutI	CAGTG	3 cut(s)	22, 106, 405
Cac8I	GCNNGC	1 cut(s)	52
Cfr13I	GGNCC	3 cut(s)	115, 116, 240
CviAII	CATG	3 cut(s)	145, 223, 473
DdeI	CTNAG	2 cut(s)	83, 387
DpnI	GATC	1 cut(s)	437
DpnII	GATC	1 cut(s)	435
EaeI	YGGCCR	1 cut(s)	541
Eco24I	GRGCYC	1 cut(s)	119
EcoO109I	RGGNCCY	1 cut(s)	116
EcoT38I	GRGCYC	1 cut(s)	119
FaeI	CATG	3 cut(s)	148, 226, 476
FaiI	YATR	8 cut(s)	134, 146, 165, 224, 337, 450, 474, 557
FalI	AAGNNNNNCTT	2 cut(s)	279, 311
FatI	CATG	3 cut(s)	144, 222, 472
FauI	CCCGC	2 cut(s)	267, 562
FblI	GTMKAC	1 cut(s)	336
Fnu4HI	GCNGC	3 cut(s)	239, 384, 544
FokI	GGATG	2 cut(s)	161, 572
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	3 cut(s)	239, 384, 544
FspBI	CTAG	1 cut(s)	582
GluI	GCNGC	3 cut(s)	239, 384, 544
HaeIII	GGCC	5 cut(s)	117, 198, 241, 404, 543
HapII	CCGG	1 cut(s)	235
Hin1II	CATG	3 cut(s)	148, 226, 476
HindIII	AAGCTT	1 cut(s)	356
HinfI	GANTC	3 cut(s)	229, 368, 485
HpaII	CCGG	1 cut(s)	235
HphI	GGTGA	1 cut(s)	262
Hpy166II	GTNNAC	2 cut(s)	316, 337
Hpy188I	TCNGA	2 cut(s)	84, 261
Hpy188III	TCNNGA	1 cut(s)	125
Hpy8I	GTNNAC	2 cut(s)	316, 337
Hpy99I	CGWCG	1 cut(s)	248
HpyAV	CCTTC	6 cut(s)	148, 153, 188, 281, 385, 394
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4V	TGCA	3 cut(s)	50, 167, 492
HpyF10VI	GCNNNNNNNGC	3 cut(s)	392, 401, 549
HpyF3I	CTNAG	2 cut(s)	83, 387
Hsp92II	CATG	3 cut(s)	148, 226, 476
Kzo9I	GATC	1 cut(s)	435
LmnI	GCTCC	1 cut(s)	530
LpnPI	CCDG	7 cut(s)	25, 138, 192, 198, 248, 332, 502
Lsp1109I	GCAGC	1 cut(s)	370
MaeI	CTAG	1 cut(s)	582
MaeIII	GTNAC	1 cut(s)	347
MalI	GATC	1 cut(s)	437
MboI	GATC	1 cut(s)	435
MboII	GAAGA	2 cut(s)	292, 494
MfeI	CAATTG	1 cut(s)	45
MhlI	GDGCHC	2 cut(s)	119, 520
MluCI	AATT	3 cut(s)	45, 415, 510
MlyI	GAGTC	1 cut(s)	377
MnlI	CCTC	5 cut(s)	78, 165, 168, 241, 369
MseI	TTAA	1 cut(s)	525
MspI	CCGG	1 cut(s)	235
MunI	CAATTG	1 cut(s)	45
MwoI	GCNNNNNNNGC	3 cut(s)	392, 401, 549
NdeII	GATC	1 cut(s)	435
NlaIII	CATG	3 cut(s)	148, 226, 476
NlaIV	GGNNCC	2 cut(s)	117, 118
PfeI	GAWTC	2 cut(s)	229, 485
PflMI	CCANNNNNTGG	1 cut(s)	61
PkrI	GCNGC	3 cut(s)	240, 385, 545
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
PspN4I	GGNNCC	2 cut(s)	117, 118
PspOMI	GGGCCC	1 cut(s)	115
PspPI	GGNCC	3 cut(s)	115, 116, 240
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	3 cut(s)	239, 384, 544
Sau3AI	GATC	1 cut(s)	435
Sau96I	GGNCC	3 cut(s)	115, 116, 240
SchI	GAGTC	1 cut(s)	377
SduI	GDGCHC	2 cut(s)	119, 520
SetI	ASST	5 cut(s)	164, 208, 252, 360, 587
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
Sse9I	AATT	3 cut(s)	45, 415, 510
SsiI	CCGC	5 cut(s)	238, 274, 544, 552, 569
SspMI	CTAG	1 cut(s)	582
TaaI	ACNGT	1 cut(s)	17
TaqI	TCGA	2 cut(s)	227, 514
TasI	AATT	3 cut(s)	45, 415, 510
TauI	GCSGC	2 cut(s)	241, 546
TfiI	GAWTC	2 cut(s)	229, 485
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TscAI	CASTG	3 cut(s)	22, 106, 412
TseI	GCWGC	1 cut(s)	383
TspDTI	ATGAA	2 cut(s)	130, 413
TspGWI	ACGGA	1 cut(s)	543
TspRI	CASTG	3 cut(s)	22, 106, 412
Van91I	CCANNNNNTGG	1 cut(s)	61
XapI	RAATTY	1 cut(s)	510
XmiI	GTMKAC	1 cut(s)	336
XspI	CTAG	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.