Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002374

Physical Location & Seq

Genomic Coordinates Forward (+)

5728661 .. 5731025

Gene Structure 2365 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g10471.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGACGAACAAAGTCGTGTTGCCACGAACCAAACTTATGAGGGTTTGGCTTCTTTTATGAGGAAATGCTTGTTCAGTGTTCTGTCTGTTGGCCCTATTCCTGCTCACATCGCCTTCATCATGGATGGGAACCGAAGGTATGCAAAGAGATGGAACTTAGCAGTTGGGGAAGGCCACAAAGCCGGATACTGGTGTGTCATGTCTCTTCTTAGGTACTGCTTGGAAATGGGAGTGAAGTACGTAACTTTCTATGCCTTCAGCATTGACAATTTCAAGAGACCCCCAGACGAGGTACAACTTCTAATGAACCTTTTGCAGGACAAGATTGAAGAAATGCTTGAGAAAAAAAGTTATGTGAACCAATTTGGTGTTAGAGTATGCTTCATTGGTAACTTGAAGCTTTTGAGCGAGCCTGTCAGGGTTGCAGCTGAAAAGGCAATGAAGGCGACTGTTAATAACTCCAAAGCTGTGTTGATAATCTGTTTGGCCTATACTTCAACTGATGAGATTGTCCACGCTGTAGAAGAATCCTGCAAGGAGAAAATGAATGAAGTTCAAGTACCTAATGGAAGAAAGGTTAGCAATGGTGTGATTCATCGAGTCAAAGAGGGAGGGAAGGTTAATGGTGTGACTGAGACTTATGCTCACATATCCTGCAACAACAATTTTGATGGAGAAGCAGCTCTAGGTACTAGTGCGCCTTCCAATGGTAATAGCAAAAGAGTTGAAAAGGTGAAAAGGGAAAATGGTACAGTTAATCATGCGGTTGCGAGTAGTGGTTTTGTTGAAGAGAGTGGGAAGCAGCAGCAGAAAATTCCTCAACTGAAGCTGGTTGATATTGAGAAGCACATGTACATGGCAGTGGCACCTGATCCTGACATTATGATCCGAAGTTCTGGCGAGACCAGGCTGAGCAATTTTCTTCTTTGGCAAACTACTAACTGCCCACTGTACTCTCCGGCTGCACTGTGGCCAGAACTGGGTTTATGGCAATTGGTTTGGGCAGTGCTGAACTTCCAGCGCGACCACTATTATATGGAGAAGAAAAAGAAGCAGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002094 GO:0003674 GO:0003824 GO:0004659 GO:0006066 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016093 GO:0016094 GO:0016740 GO:0016765 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046165 GO:0071704 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00900 ko01110 map00900 map01110

Pfam Domains

Protein Families

Prenyltransf

Protein Analysis

354

Amino Acids

39.81

Weight (kDa)

8.85

Isoelectric Point (pI)

46.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltransf	PF01255	59 - 202	2.6e-42	Putative undecaprenyl diphosphate synthase
Prenyltransf	PF01255	281 - 361	3.7e-20	Putative undecaprenyl diphosphate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17570
fragaria_vesca	FvH4_1g10471 FvH4_1g10471 FvH4_1g10480 FvH4_2g21620 FvH4_7g34231
malus_domestica	MD02G1118000.v1.1 MD02G1118200.v1.1 MD05G1029700.v1.1 MD15G1232700.v1.1
prunus_persica	Prupe.1G067500_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.8G224900_v2.0.a1 Prupe.8G224900_v2.0.a1
pyrus_communis	pycom02g09160 pycom05g02100
rosa_chinensis	RchiOBHm_Chr2g0097351 RchiOBHm_Chr6g0288291
rosa_laevigata	RLG00000012417 RLG00000016719 RLG00000017370
rosa_multiflora	Rmu_sc0001038.1_g000003
rosa_roxburghii	Rroxscaffold_2G00144750 Rroxscaffold_7G00180240
rosa_rugosa	Rorug02G0065900 Rorug06G0195300
rosa_samantha	Rh2AG112700 Rh2AG174400 Rh2BG115400 Rh2BG182100 Rh2CG117500 Rh2DG116700 Rh2DG180900 Rh6AG306500 Rh6BG312100 Rh6CG320100 Rh6DG305400
rosa_wichuraiana	Rw2G008820 Rw6G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1045
Acc36I	ACCTGC	1 cut(s)	1045
AccB1I	GGYRCC	1 cut(s)	865
AccII	CGCG	1 cut(s)	1023
AciI	CCGC	1 cut(s)	764
AclWI	GGATC	2 cut(s)	866, 880
AcoI	YGGCCR	1 cut(s)	971
AcsI	RAATTY	1 cut(s)	813
AcuI	CTGAAG	2 cut(s)	241, 845
AfaI	GTAC	8 cut(s)	215, 239, 294, 561, 691, 751, 854, 953
AfiI	CCNNNNNNNGG	5 cut(s)	189, 289, 316, 707, 980
AflIII	ACRYGT	1 cut(s)	849
AgsI	TTSAA	7 cut(s)	274, 329, 397, 498, 557, 728, 788
AhlI	ACTAGT	1 cut(s)	692
AjnI	CCWGG	1 cut(s)	905
AluBI	AGCT	5 cut(s)	400, 428, 467, 683, 829
AluI	AGCT	5 cut(s)	400, 428, 467, 683, 829
Alw26I	GTCTC	4 cut(s)	207, 271, 629, 896
AlwI	GGATC	2 cut(s)	866, 880
AoxI	GGCC	4 cut(s)	91, 172, 486, 971
ApeKI	GCWGC	5 cut(s)	425, 680, 802, 805, 962
ApoI	RAATTY	1 cut(s)	813
AspLEI	GCGC	2 cut(s)	700, 1023
AspS9I	GGNCC	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	745
BaeI	ACNNNNGTAYC	2 cut(s)	178, 211
BalI	TGGCCA	1 cut(s)	973
BanI	GGYRCC	1 cut(s)	865
BarI	GAAGNNNNNNTAC	4 cut(s)	543, 575, 836, 868
BbvI	GCAGC	5 cut(s)	437, 692, 814, 817, 949
BccI	CCATC	3 cut(s)	119, 144, 665
BciT130I	CCWGG	1 cut(s)	907
BciVI	GTATCC	1 cut(s)	179
BcoDI	GTCTC	4 cut(s)	207, 271, 629, 896
BcuI	ACTAGT	1 cut(s)	692
BfaI	CTAG	2 cut(s)	686, 693
BfmI	CTRYAG	1 cut(s)	519
BfuAI	ACCTGC	1 cut(s)	1045
BfuI	GTATCC	1 cut(s)	179
BisI	GCNGC	5 cut(s)	426, 681, 803, 806, 963
BlpI	GCTNAGC	1 cut(s)	911
BlsI	GCNGC	5 cut(s)	427, 682, 804, 807, 964
Bme1390I	CCNGG	1 cut(s)	907
BmgT120I	GGNCC	1 cut(s)	92
BmiI	GGNNCC	2 cut(s)	131, 867
BmrFI	CCNGG	1 cut(s)	907
BmrI	ACTGGG	1 cut(s)	989
BmuI	ACTGGG	1 cut(s)	989
Bpu1102I	GCTNAGC	1 cut(s)	911
BpuEI	CTTGAG	1 cut(s)	359
BsaAI	YACGTR	1 cut(s)	241
BsaI	GGTCTC	2 cut(s)	271, 896
BsaXI	ACNNNNNCTCC	2 cut(s)	603, 633
Bsc4I	CCNNNNNNNGG	5 cut(s)	189, 289, 316, 707, 980
Bse1I	ACTGG	2 cut(s)	194, 984
Bse3DI	GCAATG	2 cut(s)	444, 589
BseBI	CCWGG	1 cut(s)	907
BseGI	GGATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	5 cut(s)	189, 289, 316, 707, 980
BseMI	GCAATG	2 cut(s)	444, 589
BseMII	CTCAG	2 cut(s)	624, 902
BseNI	ACTGG	2 cut(s)	194, 984
BseXI	GCAGC	5 cut(s)	437, 692, 814, 817, 949
BsgI	GTGCAG	1 cut(s)	948
Bsh1236I	CGCG	1 cut(s)	1023
BshFI	GGCC	4 cut(s)	93, 174, 488, 973
BshNI	GGYRCC	1 cut(s)	865
BsiSI	CCGG	2 cut(s)	183, 959
BslI	CCNNNNNNNGG	5 cut(s)	189, 289, 316, 707, 980
BsmAI	GTCTC	4 cut(s)	207, 271, 629, 896
BsnI	GGCC	4 cut(s)	93, 174, 488, 973
Bso31I	GGTCTC	2 cut(s)	271, 896
Bsp1407I	TGTACA	1 cut(s)	852
Bsp143I	GATC	2 cut(s)	871, 885
Bsp1720I	GCTNAGC	1 cut(s)	911
BspACI	CCGC	1 cut(s)	764
BspANI	GGCC	4 cut(s)	93, 174, 488, 973
BspCNI	CTCAG	2 cut(s)	625, 903
BspFNI	CGCG	1 cut(s)	1023
BspLI	GGNNCC	2 cut(s)	131, 867
BspMI	ACCTGC	1 cut(s)	1045
BspPI	GGATC	2 cut(s)	866, 880
BspT107I	GGYRCC	1 cut(s)	865
BspTNI	GGTCTC	2 cut(s)	271, 896
BsrDI	GCAATG	2 cut(s)	444, 589
BsrGI	TGTACA	1 cut(s)	852
BsrI	ACTGG	2 cut(s)	194, 984
BssMI	GATC	2 cut(s)	871, 885
Bst2UI	CCWGG	1 cut(s)	907
Bst4CI	ACNGT	4 cut(s)	451, 754, 951, 969
Bst6I	CTCTTC	2 cut(s)	210, 783
BstAUI	TGTACA	1 cut(s)	852
BstBAI	YACGTR	1 cut(s)	241
BstC8I	GCNNGC	1 cut(s)	410
BstDEI	CTNAG	4 cut(s)	157, 209, 633, 911
BstENI	CCTNNNNNAGG	1 cut(s)	314
BstF5I	GGATG	1 cut(s)	130
BstFNI	CGCG	1 cut(s)	1023
BstHHI	GCGC	2 cut(s)	700, 1023
BstKTI	GATC	2 cut(s)	874, 888
BstMAI	GTCTC	4 cut(s)	207, 271, 629, 896
BstMBI	GATC	2 cut(s)	871, 885
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 434, 443
BstNI	CCWGG	1 cut(s)	907
BstNSI	RCATGY	1 cut(s)	853
BstSCI	CCNGG	1 cut(s)	905
BstSFI	CTRYAG	1 cut(s)	519
BstSNI	TACGTA	1 cut(s)	241
BstUI	CGCG	1 cut(s)	1023
BstV1I	GCAGC	5 cut(s)	437, 692, 814, 817, 949
BsuI	GTATCC	1 cut(s)	179
BsuRI	GGCC	4 cut(s)	93, 174, 488, 973
BtgZI	GCGATG	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	130
BtsI	GCAGTG	2 cut(s)	867, 1011
BtsIMutI	CAGTG	5 cut(s)	82, 867, 947, 965, 1011
BveI	ACCTGC	1 cut(s)	1045
Cac8I	GCNNGC	1 cut(s)	410
CfoI	GCGC	2 cut(s)	700, 1023
Cfr13I	GGNCC	1 cut(s)	92
Csp6I	GTAC	8 cut(s)	214, 238, 293, 560, 690, 750, 853, 952
CviAII	CATG	5 cut(s)	121, 199, 761, 850, 856
CviQI	GTAC	8 cut(s)	214, 238, 293, 560, 690, 750, 853, 952
DdeI	CTNAG	4 cut(s)	157, 209, 633, 911
DpnI	GATC	2 cut(s)	873, 887
DpnII	GATC	2 cut(s)	871, 885
EaeI	YGGCCR	1 cut(s)	971
Eam1104I	CTCTTC	2 cut(s)	210, 783
EarI	CTCTTC	2 cut(s)	210, 783
Eco105I	TACGTA	1 cut(s)	241
Eco31I	GGTCTC	2 cut(s)	271, 896
Eco57I	CTGAAG	2 cut(s)	241, 845
EcoNI	CCTNNNNNAGG	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	905
FaeI	CATG	5 cut(s)	124, 202, 764, 853, 859
FalI	AAGNNNNNCTT	2 cut(s)	321, 353
FatI	CATG	5 cut(s)	120, 198, 760, 849, 855
Fnu4HI	GCNGC	5 cut(s)	426, 681, 803, 806, 963
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	5 cut(s)	426, 681, 803, 806, 963
FspBI	CTAG	2 cut(s)	686, 693
GlaI	GCGC	2 cut(s)	699, 1022
GluI	GCNGC	5 cut(s)	426, 681, 803, 806, 963
HaeIII	GGCC	4 cut(s)	93, 174, 488, 973
HapII	CCGG	2 cut(s)	183, 959
HhaI	GCGC	2 cut(s)	700, 1023
Hin1II	CATG	5 cut(s)	124, 202, 764, 853, 859
Hin6I	GCGC	2 cut(s)	698, 1021
HinP1I	GCGC	2 cut(s)	698, 1021
HindIII	AAGCTT	1 cut(s)	398
HinfI	GANTC	3 cut(s)	527, 592, 600
HpaII	CCGG	2 cut(s)	183, 959
HphI	GGTGA	1 cut(s)	745
Hpy166II	GTNNAC	2 cut(s)	358, 514
Hpy188I	TCNGA	1 cut(s)	890
Hpy188III	TCNNGA	2 cut(s)	274, 875
Hpy8I	GTNNAC	2 cut(s)	358, 514
HpyAV	CCTTC	7 cut(s)	124, 129, 164, 265, 436, 610, 711
HpyCH4III	ACNGT	4 cut(s)	451, 754, 951, 969
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	6 cut(s)	143, 316, 425, 534, 657, 965
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 434, 443
HpyF3I	CTNAG	4 cut(s)	157, 209, 633, 911
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	5 cut(s)	124, 202, 764, 853, 859
HspAI	GCGC	2 cut(s)	698, 1021
Kzo9I	GATC	2 cut(s)	871, 885
Lsp1109I	GCAGC	5 cut(s)	437, 692, 814, 817, 949
MaeI	CTAG	2 cut(s)	686, 693
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	3 cut(s)	241, 389, 628
MalI	GATC	2 cut(s)	873, 887
MboI	GATC	2 cut(s)	871, 885
MboII	GAAGA	7 cut(s)	197, 341, 536, 582, 800, 914, 1054
MfeI	CAATTG	1 cut(s)	992
MlsI	TGGCCA	1 cut(s)	973
MluCI	AATT	6 cut(s)	268, 362, 664, 813, 916, 992
MluNI	TGGCCA	1 cut(s)	973
MlyI	GAGTC	1 cut(s)	609
MnlI	CCTC	6 cut(s)	34, 54, 283, 601, 605, 828
Mox20I	TGGCCA	1 cut(s)	973
MscI	TGGCCA	1 cut(s)	973
MseI	TTAA	3 cut(s)	453, 621, 756
MslI	CAYNNNNRTG	2 cut(s)	854, 860
Msp20I	TGGCCA	1 cut(s)	973
MspA1I	CMGCKG	1 cut(s)	428
MspI	CCGG	2 cut(s)	183, 959
MspR9I	CCNGG	1 cut(s)	907
MunI	CAATTG	1 cut(s)	992
MvaI	CCWGG	1 cut(s)	907
MvnI	CGCG	1 cut(s)	1023
MwoI	GCNNNNNNNGC	3 cut(s)	110, 434, 443
NdeII	GATC	2 cut(s)	871, 885
NlaIII	CATG	5 cut(s)	124, 202, 764, 853, 859
NlaIV	GGNNCC	2 cut(s)	131, 867
NmuCI	GTSAC	1 cut(s)	628
NspI	RCATGY	1 cut(s)	853
PaqCI	CACCTGC	1 cut(s)	1045
PciI	ACATGT	1 cut(s)	849
PfeI	GAWTC	2 cut(s)	527, 592
PkrI	GCNGC	5 cut(s)	427, 682, 804, 807, 964
PleI	GAGTC	1 cut(s)	608
PpsI	GAGTC	1 cut(s)	608
Ppu21I	YACGTR	1 cut(s)	241
PscI	ACATGT	1 cut(s)	849
Psp6I	CCWGG	1 cut(s)	905
PspGI	CCWGG	1 cut(s)	905
PspN4I	GGNNCC	2 cut(s)	131, 867
PspPI	GGNCC	1 cut(s)	92
PvuII	CAGCTG	1 cut(s)	428
RsaI	GTAC	8 cut(s)	215, 239, 294, 561, 691, 751, 854, 953
RsaNI	GTAC	8 cut(s)	214, 238, 293, 560, 690, 750, 853, 952
RseI	CAYNNNNRTG	2 cut(s)	854, 860
SaqAI	TTAA	3 cut(s)	453, 621, 756
SatI	GCNGC	5 cut(s)	426, 681, 803, 806, 963
Sau3AI	GATC	2 cut(s)	871, 885
Sau96I	GGNCC	1 cut(s)	92
SchI	GAGTC	1 cut(s)	609
ScrFI	CCNGG	1 cut(s)	907
SfcI	CTRYAG	1 cut(s)	519
SmiMI	CAYNNNNRTG	2 cut(s)	854, 860
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
SnaBI	TACGTA	1 cut(s)	241
SpeI	ACTAGT	1 cut(s)	692
Sse9I	AATT	6 cut(s)	268, 362, 664, 813, 916, 992
SsiI	CCGC	1 cut(s)	764
SspMI	CTAG	2 cut(s)	686, 693
StyD4I	CCNGG	1 cut(s)	905
TaaI	ACNGT	4 cut(s)	451, 754, 951, 969
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	1 cut(s)	598
TasI	AATT	6 cut(s)	268, 362, 664, 813, 916, 992
TatI	WGTACW	2 cut(s)	852, 951
TfiI	GAWTC	2 cut(s)	527, 592
Tru1I	TTAA	3 cut(s)	453, 621, 756
Tru9I	TTAA	3 cut(s)	453, 621, 756
TscAI	CASTG	5 cut(s)	82, 867, 954, 972, 1011
TseFI	GTSAC	1 cut(s)	628
TseI	GCWGC	5 cut(s)	425, 680, 802, 805, 962
Tsp45I	GTSAC	1 cut(s)	628
TspDTI	ATGAA	7 cut(s)	106, 320, 373, 455, 560, 564, 584
TspRI	CASTG	5 cut(s)	82, 867, 954, 972, 1011
XagI	CCTNNNNNAGG	1 cut(s)	314
XapI	RAATTY	1 cut(s)	813
XceI	RCATGY	1 cut(s)	853
XspI	CTAG	2 cut(s)	686, 693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.