Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002374

Physical Location & Seq

Genomic Coordinates Forward (+)

5731730 .. 5733834

Gene Structure 2105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g10480.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGGGTCTCCGGTTCAGGTCTATCAGTTTGTAAAGGGCTGTGTTGGATTCAGTCGGTTAGATTCGCTTGATCATACTACAATGGATGAAAAAAGTTTTGTTGCTGCAGCAAACAAAACTTTTGGGAGATTGACTACTTTTCTGAGGAAATGCTTGTTTAGTGTTCTGTCTGTTGGCCCCATTCCTGCTCACATTGCCTTCATCATGGATGGAAACCGGCGGTATGCAAAGAGAAGGAACTTGCCGGTTGGGGAAGGCCACAAAGCCGGATACTGGGCTCTTATGTCCCTTCTTAGGTGCTGCTGGGAGATGGGAGTGAAGTATGTGACTGTCTATGCCTTCAGCATTGACAATTTCAAGAGATCACCAGAGGAGGTGCAAACTCTAATGGACCTTTTGCAGGAGAAGATTGAAGGCTTGCTTGACAAGGAAAGTTATCTGAACCAAGCTGGTGTCAGAGTATGCTTCATTGGTAACTTGAAGCTTCTGAGTGAGCCTGTCAGGGCTGCTGCTGAAAATGCAATGAAGGCGACTGCCAATAACTCCAAAGCTGTGCTTTCAATCTGTGTGGCCTATACTTCAACTGATGAGATTGTCCATGCTGTAGAAGAATCCTGCAAGGAGAAAATGGATGAAATTCAAGTACCTAATGGAAGAAAGGTAAATGGTGTGATTCATGGAGTCGAAGAGGGAAGGAAGGTTAATGGTGTGACTGAGACTGATGTTCACAAATCCTGCAACAACAATTTTGATGGAGCAGCAGGTACTAATGAAGCTTCCAATGGTAAGATTGAAAGAGTTGACAAGGTGAAAAAGGAAAATGGAACAGTTGATCATGAAGTTGCAAGCAATGGTCTTGTTGAAGAAGTTAAAGTGAATGGGAAGCAACAGCATGAATTTCCTCAAGTAAAGCTGGTTGATGTTGAGAAGCACATGTACATGGCAGTGGCACCTGATCCCGACATTATGATCCGAACTTCTGGCGAGACCCGGCTGAGTAATTTCCTTCTTTGGCAAACTAGTTGCTGCCCATTGGAAGCCCCGGCTGCGCTGTGGCCAGAACTGGGTTTATGGCATTTGGTTTGGGCAGTTCTAAACTTCCAACGCACCCACCACTATCTGGAGAAGAAAAAGAAGCAGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002094 GO:0003674 GO:0003824 GO:0004659 GO:0006066 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016093 GO:0016094 GO:0016740 GO:0016765 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046165 GO:0071704 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00900 ko01110 map00900 map01110

Pfam Domains

Protein Families

Prenyltransf

Protein Analysis

382

Amino Acids

42.56

Weight (kDa)

7.59

Isoelectric Point (pI)

39.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltransf	PF01255	68 - 211	2.9e-45	Putative undecaprenyl diphosphate synthase
Prenyltransf	PF01255	298 - 371	6e-20	Putative undecaprenyl diphosphate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17570
fragaria_vesca	FvH4_1g10471 FvH4_1g10471 FvH4_1g10480 FvH4_2g21620 FvH4_7g34231
malus_domestica	MD02G1118000.v1.1 MD02G1118200.v1.1 MD05G1029700.v1.1 MD15G1232700.v1.1
prunus_persica	Prupe.1G067500_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.7G181400_v2.0.a1 Prupe.8G224900_v2.0.a1 Prupe.8G224900_v2.0.a1
pyrus_communis	pycom02g09160 pycom05g02100
rosa_chinensis	RchiOBHm_Chr2g0097351 RchiOBHm_Chr6g0288291
rosa_laevigata	RLG00000012417 RLG00000016719 RLG00000017370
rosa_multiflora	Rmu_sc0001038.1_g000003
rosa_roxburghii	Rroxscaffold_2G00144750 Rroxscaffold_7G00180240
rosa_rugosa	Rorug02G0065900 Rorug06G0195300
rosa_samantha	Rh2AG112700 Rh2AG174400 Rh2BG115400 Rh2BG182100 Rh2CG117500 Rh2DG116700 Rh2DG180900 Rh6AG306500 Rh6BG312100 Rh6CG320100 Rh6DG305400
rosa_wichuraiana	Rw2G008820 Rw6G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1129
Acc36I	ACCTGC	2 cut(s)	752, 1129
AccB1I	GGYRCC	1 cut(s)	949
AccB7I	CCANNNNNTGG	1 cut(s)	1120
AciI	CCGC	1 cut(s)	220
AclWI	GGATC	2 cut(s)	950, 964
AcoI	YGGCCR	1 cut(s)	1055
AcsI	RAATTY	2 cut(s)	636, 896
AcuI	CTGAAG	1 cut(s)	325
AfaI	GTAC	3 cut(s)	645, 766, 938
AfiI	CCNNNNNNNGG	5 cut(s)	273, 294, 400, 1064, 1120
AflIII	ACRYGT	1 cut(s)	933
AgsI	TTSAA	8 cut(s)	358, 413, 481, 561, 582, 641, 794, 863
AhlI	ACTAGT	1 cut(s)	1019
AluBI	AGCT	5 cut(s)	449, 484, 551, 776, 913
AluI	AGCT	5 cut(s)	449, 484, 551, 776, 913
Alw26I	GTCTC	3 cut(s)	12, 710, 980
AlwI	GGATC	2 cut(s)	950, 964
AoxI	GGCC	4 cut(s)	175, 256, 570, 1055
ApeKI	GCWGC	8 cut(s)	104, 107, 300, 506, 509, 758, 1026, 1046
ApoI	RAATTY	2 cut(s)	636, 896
AspLEI	GCGC	1 cut(s)	1051
AspS9I	GGNCC	2 cut(s)	176, 391
AsuC2I	CCSGG	2 cut(s)	991, 1043
AsuHPI	GGTGA	2 cut(s)	357, 820
AvaII	GGWCC	1 cut(s)	391
BalI	TGGCCA	1 cut(s)	1057
BanI	GGYRCC	1 cut(s)	949
BanII	GRGCYC	1 cut(s)	280
BarI	GAAGNNNNNNTAC	2 cut(s)	920, 952
BbvI	GCAGC	8 cut(s)	91, 119, 287, 493, 496, 770, 1013, 1033
BccI	CCATC	3 cut(s)	203, 304, 746
BciVI	GTATCC	1 cut(s)	263
BclI	TGATCA	2 cut(s)	70, 832
BcnI	CCSGG	2 cut(s)	991, 1043
BcoDI	GTCTC	3 cut(s)	12, 710, 980
BcuI	ACTAGT	1 cut(s)	1019
BfaI	CTAG	1 cut(s)	1020
BfmI	CTRYAG	2 cut(s)	105, 603
BfuAI	ACCTGC	2 cut(s)	752, 1129
BfuI	GTATCC	1 cut(s)	263
BisI	GCNGC	8 cut(s)	105, 108, 301, 507, 510, 759, 1027, 1047
BlsI	GCNGC	8 cut(s)	106, 109, 302, 508, 511, 760, 1028, 1048
Bme1390I	CCNGG	2 cut(s)	991, 1043
Bme18I	GGWCC	1 cut(s)	391
BmgT120I	GGNCC	2 cut(s)	176, 391
BmiI	GGNNCC	2 cut(s)	178, 951
BmrFI	CCNGG	2 cut(s)	991, 1043
BmrI	ACTGGG	2 cut(s)	283, 1073
BmuI	ACTGGG	2 cut(s)	283, 1073
BpmI	CTGGAG	1 cut(s)	1142
BpuEI	CTTGAG	1 cut(s)	888
BpuMI	CCSGG	2 cut(s)	991, 1043
BsaI	GGTCTC	2 cut(s)	12, 980
BsaJI	CCNNGG	1 cut(s)	1041
BsaWI	WCCGGW	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	5 cut(s)	273, 294, 400, 1064, 1120
Bse118I	RCCGGY	2 cut(s)	216, 244
Bse1I	ACTGG	2 cut(s)	278, 1068
Bse3DI	GCAATG	3 cut(s)	192, 528, 856
BseDI	CCNNGG	1 cut(s)	1041
BseGI	GGATG	3 cut(s)	91, 214, 637
BseLI	CCNNNNNNNGG	5 cut(s)	273, 294, 400, 1064, 1120
BseMI	GCAATG	3 cut(s)	192, 528, 856
BseMII	CTCAG	4 cut(s)	134, 479, 705, 986
BseNI	ACTGG	2 cut(s)	278, 1068
BseRI	GAGGAG	1 cut(s)	386
BseXI	GCAGC	8 cut(s)	91, 119, 287, 493, 496, 770, 1013, 1033
BseYI	CCCAGC	1 cut(s)	303
BshFI	GGCC	4 cut(s)	177, 258, 572, 1057
BshNI	GGYRCC	1 cut(s)	949
BsiSI	CCGG	6 cut(s)	11, 217, 245, 267, 991, 1043
BslFI	GGGAC	1 cut(s)	271
BslI	CCNNNNNNNGG	5 cut(s)	273, 294, 400, 1064, 1120
BsmAI	GTCTC	3 cut(s)	12, 710, 980
BsmFI	GGGAC	1 cut(s)	271
BsnI	GGCC	4 cut(s)	177, 258, 572, 1057
Bso31I	GGTCTC	2 cut(s)	12, 980
Bsp1286I	GDGCHC	1 cut(s)	280
Bsp1407I	TGTACA	1 cut(s)	936
Bsp143I	GATC	5 cut(s)	70, 362, 832, 955, 969
BspACI	CCGC	1 cut(s)	220
BspANI	GGCC	4 cut(s)	177, 258, 572, 1057
BspCNI	CTCAG	4 cut(s)	135, 480, 706, 987
BspHI	TCATGA	1 cut(s)	835
BspLI	GGNNCC	2 cut(s)	178, 951
BspMAI	CTGCAG	1 cut(s)	109
BspMI	ACCTGC	2 cut(s)	752, 1129
BspPI	GGATC	2 cut(s)	950, 964
BspT107I	GGYRCC	1 cut(s)	949
BspTNI	GGTCTC	2 cut(s)	12, 980
BsrDI	GCAATG	3 cut(s)	192, 528, 856
BsrFI	RCCGGY	2 cut(s)	216, 244
BsrGI	TGTACA	1 cut(s)	936
BsrI	ACTGG	2 cut(s)	278, 1068
BssAI	RCCGGY	2 cut(s)	216, 244
BssECI	CCNNGG	1 cut(s)	1041
BssMI	GATC	5 cut(s)	70, 362, 832, 955, 969
Bst4CI	ACNGT	2 cut(s)	331, 829
Bst6I	CTCTTC	1 cut(s)	681
BstAUI	TGTACA	1 cut(s)	936
BstC8I	GCNNGC	2 cut(s)	419, 847
BstDEI	CTNAG	5 cut(s)	143, 293, 488, 714, 995
BstENI	CCTNNNNNAGG	1 cut(s)	398
BstF5I	GGATG	3 cut(s)	91, 214, 637
BstHHI	GCGC	1 cut(s)	1051
BstKTI	GATC	5 cut(s)	73, 365, 835, 958, 972
BstMAI	GTCTC	3 cut(s)	12, 710, 980
BstMBI	GATC	5 cut(s)	70, 362, 832, 955, 969
BstMWI	GCNNNNNNNGC	4 cut(s)	194, 518, 527, 1046
BstNSI	RCATGY	1 cut(s)	937
BstSCI	CCNGG	2 cut(s)	989, 1041
BstSFI	CTRYAG	2 cut(s)	105, 603
BstV1I	GCAGC	8 cut(s)	91, 119, 287, 493, 496, 770, 1013, 1033
BsuI	GTATCC	1 cut(s)	263
BsuRI	GGCC	4 cut(s)	177, 258, 572, 1057
BtsCI	GGATG	3 cut(s)	91, 214, 637
BtsI	GCAGTG	1 cut(s)	951
BtsIMutI	CAGTG	1 cut(s)	951
BveI	ACCTGC	2 cut(s)	752, 1129
Cac8I	GCNNGC	2 cut(s)	419, 847
CciI	TCATGA	1 cut(s)	835
CfoI	GCGC	1 cut(s)	1051
Cfr10I	RCCGGY	2 cut(s)	216, 244
Cfr13I	GGNCC	2 cut(s)	176, 391
Csp6I	GTAC	3 cut(s)	644, 765, 937
CspCI	CAANNNNNGTGG	2 cut(s)	549, 584
CviAII	CATG	7 cut(s)	205, 599, 677, 836, 893, 934, 940
CviQI	GTAC	3 cut(s)	644, 765, 937
DdeI	CTNAG	5 cut(s)	143, 293, 488, 714, 995
DpnI	GATC	5 cut(s)	72, 364, 834, 957, 971
DpnII	GATC	5 cut(s)	70, 362, 832, 955, 969
EaeI	YGGCCR	1 cut(s)	1055
Eam1104I	CTCTTC	1 cut(s)	681
EarI	CTCTTC	1 cut(s)	681
Eco24I	GRGCYC	1 cut(s)	280
Eco31I	GGTCTC	2 cut(s)	12, 980
Eco47I	GGWCC	1 cut(s)	391
Eco57I	CTGAAG	1 cut(s)	325
EcoNI	CCTNNNNNAGG	1 cut(s)	398
EcoT38I	GRGCYC	1 cut(s)	280
FaeI	CATG	7 cut(s)	208, 602, 680, 839, 896, 937, 943
FalI	AAGNNNNNCTT	4 cut(s)	405, 437, 540, 572
FaqI	GGGAC	1 cut(s)	271
FatI	CATG	7 cut(s)	204, 598, 676, 835, 892, 933, 939
FbaI	TGATCA	2 cut(s)	70, 832
Fnu4HI	GCNGC	8 cut(s)	105, 108, 301, 507, 510, 759, 1027, 1047
FokI	GGATG	3 cut(s)	98, 221, 644
FriOI	GRGCYC	1 cut(s)	280
Fsp4HI	GCNGC	8 cut(s)	105, 108, 301, 507, 510, 759, 1027, 1047
FspBI	CTAG	1 cut(s)	1020
GlaI	GCGC	1 cut(s)	1050
GluI	GCNGC	8 cut(s)	105, 108, 301, 507, 510, 759, 1027, 1047
GsaI	CCCAGC	1 cut(s)	307
GsuI	CTGGAG	1 cut(s)	1142
HaeIII	GGCC	4 cut(s)	177, 258, 572, 1057
HapII	CCGG	6 cut(s)	11, 217, 245, 267, 991, 1043
HhaI	GCGC	1 cut(s)	1051
Hin1II	CATG	7 cut(s)	208, 602, 680, 839, 896, 937, 943
Hin6I	GCGC	1 cut(s)	1049
HinP1I	GCGC	1 cut(s)	1049
HincII	GTYRAC	1 cut(s)	802
HindII	GTYRAC	1 cut(s)	802
HindIII	AAGCTT	2 cut(s)	482, 774
HinfI	GANTC	5 cut(s)	48, 62, 611, 673, 681
HpaII	CCGG	6 cut(s)	11, 217, 245, 267, 991, 1043
HphI	GGTGA	2 cut(s)	357, 820
Hpy166II	GTNNAC	2 cut(s)	727, 802
Hpy188I	TCNGA	5 cut(s)	144, 441, 458, 489, 974
Hpy188III	TCNNGA	4 cut(s)	358, 836, 959, 1121
Hpy8I	GTNNAC	2 cut(s)	727, 802
HpyCH4III	ACNGT	2 cut(s)	331, 829
HpyCH4V	TGCA	8 cut(s)	107, 227, 379, 400, 521, 618, 738, 845
HpyF10VI	GCNNNNNNNGC	4 cut(s)	194, 518, 527, 1046
HpyF3I	CTNAG	5 cut(s)	143, 293, 488, 714, 995
Hsp92II	CATG	7 cut(s)	208, 602, 680, 839, 896, 937, 943
HspAI	GCGC	1 cut(s)	1049
Ksp22I	TGATCA	2 cut(s)	70, 832
Kzo9I	GATC	5 cut(s)	70, 362, 832, 955, 969
LmnI	GCTCC	1 cut(s)	755
Lsp1109I	GCAGC	8 cut(s)	91, 119, 287, 493, 496, 770, 1013, 1033
MaeI	CTAG	1 cut(s)	1020
MaeIII	GTNAC	3 cut(s)	325, 473, 709
MalI	GATC	5 cut(s)	72, 364, 834, 957, 971
MboI	GATC	5 cut(s)	70, 362, 832, 955, 969
MboII	GAAGA	6 cut(s)	418, 620, 666, 698, 875, 1138
MhlI	GDGCHC	1 cut(s)	280
MlsI	TGGCCA	1 cut(s)	1057
MluCI	AATT	5 cut(s)	352, 636, 745, 896, 1000
MluNI	TGGCCA	1 cut(s)	1057
MlyI	GAGTC	1 cut(s)	690
MmeI	TCCRAC	2 cut(s)	25, 1126
MnlI	CCTC	5 cut(s)	138, 364, 367, 682, 912
Mox20I	TGGCCA	1 cut(s)	1057
MscI	TGGCCA	1 cut(s)	1057
MseI	TTAA	2 cut(s)	702, 870
MslI	CAYNNNNRTG	2 cut(s)	938, 944
Msp20I	TGGCCA	1 cut(s)	1057
MspI	CCGG	6 cut(s)	11, 217, 245, 267, 991, 1043
MspR9I	CCNGG	2 cut(s)	991, 1043
MwoI	GCNNNNNNNGC	4 cut(s)	194, 518, 527, 1046
NciI	CCSGG	2 cut(s)	991, 1043
NdeII	GATC	5 cut(s)	70, 362, 832, 955, 969
NlaIII	CATG	7 cut(s)	208, 602, 680, 839, 896, 937, 943
NlaIV	GGNNCC	2 cut(s)	178, 951
NmuCI	GTSAC	2 cut(s)	325, 709
NspI	RCATGY	1 cut(s)	937
PagI	TCATGA	1 cut(s)	835
PaqCI	CACCTGC	1 cut(s)	1129
PciI	ACATGT	1 cut(s)	933
PfeI	GAWTC	4 cut(s)	48, 62, 611, 673
PflMI	CCANNNNNTGG	1 cut(s)	1120
PkrI	GCNGC	8 cut(s)	106, 109, 302, 508, 511, 760, 1028, 1048
PleI	GAGTC	1 cut(s)	689
PpsI	GAGTC	1 cut(s)	689
PscI	ACATGT	1 cut(s)	933
PspFI	CCCAGC	1 cut(s)	303
PspN4I	GGNNCC	2 cut(s)	178, 951
PspPI	GGNCC	2 cut(s)	176, 391
PstI	CTGCAG	1 cut(s)	109
RsaI	GTAC	3 cut(s)	645, 766, 938
RsaNI	GTAC	3 cut(s)	644, 765, 937
RseI	CAYNNNNRTG	2 cut(s)	938, 944
SaqAI	TTAA	2 cut(s)	702, 870
SatI	GCNGC	8 cut(s)	105, 108, 301, 507, 510, 759, 1027, 1047
Sau3AI	GATC	5 cut(s)	70, 362, 832, 955, 969
Sau96I	GGNCC	2 cut(s)	176, 391
SchI	GAGTC	1 cut(s)	690
ScrFI	CCNGG	2 cut(s)	991, 1043
SduI	GDGCHC	1 cut(s)	280
SfcI	CTRYAG	2 cut(s)	105, 603
SinI	GGWCC	1 cut(s)	391
SmiMI	CAYNNNNRTG	2 cut(s)	938, 944
SmlI	CTYRAG	1 cut(s)	903
SmoI	CTYRAG	1 cut(s)	903
SpeI	ACTAGT	1 cut(s)	1019
Sse9I	AATT	5 cut(s)	352, 636, 745, 896, 1000
SsiI	CCGC	1 cut(s)	220
SspMI	CTAG	1 cut(s)	1020
StyD4I	CCNGG	2 cut(s)	989, 1041
TaaI	ACNGT	2 cut(s)	331, 829
TaqI	TCGA	1 cut(s)	684
TasI	AATT	5 cut(s)	352, 636, 745, 896, 1000
TatI	WGTACW	1 cut(s)	936
TfiI	GAWTC	4 cut(s)	48, 62, 611, 673
Tru1I	TTAA	2 cut(s)	702, 870
Tru9I	TTAA	2 cut(s)	702, 870
TscAI	CASTG	1 cut(s)	951
TseFI	GTSAC	2 cut(s)	325, 709
TseI	GCWGC	8 cut(s)	104, 107, 300, 506, 509, 758, 1026, 1046
Tsp45I	GTSAC	2 cut(s)	325, 709
TspDTI	ATGAA	9 cut(s)	102, 190, 457, 539, 648, 665, 786, 852, 909
TspRI	CASTG	1 cut(s)	951
Van91I	CCANNNNNTGG	1 cut(s)	1120
VpaK11BI	GGWCC	1 cut(s)	391
XagI	CCTNNNNNAGG	1 cut(s)	398
XapI	RAATTY	2 cut(s)	636, 896
XceI	RCATGY	1 cut(s)	937
XspI	CTAG	1 cut(s)	1020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.