MD05G1029700.v1.1

Belongs to the UPP synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0002374
Physical Location & Seq
Reverse (-)
4845303 .. 4848586
3284 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1029700.v1.1.491

Sequence Viewer

Length: 873 bp
ATGGAGAAAACCAGTGGCAATATAGCAACCCGCTTGTTTTGGAGCATAGTTAGTTTTTTGAGGAGATGTCTCTTTCTTGTAATATCTATTCGTCCCATACCACGTCACATTGCCTTCATCATGGATGGAAACAGAAGATATGCTAAAAAGCGGAAGATGATGGATGGGGATGGACACAGGGTTGGGTTTTTGGCTCTTATGTCCATGCTCAAGTATTGTTTTGAGTTGGGTGTGACATATGTAACGGTATATGCGTTTAGTATTGAGAATTTCAAAAGGAATCCTGAAGAAGTTCAATCCTTGATGGACCTGATGCAGGAGAAGATCGAAGGGTTAATCAAAGAAGAAAGCATAGTGAATCAGTATGGAGTTAGGGTACATTTTATTGGGAACCTAAAGCTCTTGAGTGAACCTGTCAGGTCGGCAGCGGAGAGGGCTATGGCAGCCACGGCCAATAACTCCCGAGGAGTGCTGTCAATATGTATTGCGTACACTTCCACTGATGAGATTGTGCATGCTGTTCAAGAATCGTGTGAAGAAAAACTGGACGAGATTAGCTCGATGAATGCAATTAAAGCTGGGTATGGTCTAACTAAACTTGGAGGCAATGAAGAGAATGAAAGGGAGAAGATTGTAAAATTGACAGATATTGAAAAACATATGTATATGGCGGTTGCACCAGACCCTGATGTTTTAATCCGTACTTCAGGTGAGACCCGGTTGAGCAATTTTCTTTTGTGGCAGAGTGCGTTCTGTTATTTGTACTCTCCCTCGGTGCTCTGGCCTGAGATTGGTTTCCGTCATGTTGTTTGGGCGGTCTTGAAATTTCAGTCTAACTATTTTTATCTTGAACGCAAAAGGAAACAGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Prenyltransf

Protein Analysis

291

Amino Acids

33.31

Weight (kDa)

8.84

Isoelectric Point (pI)

52.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prenyltransf PF01255 40 - 279 7.1e-70 Putative undecaprenyl diphosphate synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 31, 151, 428, 671, 815
AcoI YGGCCR 1 cut(s) 450
AcsI RAATTY 2 cut(s) 268, 824
AcuI CTGAAG 2 cut(s) 306, 690
AfaI GTAC 4 cut(s) 378, 491, 703, 764
AfiI CCNNNNNNNGG 2 cut(s) 316, 791
AgsI TTSAA 6 cut(s) 274, 296, 524, 653, 823, 851
AjiI CACGTC 1 cut(s) 104
AluBI AGCT 3 cut(s) 400, 558, 578
AluI AGCT 3 cut(s) 400, 558, 578
Alw21I GWGCWC 1 cut(s) 780
Alw26I GTCTC 2 cut(s) 74, 707
AlwNI CAGNNNCTG 1 cut(s) 686
Ama87I CYCGRG 1 cut(s) 462
AoxI GGCC 2 cut(s) 450, 782
ApeKI GCWGC 2 cut(s) 425, 443
ApoI RAATTY 2 cut(s) 268, 824
Asp700I GAANNNNTTC 1 cut(s) 291
AspS9I GGNCC 1 cut(s) 307
AsuC2I CCSGG 1 cut(s) 718
AsuHPI GGTGA 1 cut(s) 722
AvaI CYCGRG 1 cut(s) 462
AvaII GGWCC 1 cut(s) 307
Bbv12I GWGCWC 1 cut(s) 780
BbvI GCAGC 2 cut(s) 437, 455
BccI CCATC 5 cut(s) 119, 154, 158, 164, 298
BceAI ACGGC 1 cut(s) 465
BcnI CCSGG 1 cut(s) 718
BcoDI GTCTC 2 cut(s) 74, 707
BisI GCNGC 2 cut(s) 426, 444
BlsI GCNGC 2 cut(s) 427, 445
Bme1390I CCNGG 1 cut(s) 718
Bme18I GGWCC 1 cut(s) 307
BmeT110I CYCGRG 1 cut(s) 462
BmgBI CACGTC 1 cut(s) 104
BmgT120I GGNCC 1 cut(s) 307
BmiI GGNNCC 1 cut(s) 392
BmrFI CCNGG 1 cut(s) 718
BmsI GCATC 1 cut(s) 303
BplI GAGNNNNNCTC 2 cut(s) 542, 574
BpuEI CTTGAG 2 cut(s) 194, 424
BpuMI CCSGG 1 cut(s) 718
BsaI GGTCTC 1 cut(s) 707
BsaJI CCNNGG 3 cut(s) 447, 463, 771
BsaXI ACNNNNNCTCC 2 cut(s) 360, 390
Bsc4I CCNNNNNNNGG 2 cut(s) 316, 791
Bse1I ACTGG 2 cut(s) 12, 549
Bse3DI GCAATG 2 cut(s) 108, 613
BseDI CCNNGG 3 cut(s) 447, 463, 771
BseGI GGATG 3 cut(s) 130, 169, 175
BseLI CCNNNNNNNGG 2 cut(s) 316, 791
BseMI GCAATG 2 cut(s) 108, 613
BseMII CTCAG 1 cut(s) 777
BseNI ACTGG 2 cut(s) 12, 549
BseRI GAGGAG 2 cut(s) 76, 480
BseXI GCAGC 2 cut(s) 437, 455
BseYI CCCAGC 1 cut(s) 578
BshFI GGCC 2 cut(s) 452, 784
BsiHKAI GWGCWC 1 cut(s) 780
BsiHKCI CYCGRG 1 cut(s) 462
BsiSI CCGG 1 cut(s) 718
BslFI GGGAC 1 cut(s) 78
BslI CCNNNNNNNGG 2 cut(s) 316, 791
BsmAI GTCTC 2 cut(s) 74, 707
BsmFI GGGAC 1 cut(s) 78
BsmI GAATGC 1 cut(s) 571
BsnI GGCC 2 cut(s) 452, 784
Bso31I GGTCTC 1 cut(s) 707
BsoBI CYCGRG 1 cut(s) 462
Bsp1286I GDGCHC 1 cut(s) 780
Bsp143I GATC 1 cut(s) 324
BspACI CCGC 5 cut(s) 31, 151, 428, 671, 815
BspANI GGCC 2 cut(s) 452, 784
BspCNI CTCAG 1 cut(s) 778
BspLI GGNNCC 1 cut(s) 392
BspTNI GGTCTC 1 cut(s) 707
BsrDI GCAATG 2 cut(s) 108, 613
BsrI ACTGG 2 cut(s) 12, 549
BssECI CCNNGG 3 cut(s) 447, 463, 771
BssMI GATC 1 cut(s) 324
Bst4CI ACNGT 2 cut(s) 247, 867
Bst6I CTCTTC 1 cut(s) 606
BstC8I GCNNGC 1 cut(s) 516
BstDEI CTNAG 1 cut(s) 786
BstDSI CCRYGG 1 cut(s) 447
BstENI CCTNNNNNAGG 1 cut(s) 314
BstF5I GGATG 3 cut(s) 130, 169, 175
BstKTI GATC 1 cut(s) 327
BstMAI GTCTC 2 cut(s) 74, 707
BstMBI GATC 1 cut(s) 324
BstMWI GCNNNNNNNGC 4 cut(s) 434, 443, 449, 575
BstNSI RCATGY 1 cut(s) 518
BstSCI CCNGG 1 cut(s) 716
BstV1I GCAGC 2 cut(s) 437, 455
BsuRI GGCC 2 cut(s) 452, 784
BtgI CCRYGG 1 cut(s) 447
BtrI CACGTC 1 cut(s) 104
BtsCI GGATG 3 cut(s) 130, 169, 175
BtsIMutI CAGTG 2 cut(s) 19, 498
Cac8I GCNNGC 1 cut(s) 516
CaiI CAGNNNCTG 1 cut(s) 686
Cfr13I GGNCC 1 cut(s) 307
Csp6I GTAC 4 cut(s) 377, 490, 702, 763
CviAII CATG 4 cut(s) 121, 205, 515, 803
CviJI RGCY 8 cut(s) 194, 400, 437, 446, 452, 558, 578, 784
CviKI_1 RGCY 8 cut(s) 194, 400, 437, 446, 452, 558, 578, 784
CviQI GTAC 4 cut(s) 377, 490, 702, 763
DdeI CTNAG 1 cut(s) 786
DpnI GATC 1 cut(s) 326
DpnII GATC 1 cut(s) 324
EaeI YGGCCR 1 cut(s) 450
Eam1104I CTCTTC 1 cut(s) 606
EarI CTCTTC 1 cut(s) 606
Eco31I GGTCTC 1 cut(s) 707
Eco47I GGWCC 1 cut(s) 307
Eco57I CTGAAG 2 cut(s) 306, 690
Eco88I CYCGRG 1 cut(s) 462
EcoNI CCTNNNNNAGG 1 cut(s) 314
FaeI CATG 4 cut(s) 124, 208, 518, 806
FaqI GGGAC 1 cut(s) 78
FatI CATG 4 cut(s) 120, 204, 514, 802
FauI CCCGC 1 cut(s) 38
FauNDI CATATG 2 cut(s) 238, 660
Fnu4HI GCNGC 2 cut(s) 426, 444
FokI GGATG 3 cut(s) 137, 176, 182
Fsp4HI GCNGC 2 cut(s) 426, 444
GluI GCNGC 2 cut(s) 426, 444
GsaI CCCAGC 1 cut(s) 582
HaeIII GGCC 2 cut(s) 452, 784
HapII CCGG 1 cut(s) 718
Hin1II CATG 4 cut(s) 124, 208, 518, 806
HinfI GANTC 3 cut(s) 280, 358, 527
HpaII CCGG 1 cut(s) 718
HphI GGTGA 1 cut(s) 722
Hpy166II GTNNAC 2 cut(s) 410, 492
Hpy188III TCNNGA 6 cut(s) 284, 403, 462, 524, 820, 848
Hpy8I GTNNAC 2 cut(s) 410, 492
HpyAV CCTTC 2 cut(s) 124, 323
HpyCH4III ACNGT 2 cut(s) 247, 867
HpyCH4IV ACGT 1 cut(s) 103
HpyCH4V TGCA 4 cut(s) 316, 514, 569, 677
HpyF10VI GCNNNNNNNGC 4 cut(s) 434, 443, 449, 575
HpyF3I CTNAG 1 cut(s) 786
HpySE526I ACGT 1 cut(s) 103
Hsp92II CATG 4 cut(s) 124, 208, 518, 806
Kzo9I GATC 1 cut(s) 324
LmnI GCTCC 1 cut(s) 42
Lsp1109I GCAGC 2 cut(s) 437, 455
LweI GCATC 1 cut(s) 303
MaeII ACGT 1 cut(s) 103
MaeIII GTNAC 3 cut(s) 104, 232, 241
MalI GATC 1 cut(s) 326
MboI GATC 1 cut(s) 324
MboII GAAGA 8 cut(s) 147, 166, 299, 334, 356, 548, 623, 640
MhlI GDGCHC 1 cut(s) 780
MluCI AATT 5 cut(s) 268, 570, 638, 727, 824
MnlI CCTC 5 cut(s) 54, 426, 458, 596, 781
MroXI GAANNNNTTC 1 cut(s) 291
MseI TTAA 3 cut(s) 335, 573, 695
MspA1I CMGCKG 1 cut(s) 428
MspI CCGG 1 cut(s) 718
MspR9I CCNGG 1 cut(s) 718
Mva1269I GAATGC 1 cut(s) 571
MwoI GCNNNNNNNGC 4 cut(s) 434, 443, 449, 575
NciI CCSGG 1 cut(s) 718
NdeI CATATG 2 cut(s) 238, 660
NdeII GATC 1 cut(s) 324
NlaIII CATG 4 cut(s) 124, 208, 518, 806
NlaIV GGNNCC 1 cut(s) 392
NmuCI GTSAC 2 cut(s) 104, 232
NspI RCATGY 1 cut(s) 518
PaeI GCATGC 1 cut(s) 518
PcsI WCGNNNNNNNCGW 1 cut(s) 251
PctI GAATGC 1 cut(s) 571
PdmI GAANNNNTTC 1 cut(s) 291
PfeI GAWTC 3 cut(s) 280, 358, 527
PkrI GCNGC 2 cut(s) 427, 445
PspFI CCCAGC 1 cut(s) 578
PspN4I GGNNCC 1 cut(s) 392
PspPI GGNCC 1 cut(s) 307
PstNI CAGNNNCTG 1 cut(s) 686
RsaI GTAC 4 cut(s) 378, 491, 703, 764
RsaNI GTAC 4 cut(s) 377, 490, 702, 763
SaqAI TTAA 3 cut(s) 335, 573, 695
SatI GCNGC 2 cut(s) 426, 444
Sau3AI GATC 1 cut(s) 324
Sau96I GGNCC 1 cut(s) 307
ScrFI CCNGG 1 cut(s) 718
SduI GDGCHC 1 cut(s) 780
SetI ASST 9 cut(s) 106, 312, 396, 402, 415, 422, 560, 580, 712
SfaNI GCATC 1 cut(s) 303
SinI GGWCC 1 cut(s) 307
SmlI CTYRAG 2 cut(s) 209, 403
SmoI CTYRAG 2 cut(s) 209, 403
SphI GCATGC 1 cut(s) 518
Sse9I AATT 5 cut(s) 268, 570, 638, 727, 824
SsiI CCGC 5 cut(s) 31, 151, 428, 671, 815
StyD4I CCNGG 1 cut(s) 716
TaaI ACNGT 2 cut(s) 247, 867
TaiI ACGT 1 cut(s) 106
TaqI TCGA 2 cut(s) 327, 560
TasI AATT 5 cut(s) 268, 570, 638, 727, 824
TatI WGTACW 1 cut(s) 762
TfiI GAWTC 3 cut(s) 280, 358, 527
Tru1I TTAA 3 cut(s) 335, 573, 695
Tru9I TTAA 3 cut(s) 335, 573, 695
TscAI CASTG 2 cut(s) 19, 505
TseFI GTSAC 2 cut(s) 104, 232
TseI GCWGC 2 cut(s) 425, 443
Tsp45I GTSAC 2 cut(s) 104, 232
TspDTI ATGAA 4 cut(s) 106, 578, 624, 633
TspGWI ACGGA 2 cut(s) 689, 788
TspRI CASTG 2 cut(s) 19, 505
VpaK11BI GGWCC 1 cut(s) 307
XagI CCTNNNNNAGG 1 cut(s) 314
XapI RAATTY 2 cut(s) 268, 824
XceI RCATGY 1 cut(s) 518
XmnI GAANNNNTTC 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.