Rh6BG312100

Belongs to the UPP synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0002374
Physical Location & Seq
Reverse (-)
54163956 .. 54164708
753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG312100.1

Sequence Viewer

Length: 753 bp
ATGGACGGAAATAGAAGGTATGCTAAAAAGCGGAAGTTGATGGAAGGGACTGGACATAGGGTTGGTTTTGTAGCTCTCATGTCCATGCTCAAGTACTGTTATGAGTTGGGTGTGAGATATGTAACAATATATGCTTTTAGTATTGAGAACTTCAAAAGGCAACCTGAAGAGGTTCAATCCTTGATGGACCTGATGCAGGAGAAAATCGAAGGGTTAATTAAAGAAGAGAGCATAGTTAATCGCTATGGAGTTAAGGTGCACTTTATTGGGAACCTAAAACTCTTGAGCGAACCTGTCAGGTTGGCTGCAGAGAGGGCTATGGTGGCAACTGCAAATAACTCTAGAGGAGTGCTATCAATATGTATTGCCTACACATCTACTGATGAGATTGTGCATGCCGTTCAAGAGTCATGTGAAGAAAAATGGAATGAAATTAGTGTATTGAATGCTAGTGGAGCTGGGTATGGTCTAGATAAATTTGGAGAGAATGAGAAGGATGAAAGGGAAAACATTGTAAAATTGACAGATATTGAAAGGCATATGTATATGGCAGTTGCTCCGGACCCTGATATATTAATTCGTACTTCTGGGGAGACCCGCTTGAGCAACTTTCTTCTGTGGCAGAGTGCATACTGTTGTTTGTACTCTCCCTCTGTGCTCTGGCCTGAGATTGGATTTCGGCATTTTGTTTGGGCAATCTTGAACTTTCAGTGTAACCGCTTATATCTGGAAAGAAAAAAGAAACAGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Prenyltransf

Protein Analysis

250

Amino Acids

28.81

Weight (kDa)

7.6

Isoelectric Point (pI)

45.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prenyltransf PF01255 1 - 239 7e-70 Putative undecaprenyl diphosphate synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 559
AciI CCGC 3 cut(s) 31, 598, 718
AcsI RAATTY 1 cut(s) 476
AcuI CTGAAG 1 cut(s) 186
AfaI GTAC 3 cut(s) 95, 583, 644
AfiI CCNNNNNNNGG 2 cut(s) 196, 671
AgsI TTSAA 6 cut(s) 154, 176, 404, 445, 533, 703
AluBI AGCT 2 cut(s) 74, 458
AluI AGCT 2 cut(s) 74, 458
Alw21I GWGCWC 2 cut(s) 261, 660
Alw26I GTCTC 1 cut(s) 587
Alw44I GTGCAC 1 cut(s) 257
Aor13HI TCCGGA 1 cut(s) 559
AoxI GGCC 1 cut(s) 662
ApaLI GTGCAC 1 cut(s) 257
ApeKI GCWGC 1 cut(s) 305
ApoI RAATTY 1 cut(s) 476
AseI ATTAAT 1 cut(s) 575
Asp700I GAANNNNTTC 1 cut(s) 171
AspS9I GGNCC 2 cut(s) 187, 562
AvaII GGWCC 2 cut(s) 187, 562
BaeGI GKGCMC 1 cut(s) 261
Bbv12I GWGCWC 2 cut(s) 261, 660
BbvI GCAGC 1 cut(s) 292
BccI CCATC 2 cut(s) 34, 178
BceAI ACGGC 1 cut(s) 383
BcoDI GTCTC 1 cut(s) 587
BfaI CTAG 3 cut(s) 342, 450, 470
BfmI CTRYAG 1 cut(s) 306
BisI GCNGC 1 cut(s) 306
BlsI GCNGC 1 cut(s) 307
BmcAI AGTACT 1 cut(s) 95
Bme18I GGWCC 2 cut(s) 187, 562
BmgT120I GGNCC 2 cut(s) 187, 562
BmiI GGNNCC 2 cut(s) 272, 564
BmsI GCATC 1 cut(s) 183
BpuEI CTTGAG 3 cut(s) 74, 304, 622
BsaI GGTCTC 1 cut(s) 587
BsaWI WCCGGW 1 cut(s) 559
BsaXI ACNNNNNCTCC 2 cut(s) 240, 270
Bsc4I CCNNNNNNNGG 2 cut(s) 196, 671
Bse1I ACTGG 1 cut(s) 55
BseAI TCCGGA 1 cut(s) 559
BseGI GGATG 1 cut(s) 502
BseLI CCNNNNNNNGG 2 cut(s) 196, 671
BseMII CTCAG 1 cut(s) 657
BseNI ACTGG 1 cut(s) 55
BseRI GAGGAG 1 cut(s) 360
BseSI GKGCMC 1 cut(s) 261
BseXI GCAGC 1 cut(s) 292
BseYI CCCAGC 1 cut(s) 458
BshFI GGCC 1 cut(s) 664
BsiHKAI GWGCWC 2 cut(s) 261, 660
BsiSI CCGG 1 cut(s) 560
BslFI GGGAC 1 cut(s) 61
BslI CCNNNNNNNGG 2 cut(s) 196, 671
BsmAI GTCTC 1 cut(s) 587
BsmFI GGGAC 1 cut(s) 61
BsmI GAATGC 1 cut(s) 451
BsnI GGCC 1 cut(s) 664
Bso31I GGTCTC 1 cut(s) 587
Bsp1286I GDGCHC 2 cut(s) 261, 660
Bsp13I TCCGGA 1 cut(s) 559
BspACI CCGC 3 cut(s) 31, 598, 718
BspANI GGCC 1 cut(s) 664
BspCNI CTCAG 1 cut(s) 658
BspEI TCCGGA 1 cut(s) 559
BspLI GGNNCC 2 cut(s) 272, 564
BspMAI CTGCAG 1 cut(s) 310
BspTNI GGTCTC 1 cut(s) 587
BsrI ACTGG 1 cut(s) 55
Bst4CI ACNGT 3 cut(s) 98, 635, 747
Bst6I CTCTTC 2 cut(s) 162, 219
BstC8I GCNNGC 1 cut(s) 396
BstDEI CTNAG 1 cut(s) 666
BstENI CCTNNNNNAGG 1 cut(s) 194
BstF5I GGATG 1 cut(s) 502
BstMAI GTCTC 1 cut(s) 587
BstMWI GCNNNNNNNGC 3 cut(s) 314, 323, 455
BstNSI RCATGY 1 cut(s) 398
BstSFI CTRYAG 1 cut(s) 306
BstSLI GKGCMC 1 cut(s) 261
BstV1I GCAGC 1 cut(s) 292
BsuRI GGCC 1 cut(s) 664
BtsCI GGATG 1 cut(s) 502
BtsIMutI CAGTG 1 cut(s) 716
Cac8I GCNNGC 1 cut(s) 396
Cfr13I GGNCC 2 cut(s) 187, 562
Csp6I GTAC 3 cut(s) 94, 582, 643
CviAII CATG 4 cut(s) 79, 85, 395, 411
CviJI RGCY 5 cut(s) 74, 305, 317, 458, 664
CviKI_1 RGCY 5 cut(s) 74, 305, 317, 458, 664
CviQI GTAC 3 cut(s) 94, 582, 643
DdeI CTNAG 1 cut(s) 666
Eam1104I CTCTTC 2 cut(s) 162, 219
EarI CTCTTC 2 cut(s) 162, 219
Eco31I GGTCTC 1 cut(s) 587
Eco47I GGWCC 2 cut(s) 187, 562
Eco57I CTGAAG 1 cut(s) 186
EcoNI CCTNNNNNAGG 1 cut(s) 194
FaeI CATG 4 cut(s) 82, 88, 398, 414
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FaqI GGGAC 1 cut(s) 61
FatI CATG 4 cut(s) 78, 84, 394, 410
FauI CCCGC 1 cut(s) 605
FauNDI CATATG 1 cut(s) 540
Fnu4HI GCNGC 1 cut(s) 306
FokI GGATG 1 cut(s) 509
Fsp4HI GCNGC 1 cut(s) 306
FspBI CTAG 3 cut(s) 342, 450, 470
GluI GCNGC 1 cut(s) 306
GsaI CCCAGC 1 cut(s) 462
HaeIII GGCC 1 cut(s) 664
HapII CCGG 1 cut(s) 560
Hin1II CATG 4 cut(s) 82, 88, 398, 414
HinfI GANTC 1 cut(s) 407
HpaII CCGG 1 cut(s) 560
Hpy166II GTNNAC 1 cut(s) 259
Hpy188III TCNNGA 7 cut(s) 283, 342, 404, 470, 560, 700, 728
Hpy8I GTNNAC 1 cut(s) 259
HpyAV CCTTC 4 cut(s) 9, 38, 203, 487
HpyCH4III ACNGT 3 cut(s) 98, 635, 747
HpyCH4V TGCA 6 cut(s) 196, 259, 308, 332, 394, 629
HpyF10VI GCNNNNNNNGC 3 cut(s) 314, 323, 455
HpyF3I CTNAG 1 cut(s) 666
Hsp92II CATG 4 cut(s) 82, 88, 398, 414
Kpn2I TCCGGA 1 cut(s) 559
LmnI GCTCC 2 cut(s) 455, 562
Lsp1109I GCAGC 1 cut(s) 292
LweI GCATC 1 cut(s) 183
MaeI CTAG 3 cut(s) 342, 450, 470
MaeIII GTNAC 2 cut(s) 121, 713
MboII GAAGA 4 cut(s) 179, 236, 428, 605
MhlI GDGCHC 2 cut(s) 261, 660
MluCI AATT 5 cut(s) 216, 432, 476, 518, 576
MlyI GAGTC 1 cut(s) 416
MnlI CCTC 4 cut(s) 163, 306, 338, 661
MroI TCCGGA 1 cut(s) 559
MroXI GAANNNNTTC 1 cut(s) 171
MseI TTAA 5 cut(s) 215, 219, 237, 252, 575
MslI CAYNNNNRTG 1 cut(s) 83
MspI CCGG 1 cut(s) 560
Mva1269I GAATGC 1 cut(s) 451
MwoI GCNNNNNNNGC 3 cut(s) 314, 323, 455
NdeI CATATG 1 cut(s) 540
NlaIII CATG 4 cut(s) 82, 88, 398, 414
NlaIV GGNNCC 2 cut(s) 272, 564
NspI RCATGY 1 cut(s) 398
PacI TTAATTAA 1 cut(s) 219
PaeI GCATGC 1 cut(s) 398
PctI GAATGC 1 cut(s) 451
PdmI GAANNNNTTC 1 cut(s) 171
PkrI GCNGC 1 cut(s) 307
PleI GAGTC 1 cut(s) 415
PpsI GAGTC 1 cut(s) 415
PshBI ATTAAT 1 cut(s) 575
PspFI CCCAGC 1 cut(s) 458
PspN4I GGNNCC 2 cut(s) 272, 564
PspPI GGNCC 2 cut(s) 187, 562
PstI CTGCAG 1 cut(s) 310
RsaI GTAC 3 cut(s) 95, 583, 644
RsaNI GTAC 3 cut(s) 94, 582, 643
RseI CAYNNNNRTG 1 cut(s) 83
SaqAI TTAA 5 cut(s) 215, 219, 237, 252, 575
SatI GCNGC 1 cut(s) 306
Sau96I GGNCC 2 cut(s) 187, 562
ScaI AGTACT 1 cut(s) 95
SchI GAGTC 1 cut(s) 416
SduI GDGCHC 2 cut(s) 261, 660
SfaNI GCATC 1 cut(s) 183
SfcI CTRYAG 1 cut(s) 306
SinI GGWCC 2 cut(s) 187, 562
SmiMI CAYNNNNRTG 1 cut(s) 83
SmlI CTYRAG 3 cut(s) 89, 283, 601
SmoI CTYRAG 3 cut(s) 89, 283, 601
SphI GCATGC 1 cut(s) 398
Sse9I AATT 5 cut(s) 216, 432, 476, 518, 576
SsiI CCGC 3 cut(s) 31, 598, 718
SspMI CTAG 3 cut(s) 342, 450, 470
TaaI ACNGT 3 cut(s) 98, 635, 747
TaqI TCGA 1 cut(s) 207
TasI AATT 5 cut(s) 216, 432, 476, 518, 576
TatI WGTACW 2 cut(s) 93, 642
Tru1I TTAA 5 cut(s) 215, 219, 237, 252, 575
Tru9I TTAA 5 cut(s) 215, 219, 237, 252, 575
TscAI CASTG 1 cut(s) 716
TseI GCWGC 1 cut(s) 305
TspDTI ATGAA 2 cut(s) 444, 513
TspGWI ACGGA 1 cut(s) 21
TspRI CASTG 1 cut(s) 716
VneI GTGCAC 1 cut(s) 257
VpaK11BI GGWCC 2 cut(s) 187, 562
VspI ATTAAT 1 cut(s) 575
XagI CCTNNNNNAGG 1 cut(s) 194
XapI RAATTY 1 cut(s) 476
XbaI TCTAGA 2 cut(s) 341, 469
XceI RCATGY 1 cut(s) 398
XmnI GAANNNNTTC 1 cut(s) 171
XspI CTAG 3 cut(s) 342, 450, 470
ZrmI AGTACT 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.