FvH4_7g34231

Belongs to the UPP synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0002374
Physical Location & Seq
Reverse (-)
24166972 .. 24168069
1098 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g34231.t1

Sequence Viewer

Length: 963 bp
ATGTTTGTTTATGGGGCTCATTCTATATGCAGGAATGGTGATTATGCTGTTAAGAATACGATGGTGAACCTAGTAATACAGAGTTCTAGGATGGAGAAAAGCGGTGGTAATAGAGCAAACCAGATGTTTTGGAGCATTGTTAGTTTCTTAAGGAGATGTCTTTTTCTTGTGATTTCTGCTTGTCCTATACCTCATCACATTGTCTTCATCATGGACGGAAATAGAAGGTACGCTAAAAAACAGAAGTTGATGGATGGGACTGGACATAGGGTTGGTTTTGTAGCTCTCATGTCCATGCTCAAGTACTGTTATGAGTTGGGTGTGAGATATGTAACAATATATGCTTTTAGTATCGATAACTTCAAAAGGCAACCTGAAGAAGTTCAATCCTTGATGGACCTGATGCATGAGAAAATTGAAGGGTTAATTAAAGAAGAGAGCATAGTTAATCGATATGGAGTTAAGGTGCACTTTATTGGGAACCTAAAGCTCTTGAGTGAACCTGTCAGGCTGGCTGCAGTGAGGGCTATGGTGGCAACTGCAAATAACTCCAGAGGAGTGCTATCAATATGTGTTGCCTACACTTCTACTGATGAGATTGTGCATGCTGTTCAAGAGTCATGTGAAGAAAAATGGAATGAAATTAGTATATTGAATGCTAGTGGAGCTGGGTATGATCTAGATAAATTTGGAGAGAATGAGAATGAGGAAAGGGAAAGCGTTGTAAAGTTGACAGATATTGAAAGGCATATGTATATGGCAGTTGCTCATGACCCTGATATTTTAATTCGTACTTCTGGAGAGACCCGCTTGAGTAACTTTCTTCTGTGGCAGAGTGCATACTGTTGTTTGTACTCTCCCTCTGTGCTATGGCCTGAGATTGGGTTTCGGCATTTTGTTTGGGCAATCTTGAACTTTCAGTGTAACCGCTTATATCTGGAAAGAAAAAAGAAACAGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Prenyltransf

Protein Analysis

321

Amino Acids

36.75

Weight (kDa)

8.49

Isoelectric Point (pI)

46.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prenyltransf PF01255 70 - 309 1.9e-68 Putative undecaprenyl diphosphate synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 102, 808, 928
AcsI RAATTY 1 cut(s) 686
AcuI CTGAAG 1 cut(s) 396
AfaI GTAC 4 cut(s) 230, 305, 793, 854
AfiI CCNNNNNNNGG 1 cut(s) 881
AflII CTTAAG 1 cut(s) 148
AgsI TTSAA 7 cut(s) 364, 386, 419, 614, 655, 743, 913
AluBI AGCT 3 cut(s) 284, 490, 668
AluI AGCT 3 cut(s) 284, 490, 668
Alw21I GWGCWC 1 cut(s) 471
Alw26I GTCTC 1 cut(s) 797
Alw44I GTGCAC 1 cut(s) 467
AoxI GGCC 1 cut(s) 872
ApaLI GTGCAC 1 cut(s) 467
ApeKI GCWGC 1 cut(s) 515
ApoI RAATTY 1 cut(s) 686
Asp700I GAANNNNTTC 1 cut(s) 381
AspS9I GGNCC 1 cut(s) 397
AsuHPI GGTGA 2 cut(s) 50, 76
AvaII GGWCC 1 cut(s) 397
BaeGI GKGCMC 1 cut(s) 471
BanII GRGCYC 1 cut(s) 19
BbsI GAAGAC 1 cut(s) 196
Bbv12I GWGCWC 1 cut(s) 471
BbvI GCAGC 1 cut(s) 502
BccI CCATC 5 cut(s) 55, 85, 244, 248, 388
BcoDI GTCTC 1 cut(s) 797
BfaI CTAG 4 cut(s) 71, 87, 660, 680
BfmI CTRYAG 1 cut(s) 516
BfrI CTTAAG 1 cut(s) 148
BisI GCNGC 1 cut(s) 516
BlsI GCNGC 1 cut(s) 517
BmcAI AGTACT 1 cut(s) 305
Bme18I GGWCC 1 cut(s) 397
BmgT120I GGNCC 1 cut(s) 397
BmiI GGNNCC 1 cut(s) 482
BmsI GCATC 1 cut(s) 393
BpiI GAAGAC 1 cut(s) 196
BpmI CTGGAG 2 cut(s) 535, 819
BpuEI CTTGAG 3 cut(s) 284, 514, 832
Bsa29I ATCGAT 2 cut(s) 354, 451
BsaI GGTCTC 1 cut(s) 797
BsaXI ACNNNNNCTCC 2 cut(s) 450, 480
Bsc4I CCNNNNNNNGG 1 cut(s) 881
Bse1I ACTGG 1 cut(s) 265
BseCI ATCGAT 2 cut(s) 354, 451
BseGI GGATG 2 cut(s) 96, 259
BseLI CCNNNNNNNGG 1 cut(s) 881
BseMII CTCAG 1 cut(s) 867
BseNI ACTGG 1 cut(s) 265
BseRI GAGGAG 1 cut(s) 570
BseSI GKGCMC 1 cut(s) 471
BseXI GCAGC 1 cut(s) 502
BseYI CCCAGC 1 cut(s) 668
BshFI GGCC 1 cut(s) 874
BshVI ATCGAT 2 cut(s) 354, 451
BsiHKAI GWGCWC 1 cut(s) 471
BslFI GGGAC 1 cut(s) 271
BslI CCNNNNNNNGG 1 cut(s) 881
BsmAI GTCTC 1 cut(s) 797
BsmFI GGGAC 1 cut(s) 271
BsmI GAATGC 1 cut(s) 661
BsnI GGCC 1 cut(s) 874
Bso31I GGTCTC 1 cut(s) 797
Bsp1286I GDGCHC 2 cut(s) 19, 471
Bsp143I GATC 1 cut(s) 676
BspACI CCGC 3 cut(s) 102, 808, 928
BspANI GGCC 1 cut(s) 874
BspCNI CTCAG 1 cut(s) 868
BspDI ATCGAT 2 cut(s) 354, 451
BspHI TCATGA 1 cut(s) 769
BspLI GGNNCC 1 cut(s) 482
BspMAI CTGCAG 1 cut(s) 520
BspTI CTTAAG 1 cut(s) 148
BspTNI GGTCTC 1 cut(s) 797
BsrI ACTGG 1 cut(s) 265
BssMI GATC 1 cut(s) 676
Bst4CI ACNGT 3 cut(s) 308, 845, 957
Bst6I CTCTTC 1 cut(s) 429
BstAFI CTTAAG 1 cut(s) 148
BstC8I GCNNGC 2 cut(s) 513, 606
BstDEI CTNAG 1 cut(s) 876
BstF5I GGATG 2 cut(s) 96, 259
BstKTI GATC 1 cut(s) 679
BstMAI GTCTC 1 cut(s) 797
BstMBI GATC 1 cut(s) 676
BstMWI GCNNNNNNNGC 3 cut(s) 524, 533, 665
BstNSI RCATGY 1 cut(s) 608
BstSFI CTRYAG 1 cut(s) 516
BstSLI GKGCMC 1 cut(s) 471
BstV1I GCAGC 1 cut(s) 502
BstV2I GAAGAC 1 cut(s) 196
Bsu15I ATCGAT 2 cut(s) 354, 451
BsuRI GGCC 1 cut(s) 874
BsuTUI ATCGAT 2 cut(s) 354, 451
BtsCI GGATG 2 cut(s) 96, 259
BtsI GCAGTG 1 cut(s) 525
BtsIMutI CAGTG 2 cut(s) 525, 926
Cac8I GCNNGC 2 cut(s) 513, 606
CciI TCATGA 1 cut(s) 769
Cfr13I GGNCC 1 cut(s) 397
ClaI ATCGAT 2 cut(s) 354, 451
Csp6I GTAC 4 cut(s) 229, 304, 792, 853
CviAII CATG 7 cut(s) 211, 289, 295, 407, 605, 621, 770
CviJI RGCY 8 cut(s) 17, 284, 490, 511, 515, 527, 668, 874
CviKI_1 RGCY 8 cut(s) 17, 284, 490, 511, 515, 527, 668, 874
CviQI GTAC 4 cut(s) 229, 304, 792, 853
DdeI CTNAG 1 cut(s) 876
DpnI GATC 1 cut(s) 678
DpnII GATC 1 cut(s) 676
Eam1104I CTCTTC 1 cut(s) 429
EarI CTCTTC 1 cut(s) 429
Eco24I GRGCYC 1 cut(s) 19
Eco31I GGTCTC 1 cut(s) 797
Eco47I GGWCC 1 cut(s) 397
Eco57I CTGAAG 1 cut(s) 396
EcoT22I ATGCAT 1 cut(s) 408
EcoT38I GRGCYC 1 cut(s) 19
FaeI CATG 7 cut(s) 214, 292, 298, 410, 608, 624, 773
FalI AAGNNNNNCTT 2 cut(s) 455, 487
FaqI GGGAC 1 cut(s) 271
FatI CATG 7 cut(s) 210, 288, 294, 406, 604, 620, 769
FauI CCCGC 1 cut(s) 815
FauNDI CATATG 1 cut(s) 750
Fnu4HI GCNGC 1 cut(s) 516
FokI GGATG 2 cut(s) 103, 266
FriOI GRGCYC 1 cut(s) 19
Fsp4HI GCNGC 1 cut(s) 516
FspBI CTAG 4 cut(s) 71, 87, 660, 680
GluI GCNGC 1 cut(s) 516
GsaI CCCAGC 1 cut(s) 672
GsuI CTGGAG 2 cut(s) 535, 819
HaeIII GGCC 1 cut(s) 874
Hin1II CATG 7 cut(s) 214, 292, 298, 410, 608, 624, 773
HincII GTYRAC 1 cut(s) 732
HindII GTYRAC 1 cut(s) 732
HinfI GANTC 1 cut(s) 617
HphI GGTGA 2 cut(s) 50, 76
Hpy166II GTNNAC 4 cut(s) 67, 469, 500, 732
Hpy188III TCNNGA 8 cut(s) 493, 552, 614, 680, 770, 798, 910, 938
Hpy8I GTNNAC 4 cut(s) 67, 469, 500, 732
HpyAV CCTTC 2 cut(s) 219, 413
HpyCH4III ACNGT 3 cut(s) 308, 845, 957
HpyCH4V TGCA 7 cut(s) 30, 406, 469, 518, 542, 604, 839
HpyF10VI GCNNNNNNNGC 3 cut(s) 524, 533, 665
HpyF3I CTNAG 1 cut(s) 876
Hsp92II CATG 7 cut(s) 214, 292, 298, 410, 608, 624, 773
Kzo9I GATC 1 cut(s) 676
LmnI GCTCC 2 cut(s) 132, 665
Lsp1109I GCAGC 1 cut(s) 502
LweI GCATC 1 cut(s) 393
MaeI CTAG 4 cut(s) 71, 87, 660, 680
MaeIII GTNAC 3 cut(s) 331, 815, 923
MalI GATC 1 cut(s) 678
MboI GATC 1 cut(s) 676
MboII GAAGA 5 cut(s) 196, 389, 446, 638, 815
MhlI GDGCHC 2 cut(s) 19, 471
MluCI AATT 5 cut(s) 414, 426, 642, 686, 786
MlyI GAGTC 1 cut(s) 626
MnlI CCTC 5 cut(s) 201, 516, 548, 700, 871
Mph1103I ATGCAT 1 cut(s) 408
MroXI GAANNNNTTC 1 cut(s) 381
MseI TTAA 7 cut(s) 51, 149, 425, 429, 447, 462, 785
MslI CAYNNNNRTG 1 cut(s) 293
MspCI CTTAAG 1 cut(s) 148
Mva1269I GAATGC 1 cut(s) 661
MwoI GCNNNNNNNGC 3 cut(s) 524, 533, 665
NdeI CATATG 1 cut(s) 750
NdeII GATC 1 cut(s) 676
NlaIII CATG 7 cut(s) 214, 292, 298, 410, 608, 624, 773
NlaIV GGNNCC 1 cut(s) 482
NsiI ATGCAT 1 cut(s) 408
NspI RCATGY 1 cut(s) 608
PacI TTAATTAA 1 cut(s) 429
PaeI GCATGC 1 cut(s) 608
PagI TCATGA 1 cut(s) 769
PctI GAATGC 1 cut(s) 661
PdmI GAANNNNTTC 1 cut(s) 381
PkrI GCNGC 1 cut(s) 517
PleI GAGTC 1 cut(s) 625
PpsI GAGTC 1 cut(s) 625
PspFI CCCAGC 1 cut(s) 668
PspN4I GGNNCC 1 cut(s) 482
PspPI GGNCC 1 cut(s) 397
PstI CTGCAG 1 cut(s) 520
RsaI GTAC 4 cut(s) 230, 305, 793, 854
RsaNI GTAC 4 cut(s) 229, 304, 792, 853
RseI CAYNNNNRTG 1 cut(s) 293
SaqAI TTAA 7 cut(s) 51, 149, 425, 429, 447, 462, 785
SatI GCNGC 1 cut(s) 516
Sau3AI GATC 1 cut(s) 676
Sau96I GGNCC 1 cut(s) 397
ScaI AGTACT 1 cut(s) 305
SchI GAGTC 1 cut(s) 626
SduI GDGCHC 2 cut(s) 19, 471
SfaNI GCATC 1 cut(s) 393
SfcI CTRYAG 1 cut(s) 516
SinI GGWCC 1 cut(s) 397
SmiMI CAYNNNNRTG 1 cut(s) 293
SmlI CTYRAG 4 cut(s) 148, 299, 493, 811
SmoI CTYRAG 4 cut(s) 148, 299, 493, 811
SphI GCATGC 1 cut(s) 608
Sse9I AATT 5 cut(s) 414, 426, 642, 686, 786
SsiI CCGC 3 cut(s) 102, 808, 928
SspMI CTAG 4 cut(s) 71, 87, 660, 680
TaaI ACNGT 3 cut(s) 308, 845, 957
TaqI TCGA 2 cut(s) 354, 451
TasI AATT 5 cut(s) 414, 426, 642, 686, 786
TatI WGTACW 2 cut(s) 303, 852
Tru1I TTAA 7 cut(s) 51, 149, 425, 429, 447, 462, 785
Tru9I TTAA 7 cut(s) 51, 149, 425, 429, 447, 462, 785
TscAI CASTG 2 cut(s) 525, 926
TseI GCWGC 1 cut(s) 515
TspDTI ATGAA 2 cut(s) 196, 654
TspGWI ACGGA 1 cut(s) 231
TspRI CASTG 2 cut(s) 525, 926
Vha464I CTTAAG 1 cut(s) 148
VneI GTGCAC 1 cut(s) 467
VpaK11BI GGWCC 1 cut(s) 397
XapI RAATTY 1 cut(s) 686
XbaI TCTAGA 1 cut(s) 679
XceI RCATGY 1 cut(s) 608
XmnI GAANNNNTTC 1 cut(s) 381
XspI CTAG 4 cut(s) 71, 87, 660, 680
ZrmI AGTACT 1 cut(s) 305
Zsp2I ATGCAT 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.