AT2G17680

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0004261
Physical Location & Seq
Forward (+)
7679008 .. 7680378
1371 bp
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UTR
Exon/CDS
Intron
AT2G17680.1

Sequence Viewer

Length: 879 bp
ATGGTGATGATGATGATCAAGAACCATGTAAGATCTATAAGCTTACAATCAAGATCTCATCCTAGCACAGCAGCGATCGAGGAGTCGCTCGACAAATTTCTTATCACTATGAACACGTCGACAATGGCGTCGTCTGAGTCGGTTCACTCCGGTTTATCGGGGTTGGAGGATCTGTACGACTGTTCGGAAGATCTTCTGAAGATGGGTTCGACGCAAAGGGTGTTGTCGTTTAGTGATGAGAAGAAGAAGAAGAAGAGGAAAGTGAAGGGAGAGTTTATGGAGGAAATGCTTGATGGTTCGTTGAGGCTAATGGATATATGCAACGTCTCGAGGGATCTCATGGTTGAGACTCATGAGCATGTTCTTGGTCTTCAGTCTTGTGTTAGGAGAAGGAAAGATGTCGACGTCTCGGGATATGTCGGGTTTAGGAAAAACATGAGGAAAGAAGTGAAGAAGCTTCTTGGATCTTTAAAGAACATTAATGTAGGGTTAGTGATGAGAGATCATGGTTATGATCAAGACGGTGATATTCATTTCTTGGCCGTGATTCATGCAATGAGACGTGTCGTTTATATGACAGTTTCGGTCTTAAAGTCTTTCTTTGAGTTCTTGTCGGGACGACAAAACGGGAACGACGTAAGGAGCAAGTTGGCTTTAGTTCTCATGAACAAGAAGTTTCATGATCACGATAAGATGGTCAAAAACGAGTTGGAGAATGTAGATTCCGCGATTTGTGGAGATTCTATCTCTCATGATGATCTTCATGAGAAGCTTGAGGAAGTTGAGGTATGGATTGGAAAATTCGAGAAGAGTCTTGAAGGATTGTTTCGAGGGTTGATTAAAACACGAGCCTCGCTTCTCAACATAATCTCTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

292

Amino Acids

33.27

Weight (kDa)

8.25

Isoelectric Point (pI)

42.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 51 - 289 7.7e-66 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 127
AatII GACGTC 1 cut(s) 408
AccI GTMKAC 2 cut(s) 119, 402
AccII CGCG 1 cut(s) 728
AciI CCGC 1 cut(s) 726
AclWI GGATC 3 cut(s) 177, 342, 472
AcoI YGGCCR 1 cut(s) 540
AcsI RAATTY 2 cut(s) 95, 800
AcuI CTGAAG 2 cut(s) 218, 356
AcyI GRCGYC 2 cut(s) 128, 405
AfaI GTAC 1 cut(s) 176
AflIII ACRYGT 2 cut(s) 114, 562
AgsI TTSAA 1 cut(s) 818
AjiI CACGTC 2 cut(s) 117, 563
AluBI AGCT 3 cut(s) 42, 457, 772
AluI AGCT 3 cut(s) 42, 457, 772
Alw26I GTCTC 4 cut(s) 331, 341, 412, 553
AlwI GGATC 3 cut(s) 177, 342, 472
Ama87I CYCGRG 2 cut(s) 328, 409
AoxI GGCC 1 cut(s) 540
ApeKI GCWGC 1 cut(s) 71
ApoI RAATTY 2 cut(s) 95, 800
AseI ATTAAT 1 cut(s) 480
Asp700I GAANNNNTTC 1 cut(s) 192
AsuHPI GGTGA 2 cut(s) 16, 536
AvaI CYCGRG 2 cut(s) 328, 409
BauI CACGAG 1 cut(s) 846
BbsI GAAGAC 1 cut(s) 362
BbvI GCAGC 1 cut(s) 83
BccI CCATC 3 cut(s) 196, 287, 688
BceAI ACGGC 1 cut(s) 527
BclI TGATCA 3 cut(s) 15, 514, 682
BcoDI GTCTC 4 cut(s) 331, 341, 412, 553
BfaI CTAG 1 cut(s) 63
BglII AGATCT 3 cut(s) 32, 53, 190
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
BmeT110I CYCGRG 2 cut(s) 328, 409
BmgBI CACGTC 2 cut(s) 117, 563
BpiI GAAGAC 1 cut(s) 362
BpuEI CTTGAG 1 cut(s) 794
BsaBI GATNNNNATC 1 cut(s) 14
BsaHI GRCGYC 2 cut(s) 128, 405
BsaWI WCCGGW 1 cut(s) 149
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bse3DI GCAATG 1 cut(s) 561
Bse8I GATNNNNATC 1 cut(s) 14
BseGI GGATG 1 cut(s) 58
BseJI GATNNNNATC 1 cut(s) 14
BseMI GCAATG 1 cut(s) 561
BseMII CTCAG 1 cut(s) 126
BseRI GAGGAG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 83
Bsh1236I CGCG 1 cut(s) 728
Bsh1285I CGRYCG 1 cut(s) 78
BshFI GGCC 1 cut(s) 542
BsiEI CGRYCG 1 cut(s) 78
BsiHKCI CYCGRG 2 cut(s) 328, 409
BsiSI CCGG 1 cut(s) 150
BslFI GGGAC 1 cut(s) 630
BsmAI GTCTC 4 cut(s) 331, 341, 412, 553
BsmBI CGTCTC 3 cut(s) 331, 412, 553
BsmFI GGGAC 1 cut(s) 630
BsnI GGCC 1 cut(s) 542
BsoBI CYCGRG 2 cut(s) 328, 409
BspACI CCGC 1 cut(s) 726
BspANI GGCC 1 cut(s) 542
BspCNI CTCAG 1 cut(s) 127
BspFNI CGCG 1 cut(s) 728
BspHI TCATGA 5 cut(s) 352, 663, 679, 751, 763
BspPI GGATC 3 cut(s) 177, 342, 472
BsrDI GCAATG 1 cut(s) 561
BssNI GRCGYC 2 cut(s) 128, 405
BssSI CACGAG 1 cut(s) 846
Bst2BI CACGAG 1 cut(s) 846
Bst4CI ACNGT 3 cut(s) 182, 524, 580
Bst6I CTCTTC 2 cut(s) 248, 803
BstACI GRCGYC 2 cut(s) 128, 405
BstDEI CTNAG 1 cut(s) 135
BstF5I GGATG 1 cut(s) 58
BstFNI CGCG 1 cut(s) 728
BstMAI GTCTC 4 cut(s) 331, 341, 412, 553
BstMCI CGRYCG 1 cut(s) 78
BstNSI RCATGY 1 cut(s) 362
BstUI CGCG 1 cut(s) 728
BstV1I GCAGC 1 cut(s) 83
BstV2I GAAGAC 1 cut(s) 362
BstX2I RGATCY 6 cut(s) 32, 53, 169, 190, 334, 464
BstYI RGATCY 6 cut(s) 32, 53, 169, 190, 334, 464
BsuRI GGCC 1 cut(s) 542
BtrI CACGTC 2 cut(s) 117, 563
BtsCI GGATG 1 cut(s) 58
CciI TCATGA 5 cut(s) 352, 663, 679, 751, 763
CseI GACGC 2 cut(s) 117, 220
Csp6I GTAC 1 cut(s) 175
CviJI RGCY 7 cut(s) 42, 307, 457, 542, 653, 772, 851
CviKI_1 RGCY 7 cut(s) 42, 307, 457, 542, 653, 772, 851
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 1 cut(s) 135
DraI TTTAAA 1 cut(s) 471
DrdI GACNNNNNNGTC 1 cut(s) 127
DseDI GACNNNNNNGTC 1 cut(s) 127
EaeI YGGCCR 1 cut(s) 540
Eam1104I CTCTTC 2 cut(s) 248, 803
EarI CTCTTC 2 cut(s) 248, 803
Eco57I CTGAAG 2 cut(s) 218, 356
Eco88I CYCGRG 2 cut(s) 328, 409
Esp3I CGTCTC 3 cut(s) 331, 412, 553
FalI AAGNNNNNCTT 2 cut(s) 584, 616
FaqI GGGAC 1 cut(s) 630
FbaI TGATCA 3 cut(s) 15, 514, 682
FblI GTMKAC 2 cut(s) 119, 402
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 1 cut(s) 63
GluI GCNGC 1 cut(s) 72
HaeIII GGCC 1 cut(s) 542
HapII CCGG 1 cut(s) 150
HgaI GACGC 2 cut(s) 117, 220
Hin1I GRCGYC 2 cut(s) 128, 405
HincII GTYRAC 2 cut(s) 120, 403
HindII GTYRAC 2 cut(s) 120, 403
HindIII AAGCTT 3 cut(s) 40, 455, 770
HinfI GANTC 7 cut(s) 83, 137, 349, 547, 722, 740, 811
HpaII CCGG 1 cut(s) 150
HphI GGTGA 2 cut(s) 16, 536
Hpy166II GTNNAC 3 cut(s) 120, 145, 403
Hpy188I TCNGA 3 cut(s) 136, 187, 198
Hpy8I GTNNAC 3 cut(s) 120, 145, 403
Hpy99I CGWCG 5 cut(s) 121, 133, 214, 407, 638
HpyAV CCTTC 3 cut(s) 259, 384, 812
HpyCH4III ACNGT 3 cut(s) 182, 524, 580
HpyCH4IV ACGT 5 cut(s) 116, 324, 405, 562, 636
HpyCH4V TGCA 2 cut(s) 321, 554
HpyF3I CTNAG 1 cut(s) 135
HpySE526I ACGT 5 cut(s) 116, 324, 405, 562, 636
Hsp92I GRCGYC 2 cut(s) 128, 405
Ksp22I TGATCA 3 cut(s) 15, 514, 682
LmnI GCTCC 1 cut(s) 642
LpnPI CCDG 1 cut(s) 163
Lsp1109I GCAGC 1 cut(s) 83
MaeI CTAG 1 cut(s) 63
MaeII ACGT 5 cut(s) 116, 324, 405, 562, 636
MflI RGATCY 6 cut(s) 32, 53, 169, 190, 334, 464
MluCI AATT 2 cut(s) 95, 800
MlyI GAGTC 4 cut(s) 92, 146, 343, 820
MmeI TCCRAC 2 cut(s) 144, 690
MroXI GAANNNNTTC 1 cut(s) 192
MseI TTAA 4 cut(s) 470, 480, 590, 840
MslI CAYNNNNRTG 2 cut(s) 357, 510
MspI CCGG 1 cut(s) 150
MvnI CGCG 1 cut(s) 728
NspI RCATGY 1 cut(s) 362
PaeR7I CTCGAG 1 cut(s) 328
PagI TCATGA 5 cut(s) 352, 663, 679, 751, 763
PcsI WCGNNNNNNNCGW 2 cut(s) 125, 633
PdmI GAANNNNTTC 1 cut(s) 192
PfeI GAWTC 3 cut(s) 547, 722, 740
PkrI GCNGC 1 cut(s) 73
Ple19I CGATCG 1 cut(s) 78
PleI GAGTC 4 cut(s) 91, 145, 343, 819
PpsI GAGTC 4 cut(s) 91, 145, 343, 819
PshBI ATTAAT 1 cut(s) 480
PsuI RGATCY 6 cut(s) 32, 53, 169, 190, 334, 464
PvuI CGATCG 1 cut(s) 78
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
RseI CAYNNNNRTG 2 cut(s) 357, 510
SalI GTCGAC 2 cut(s) 118, 401
SaqAI TTAA 4 cut(s) 470, 480, 590, 840
SatI GCNGC 1 cut(s) 72
SchI GAGTC 4 cut(s) 92, 146, 343, 820
SetI ASST 9 cut(s) 44, 119, 327, 408, 459, 565, 639, 774, 789
Sfr274I CTCGAG 1 cut(s) 328
SlaI CTCGAG 1 cut(s) 328
SmiMI CAYNNNNRTG 2 cut(s) 357, 510
SmlI CTYRAG 2 cut(s) 328, 773
SmoI CTYRAG 2 cut(s) 328, 773
Sse9I AATT 2 cut(s) 95, 800
SsiI CCGC 1 cut(s) 726
SspMI CTAG 1 cut(s) 63
TaaI ACNGT 3 cut(s) 182, 524, 580
TaiI ACGT 5 cut(s) 119, 327, 408, 565, 639
TaqI TCGA 8 cut(s) 78, 90, 119, 209, 329, 402, 804, 829
TaqII GACCGA 1 cut(s) 574
TasI AATT 2 cut(s) 95, 800
TfiI GAWTC 3 cut(s) 547, 722, 740
Tru1I TTAA 4 cut(s) 470, 480, 590, 840
Tru9I TTAA 4 cut(s) 470, 480, 590, 840
TseI GCWGC 1 cut(s) 71
TspDTI ATGAA 6 cut(s) 125, 521, 539, 668, 680, 752
VspI ATTAAT 1 cut(s) 480
XapI RAATTY 2 cut(s) 95, 800
XceI RCATGY 1 cut(s) 362
XhoI CTCGAG 1 cut(s) 328
XmiI GTMKAC 2 cut(s) 119, 402
XmnI GAANNNNTTC 1 cut(s) 192
XspI CTAG 1 cut(s) 63
ZraI GACGTC 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.