Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004261

Physical Location & Seq

Genomic Coordinates Forward (+)

5378839 .. 5381077

Gene Structure 2239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0068900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGTCGAAGAAAAGAGGACTTTCGCTGGAGGAGAAGCGTGAGAAGATGCTCCAGATCTTCTACGATTCTCAGGATTTCTTTCTTCTGAAGGAGCTTGAGAAGTCGGGCCCGAAGAAAGGTGTTATTTCTCAGTCTGTGAAAGATGTGATCCAAAGCTTGGTGGATGATGACCTCGTTTTCAAAGACAAGATTGGAACCTCTGTGTACTTTTGGAGTCTCCCTAGCTCTGCTGGGAATCAGCTAAGGACTGTGTATAGCAGACTTGAATCTGATCTGCAGAGCAGTAAGAAGCGGCATGTAGAACTTGTTGACCAGTGTAATGCGCTGAAGAAGGGACGAGAGGAATCTGATGAACGAGAGGAGGCCTTAGCGGAGCTAAAAGAGATTGAGCTCAAGTACAATAAGCTGAAGGAAGAGATGGGGCAGTATGCAGATAATGATCCAGCTGCCTTGCAAGCAATGAAGAATGCAATTGAAGTTGCCCATGCAGCAGCTAATCGATGGACAGACAACATTTTCACGGTGCGTCAGTGGTGCTCAAATAACTTCCAGTCAGCCAAAGAGCAGCTTGAAAATATGTACAAGGAGGTTGGAATAACAGAAGACTTTGACTATCTGGAGATGTCACCAGTTCCACTGAGCTCAGTTGGTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF241

Protein Analysis

218

Amino Acids

24.99

Weight (kDa)

5.06

Isoelectric Point (pI)

62.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mnd1	PF03962	16 - 74	4.4e-25	Mnd1 HTH domain
LZ3wCH	PF18517	150 - 206	2.8e-19	Leucine zipper with capping helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17680 AT4G35690 AT4G35710
fragaria_vesca	FvH4_1g10690 FvH4_1g10710
malus_domestica	MD02G1120800.v1.1 MD02G1121000.v1.1 MD15G1234800.v1.1 MD15G1234900.v1.1
prunus_persica	Prupe.7G178200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0097861 RchiOBHm_Chr2g0097871
rosa_laevigata	RLG00000016741
rosa_multiflora	Rmu_co8105842.1_g000001 Rmu_sc0000974.1_g000030 Rmu_sc0008442.1_g000014 Rmu_sc0008442.1_g000017 Rmu_sc0020316.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144480 Rroxscaffold_2G00144520
rosa_rugosa	Rorug02G0068800 Rorug02G0068900
rosa_samantha	Rh2AG115400 Rh2AG115600 Rh2BG118400 Rh2BG118500 Rh2CG119900 Rh2CG120000 Rh2DG119700 Rh2DG119800
rosa_wichuraiana	Rw2G009020 Rw2G009040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	157
AciI	CCGC	2 cut(s)	292, 371
AclWI	GGATC	2 cut(s)	142, 434
AcuI	CTGAAG	3 cut(s)	107, 347, 428
AfaI	GTAC	3 cut(s)	206, 398, 581
AfiI	CCNNNNNNNGG	2 cut(s)	116, 157
AgsI	TTSAA	4 cut(s)	181, 266, 476, 572
Alw21I	GWGCWC	3 cut(s)	393, 539, 644
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	2 cut(s)	142, 434
AoxI	GGCC	2 cut(s)	106, 363
ApaI	GGGCCC	1 cut(s)	110
ApeKI	GCWGC	4 cut(s)	446, 488, 491, 565
AspLEI	GCGC	1 cut(s)	325
AspS9I	GGNCC	2 cut(s)	106, 107
AsuHPI	GGTGA	1 cut(s)	618
BaeGI	GKGCMC	1 cut(s)	110
BanII	GRGCYC	3 cut(s)	110, 393, 644
BbsI	GAAGAC	1 cut(s)	609
Bbv12I	GWGCWC	3 cut(s)	393, 539, 644
BbvI	GCAGC	4 cut(s)	433, 500, 503, 577
BccI	CCATC	2 cut(s)	412, 495
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	1 cut(s)	222
BfmI	CTRYAG	1 cut(s)	275
BglII	AGATCT	1 cut(s)	54
BisI	GCNGC	5 cut(s)	293, 447, 489, 492, 566
BlsI	GCNGC	5 cut(s)	294, 448, 490, 493, 567
BmgT120I	GGNCC	2 cut(s)	106, 107
BmiI	GGNNCC	2 cut(s)	108, 196
BmsI	GCATC	1 cut(s)	36
BpiI	GAAGAC	1 cut(s)	609
BpmI	CTGGAG	3 cut(s)	35, 47, 638
Bpu10I	CCTNAGC	2 cut(s)	242, 367
BpuEI	CTTGAG	2 cut(s)	116, 377
Bsa29I	ATCGAT	1 cut(s)	499
BsaBI	GATNNNNATC	1 cut(s)	438
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 157
Bse1I	ACTGG	3 cut(s)	313, 550, 629
Bse3DI	GCAATG	1 cut(s)	465
Bse8I	GATNNNNATC	1 cut(s)	438
BseCI	ATCGAT	1 cut(s)	499
BseGI	GGATG	1 cut(s)	169
BseJI	GATNNNNATC	1 cut(s)	438
BseLI	CCNNNNNNNGG	2 cut(s)	116, 157
BseMI	GCAATG	1 cut(s)	465
BseMII	CTCAG	4 cut(s)	83, 143, 629, 657
BseNI	ACTGG	3 cut(s)	313, 550, 629
BseRI	GAGGAG	2 cut(s)	44, 374
BseSI	GKGCMC	1 cut(s)	110
BseXI	GCAGC	4 cut(s)	433, 500, 503, 577
BseYI	CCCAGC	1 cut(s)	230
BshFI	GGCC	2 cut(s)	108, 365
BshVI	ATCGAT	1 cut(s)	499
BsiHKAI	GWGCWC	3 cut(s)	393, 539, 644
BslFI	GGGAC	1 cut(s)	348
BslI	CCNNNNNNNGG	2 cut(s)	116, 157
BsmAI	GTCTC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	348
BsmI	GAATGC	1 cut(s)	472
BsnI	GGCC	2 cut(s)	108, 365
Bsp120I	GGGCCC	1 cut(s)	106
Bsp1286I	GDGCHC	4 cut(s)	110, 393, 539, 644
Bsp1407I	TGTACA	1 cut(s)	579
Bsp143I	GATC	4 cut(s)	54, 147, 271, 439
BspACI	CCGC	2 cut(s)	292, 371
BspANI	GGCC	2 cut(s)	108, 365
BspCNI	CTCAG	4 cut(s)	82, 142, 630, 656
BspDI	ATCGAT	1 cut(s)	499
BspLI	GGNNCC	2 cut(s)	108, 196
BspMAI	CTGCAG	1 cut(s)	279
BspPI	GGATC	2 cut(s)	142, 434
BsrDI	GCAATG	1 cut(s)	465
BsrGI	TGTACA	1 cut(s)	579
BsrI	ACTGG	3 cut(s)	313, 550, 629
BssMI	GATC	4 cut(s)	54, 147, 271, 439
Bst4CI	ACNGT	2 cut(s)	250, 523
Bst6I	CTCTTC	1 cut(s)	408
BstAUI	TGTACA	1 cut(s)	579
BstC8I	GCNNGC	1 cut(s)	456
BstDEI	CTNAG	6 cut(s)	69, 129, 242, 367, 638, 643
BstF5I	GGATG	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	4 cut(s)	57, 150, 274, 442
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	4 cut(s)	54, 147, 271, 439
BstMWI	GCNNNNNNNGC	2 cut(s)	455, 488
BstNSI	RCATGY	1 cut(s)	299
BstSFI	CTRYAG	1 cut(s)	275
BstSLI	GKGCMC	1 cut(s)	110
BstV1I	GCAGC	4 cut(s)	433, 500, 503, 577
BstV2I	GAAGAC	1 cut(s)	609
BstX2I	RGATCY	1 cut(s)	54
BstYI	RGATCY	1 cut(s)	54
Bsu15I	ATCGAT	1 cut(s)	499
BsuRI	GGCC	2 cut(s)	108, 365
BsuTUI	ATCGAT	1 cut(s)	499
BtsCI	GGATG	1 cut(s)	169
BtsIMutI	CAGTG	3 cut(s)	320, 536, 635
Cac8I	GCNNGC	1 cut(s)	456
CfoI	GCGC	1 cut(s)	325
Cfr13I	GGNCC	2 cut(s)	106, 107
ClaI	ATCGAT	1 cut(s)	499
CseI	GACGC	1 cut(s)	515
Csp6I	GTAC	3 cut(s)	205, 397, 580
CviAII	CATG	2 cut(s)	296, 485
CviQI	GTAC	3 cut(s)	205, 397, 580
DdeI	CTNAG	6 cut(s)	69, 129, 242, 367, 638, 643
DpnI	GATC	4 cut(s)	56, 149, 273, 441
DpnII	GATC	4 cut(s)	54, 147, 271, 439
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
Ecl136II	GAGCTC	2 cut(s)	391, 642
Eco147I	AGGCCT	1 cut(s)	365
Eco24I	GRGCYC	3 cut(s)	110, 393, 644
Eco53kI	GAGCTC	2 cut(s)	391, 642
Eco57I	CTGAAG	3 cut(s)	107, 347, 428
EcoICRI	GAGCTC	2 cut(s)	391, 642
EcoT38I	GRGCYC	3 cut(s)	110, 393, 644
FaeI	CATG	2 cut(s)	299, 488
FaiI	YATR	5 cut(s)	255, 297, 429, 486, 578
FalI	AAGNNNNNCTT	2 cut(s)	552, 584
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	2 cut(s)	295, 484
Fnu4HI	GCNGC	5 cut(s)	293, 447, 489, 492, 566
FokI	GGATG	1 cut(s)	176
FriOI	GRGCYC	3 cut(s)	110, 393, 644
Fsp4HI	GCNGC	5 cut(s)	293, 447, 489, 492, 566
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	1 cut(s)	324
GluI	GCNGC	5 cut(s)	293, 447, 489, 492, 566
GsaI	CCCAGC	1 cut(s)	234
GsuI	CTGGAG	3 cut(s)	35, 47, 638
HaeIII	GGCC	2 cut(s)	108, 365
HgaI	GACGC	1 cut(s)	515
HhaI	GCGC	1 cut(s)	325
Hin1II	CATG	2 cut(s)	299, 488
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HindIII	AAGCTT	1 cut(s)	154
HinfI	GANTC	5 cut(s)	65, 214, 235, 266, 344
HphI	GGTGA	1 cut(s)	618
Hpy166II	GTNNAC	2 cut(s)	205, 310
Hpy188I	TCNGA	3 cut(s)	87, 271, 349
Hpy188III	TCNNGA	3 cut(s)	52, 71, 617
Hpy8I	GTNNAC	2 cut(s)	205, 310
HpyAV	CCTTC	3 cut(s)	82, 325, 403
HpyCH4III	ACNGT	2 cut(s)	250, 523
HpyCH4V	TGCA	5 cut(s)	277, 431, 454, 470, 488
HpyF10VI	GCNNNNNNNGC	2 cut(s)	455, 488
HpyF3I	CTNAG	6 cut(s)	69, 129, 242, 367, 638, 643
Hsp92II	CATG	2 cut(s)	299, 488
HspAI	GCGC	1 cut(s)	323
Kzo9I	GATC	4 cut(s)	54, 147, 271, 439
LmnI	GCTCC	3 cut(s)	54, 91, 373
LpnPI	CCDG	9 cut(s)	11, 56, 65, 216, 326, 456, 563, 602, 642
Lsp1109I	GCAGC	4 cut(s)	433, 500, 503, 577
LweI	GCATC	1 cut(s)	36
MaeI	CTAG	1 cut(s)	222
MaeIII	GTNAC	1 cut(s)	624
MalI	GATC	4 cut(s)	56, 149, 273, 441
MboI	GATC	4 cut(s)	54, 147, 271, 439
MboII	GAAGA	9 cut(s)	19, 49, 55, 74, 124, 340, 425, 475, 614
MfeI	CAATTG	1 cut(s)	471
MflI	RGATCY	1 cut(s)	54
MhlI	GDGCHC	4 cut(s)	110, 393, 539, 644
MluCI	AATT	1 cut(s)	471
MlyI	GAGTC	1 cut(s)	223
MmeI	TCCRAC	1 cut(s)	571
MnlI	CCTC	8 cut(s)	8, 22, 182, 208, 334, 352, 355, 580
MspA1I	CMGCKG	1 cut(s)	446
MunI	CAATTG	1 cut(s)	471
Mva1269I	GAATGC	1 cut(s)	472
MwoI	GCNNNNNNNGC	2 cut(s)	455, 488
NdeII	GATC	4 cut(s)	54, 147, 271, 439
NlaIII	CATG	2 cut(s)	299, 488
NlaIV	GGNNCC	2 cut(s)	108, 196
NmuCI	GTSAC	1 cut(s)	624
NspI	RCATGY	1 cut(s)	299
PceI	AGGCCT	1 cut(s)	365
PctI	GAATGC	1 cut(s)	472
PfeI	GAWTC	4 cut(s)	65, 235, 266, 344
PflMI	CCANNNNNTGG	1 cut(s)	157
PkrI	GCNGC	5 cut(s)	294, 448, 490, 493, 567
PleI	GAGTC	1 cut(s)	222
PpsI	GAGTC	1 cut(s)	222
Psp124BI	GAGCTC	2 cut(s)	393, 644
PspFI	CCCAGC	1 cut(s)	230
PspN4I	GGNNCC	2 cut(s)	108, 196
PspOMI	GGGCCC	1 cut(s)	106
PspPI	GGNCC	2 cut(s)	106, 107
PstI	CTGCAG	1 cut(s)	279
PsuI	RGATCY	1 cut(s)	54
PvuII	CAGCTG	1 cut(s)	446
RsaI	GTAC	3 cut(s)	206, 398, 581
RsaNI	GTAC	3 cut(s)	205, 397, 580
SacI	GAGCTC	2 cut(s)	393, 644
SatI	GCNGC	5 cut(s)	293, 447, 489, 492, 566
Sau3AI	GATC	4 cut(s)	54, 147, 271, 439
Sau96I	GGNCC	2 cut(s)	106, 107
SchI	GAGTC	1 cut(s)	223
SduI	GDGCHC	4 cut(s)	110, 393, 539, 644
SfaNI	GCATC	1 cut(s)	36
SfcI	CTRYAG	1 cut(s)	275
SmlI	CTYRAG	2 cut(s)	95, 392
SmoI	CTYRAG	2 cut(s)	95, 392
Sse9I	AATT	1 cut(s)	471
SseBI	AGGCCT	1 cut(s)	365
SsiI	CCGC	2 cut(s)	292, 371
SspMI	CTAG	1 cut(s)	222
SstI	GAGCTC	2 cut(s)	393, 644
StuI	AGGCCT	1 cut(s)	365
TaaI	ACNGT	2 cut(s)	250, 523
TaqI	TCGA	2 cut(s)	5, 499
TasI	AATT	1 cut(s)	471
TatI	WGTACW	3 cut(s)	204, 396, 579
TauI	GCSGC	1 cut(s)	295
TfiI	GAWTC	4 cut(s)	65, 235, 266, 344
TscAI	CASTG	3 cut(s)	320, 536, 642
TseFI	GTSAC	1 cut(s)	624
TseI	GCWGC	4 cut(s)	446, 488, 491, 565
Tsp45I	GTSAC	1 cut(s)	624
TspDTI	ATGAA	2 cut(s)	366, 476
TspRI	CASTG	3 cut(s)	320, 536, 642
Van91I	CCANNNNNTGG	1 cut(s)	157
XceI	RCATGY	1 cut(s)	299
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.