Rw2G009040

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0004261
Physical Location & Seq
Forward (+)
9092168 .. 9093520
1353 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G009040.1

Sequence Viewer

Length: 852 bp
ATGGCTGCCAAGTACCCTGTCAGATCAATCAGCTTGCCCTCAAGGTCTCACCCAACAACTGTTAGAGTTGAAGAAGAGCTCAGTAGGCTCCAATCATGGGAGTCAACTTCATCTGCTTCAACATCAGACTCAATCTGTAGAGGTCTGTCTGGTCTTGAAGAGTTGTATGATTGTGTTGATGATCTTCTCCAAATGACATCAACCCAACAGCTACTTAAATGCATGGATGAGTTGTTGGATGGATCAGTGAAGCTTCTAGACATATGTGGGATCACAAGGGATTTCATGTTACAAATCAAACAACATGTCCTTGCTCTTCAATCTGCTCTTAGGAGAAGAAAGGGAGACTCGAGCATTGAAACTAGCATTGCCAACTACACTAGCTTCAGCAAGAAAATGAAGAAGGATGCCAAGAAATTGATCTCACAGTTGAAACAAGCAGACATCAAGATTGGGTCATCGCAACTTCTAGAGCAAGATCAACATCTTGCCGCAGTGATTAGGGTTCTTCGACAAGTTTGTGCAAAGAACATGTCCATCTTCCAATCCCTCTTGGTGTTCTTGGCTGTTCCAGTTTCCAAGTCAAACAAGTGGTCTTTGGTATCAAAGTTGATGCACAAAGGAATCGTAGCATGTGAATCTCAGGCAGACATTAAAGGGCATGAGTTGGATGGTGTGAATTCTGCTCTATCCTCACTATGCAAATCTTCTGAAGTTGAGAAGATTCAAATTGCACATCAGAAATTGGAGGCTTTGGAAGTCTGCATTGAAGGTCTTGAGAATGGTTTGGAAAGCGTATTTAGGCGCTTGATCAAAACAAGAGCTTCTCTATTGAACATAATCTCGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

283

Amino Acids

31.41

Weight (kDa)

8.72

Isoelectric Point (pI)

58.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 48 - 280 1.7e-83 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 492
AclWI GGATC 2 cut(s) 250, 278
AcsI RAATTY 1 cut(s) 679
AcuI CTGAAG 2 cut(s) 370, 732
AfaI GTAC 1 cut(s) 14
AfiI CCNNNNNNNGG 1 cut(s) 97
AflIII ACRYGT 2 cut(s) 304, 531
AgsI TTSAA 9 cut(s) 71, 120, 158, 320, 359, 433, 728, 770, 835
AluBI AGCT 6 cut(s) 33, 79, 211, 253, 384, 824
AluI AGCT 6 cut(s) 33, 79, 211, 253, 384, 824
Alw21I GWGCWC 1 cut(s) 81
Alw26I GTCTC 2 cut(s) 51, 339
AlwI GGATC 2 cut(s) 250, 278
Ama87I CYCGRG 1 cut(s) 349
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 679
ArsI GACNNNNNNTTYG 6 cut(s) 291, 323, 518, 550, 578, 610
AspLEI GCGC 1 cut(s) 807
AsuHPI GGTGA 1 cut(s) 41
AvaI CYCGRG 1 cut(s) 349
BanII GRGCYC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 81
BccI CCATC 3 cut(s) 233, 545, 665
BclI TGATCA 1 cut(s) 810
BcoDI GTCTC 2 cut(s) 51, 339
BfaI CTAG 4 cut(s) 257, 363, 381, 470
BfmI CTRYAG 1 cut(s) 136
BfoI RGCGCY 1 cut(s) 808
BisI GCNGC 2 cut(s) 6, 492
BlsI GCNGC 2 cut(s) 7, 493
BmeT110I CYCGRG 1 cut(s) 349
BmiI GGNNCC 1 cut(s) 89
BmsI GCATC 2 cut(s) 397, 603
BpuEI CTTGAG 2 cut(s) 25, 797
BsaBI GATNNNNATC 1 cut(s) 483
BsaI GGTCTC 1 cut(s) 51
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 572
Bse3DI GCAATG 1 cut(s) 366
Bse8I GATNNNNATC 1 cut(s) 483
BseGI GGATG 4 cut(s) 232, 244, 412, 676
BseJI GATNNNNATC 1 cut(s) 483
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMI GCAATG 1 cut(s) 366
BseMII CTCAG 2 cut(s) 94, 656
BseNI ACTGG 1 cut(s) 572
BsiHKAI GWGCWC 1 cut(s) 81
BsiHKCI CYCGRG 1 cut(s) 349
BslI CCNNNNNNNGG 1 cut(s) 97
BsmAI GTCTC 2 cut(s) 51, 339
Bso31I GGTCTC 1 cut(s) 51
BsoBI CYCGRG 1 cut(s) 349
Bsp1286I GDGCHC 1 cut(s) 81
Bsp143I GATC 7 cut(s) 23, 181, 242, 270, 420, 478, 810
BspACI CCGC 1 cut(s) 492
BspCNI CTCAG 2 cut(s) 93, 655
BspLI GGNNCC 1 cut(s) 89
BspPI GGATC 2 cut(s) 250, 278
BspQI GCTCTTC 2 cut(s) 69, 321
BspTNI GGTCTC 1 cut(s) 51
BsrDI GCAATG 1 cut(s) 366
BsrI ACTGG 1 cut(s) 572
BssMI GATC 7 cut(s) 23, 181, 242, 270, 420, 478, 810
Bst4CI ACNGT 2 cut(s) 61, 429
Bst6I CTCTTC 3 cut(s) 69, 153, 321
BstC8I GCNNGC 1 cut(s) 35
BstDEI CTNAG 3 cut(s) 80, 329, 642
BstF5I GGATG 4 cut(s) 232, 244, 412, 676
BstH2I RGCGCY 1 cut(s) 808
BstHHI GCGC 1 cut(s) 807
BstKTI GATC 7 cut(s) 26, 184, 245, 273, 423, 481, 813
BstMAI GTCTC 2 cut(s) 51, 339
BstMBI GATC 7 cut(s) 23, 181, 242, 270, 420, 478, 810
BstMWI GCNNNNNNNGC 1 cut(s) 85
BstNSI RCATGY 3 cut(s) 308, 535, 636
BstSFI CTRYAG 1 cut(s) 136
BtgZI GCGATG 1 cut(s) 444
BtsCI GGATG 4 cut(s) 232, 244, 412, 676
BtsI GCAGTG 1 cut(s) 501
BtsIMutI CAGTG 2 cut(s) 252, 501
Cac8I GCNNGC 1 cut(s) 35
CfoI GCGC 1 cut(s) 807
Csp6I GTAC 1 cut(s) 13
CviAII CATG 7 cut(s) 96, 223, 286, 305, 532, 633, 662
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 3 cut(s) 80, 329, 642
DpnI GATC 7 cut(s) 25, 183, 244, 272, 422, 480, 812
DpnII GATC 7 cut(s) 23, 181, 242, 270, 420, 478, 810
Eam1104I CTCTTC 3 cut(s) 69, 153, 321
EarI CTCTTC 3 cut(s) 69, 153, 321
Ecl136II GAGCTC 1 cut(s) 79
Eco24I GRGCYC 1 cut(s) 81
Eco31I GGTCTC 1 cut(s) 51
Eco53kI GAGCTC 1 cut(s) 79
Eco57I CTGAAG 2 cut(s) 370, 732
Eco88I CYCGRG 1 cut(s) 349
EcoICRI GAGCTC 1 cut(s) 79
EcoRI GAATTC 1 cut(s) 679
EcoT22I ATGCAT 1 cut(s) 224
EcoT38I GRGCYC 1 cut(s) 81
FaeI CATG 7 cut(s) 99, 226, 289, 308, 535, 636, 665
FatI CATG 7 cut(s) 95, 222, 285, 304, 531, 632, 661
FauNDI CATATG 1 cut(s) 263
FbaI TGATCA 1 cut(s) 810
Fnu4HI GCNGC 2 cut(s) 6, 492
FokI GGATG 4 cut(s) 239, 251, 419, 683
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 2 cut(s) 6, 492
FspBI CTAG 4 cut(s) 257, 363, 381, 470
GlaI GCGC 1 cut(s) 806
GluI GCNGC 2 cut(s) 6, 492
HaeII RGCGCY 1 cut(s) 808
HhaI GCGC 1 cut(s) 807
Hin1II CATG 7 cut(s) 99, 226, 289, 308, 535, 636, 665
Hin6I GCGC 1 cut(s) 805
HinP1I GCGC 1 cut(s) 805
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HindIII AAGCTT 1 cut(s) 251
HinfI GANTC 6 cut(s) 101, 128, 347, 624, 638, 724
HphI GGTGA 1 cut(s) 41
Hpy166II GTNNAC 1 cut(s) 105
Hpy188I TCNGA 4 cut(s) 23, 127, 712, 741
Hpy188III TCNNGA 5 cut(s) 155, 257, 448, 470, 776
Hpy8I GTNNAC 1 cut(s) 105
HpyAV CCTTC 2 cut(s) 397, 764
HpyCH4III ACNGT 2 cut(s) 61, 429
HpyCH4V TGCA 6 cut(s) 222, 524, 616, 702, 734, 765
HpyF10VI GCNNNNNNNGC 1 cut(s) 85
HpyF3I CTNAG 3 cut(s) 80, 329, 642
Hsp92II CATG 7 cut(s) 99, 226, 289, 308, 535, 636, 665
HspAI GCGC 1 cut(s) 805
Ksp22I TGATCA 1 cut(s) 810
Kzo9I GATC 7 cut(s) 23, 181, 242, 270, 420, 478, 810
LguI GCTCTTC 2 cut(s) 69, 321
LmnI GCTCC 1 cut(s) 93
LpnPI CCDG 4 cut(s) 30, 135, 585, 629
LweI GCATC 2 cut(s) 397, 603
MaeI CTAG 4 cut(s) 257, 363, 381, 470
MaeIII GTNAC 1 cut(s) 288
MalI GATC 7 cut(s) 25, 183, 244, 272, 422, 480, 812
MboI GATC 7 cut(s) 23, 181, 242, 270, 420, 478, 810
MhlI GDGCHC 1 cut(s) 81
MluCI AATT 4 cut(s) 416, 679, 729, 743
MlyI GAGTC 3 cut(s) 110, 122, 341
MmeI TCCRAC 2 cut(s) 216, 648
MnlI CCTC 5 cut(s) 49, 134, 560, 703, 742
Mph1103I ATGCAT 1 cut(s) 224
MseI TTAA 2 cut(s) 216, 654
MwoI GCNNNNNNNGC 1 cut(s) 85
NdeI CATATG 1 cut(s) 263
NdeII GATC 7 cut(s) 23, 181, 242, 270, 420, 478, 810
NlaIII CATG 7 cut(s) 99, 226, 289, 308, 535, 636, 665
NlaIV GGNNCC 1 cut(s) 89
NsiI ATGCAT 1 cut(s) 224
NspI RCATGY 3 cut(s) 308, 535, 636
PaeR7I CTCGAG 1 cut(s) 349
PciI ACATGT 2 cut(s) 304, 531
PciSI GCTCTTC 2 cut(s) 69, 321
PfeI GAWTC 3 cut(s) 624, 638, 724
PkrI GCNGC 2 cut(s) 7, 493
PleI GAGTC 3 cut(s) 109, 122, 341
PpsI GAGTC 3 cut(s) 109, 122, 341
PscI ACATGT 2 cut(s) 304, 531
Psp124BI GAGCTC 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 89
PspXI VCTCGAGB 1 cut(s) 349
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SacI GAGCTC 1 cut(s) 81
SapI GCTCTTC 2 cut(s) 69, 321
SaqAI TTAA 2 cut(s) 216, 654
SatI GCNGC 2 cut(s) 6, 492
Sau3AI GATC 7 cut(s) 23, 181, 242, 270, 420, 478, 810
SchI GAGTC 3 cut(s) 110, 122, 341
SduI GDGCHC 1 cut(s) 81
SetI ASST 9 cut(s) 35, 47, 81, 145, 213, 255, 386, 775, 826
SfaNI GCATC 2 cut(s) 397, 603
SfcI CTRYAG 1 cut(s) 136
Sfr274I CTCGAG 1 cut(s) 349
SlaI CTCGAG 1 cut(s) 349
SmlI CTYRAG 3 cut(s) 40, 349, 776
SmoI CTYRAG 3 cut(s) 40, 349, 776
Sse9I AATT 4 cut(s) 416, 679, 729, 743
SsiI CCGC 1 cut(s) 492
SspMI CTAG 4 cut(s) 257, 363, 381, 470
SstI GAGCTC 1 cut(s) 81
TaaI ACNGT 2 cut(s) 61, 429
TaqI TCGA 2 cut(s) 350, 511
TasI AATT 4 cut(s) 416, 679, 729, 743
TauI GCSGC 1 cut(s) 494
TfiI GAWTC 3 cut(s) 624, 638, 724
Tru1I TTAA 2 cut(s) 216, 654
Tru9I TTAA 2 cut(s) 216, 654
TscAI CASTG 2 cut(s) 252, 501
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 3 cut(s) 99, 274, 413
TspRI CASTG 2 cut(s) 252, 501
XapI RAATTY 1 cut(s) 679
XbaI TCTAGA 2 cut(s) 256, 469
XceI RCATGY 3 cut(s) 308, 535, 636
XhoI CTCGAG 1 cut(s) 349
XspI CTAG 4 cut(s) 257, 363, 381, 470
Zsp2I ATGCAT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.