AT4G35690

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0004261
Physical Location & Seq
Forward (+)
16921800 .. 16922963
1164 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G35690.1

Sequence Viewer

Length: 855 bp
ATGTCGAATATGCTCGTCAAGAATCAACTAAGATCTATAAGCTTACCTTCAAGCTCGCATCCAAGCACGACCGGTATCGAGGAATCTCTTAACAAGGTCAAAACGATTAACACCATGACGGGTTCGTCCGAATCAGTCTTGATGGGCTTGGAGGGTTTGGAGGAGCTCTACAATTGTACGGAAGATTTTCTGAAAATGGGCTCAACGCAACGGGTTATGTCATCATCTGATGGATCCGAGTTTATGGAGGAGATGCTTGACGGTTCGTTGAGGCTAATGGATATATGCAGTGTCTCGAGGGATCTCATGGTGGAGACTCAAGAGCATGTTCGTGGTGTTCAATCATGTGTCAGGAGAAAGAAAGTAGTCGGAGGAGAAGACCAACTCGATGTCGCCGTCGCGGGGTATGTCGGATTTAGAAAGAACATGAGAAAAGAAGCTAAGAGGCTTCTTGGATCTTTGAAGAACATTGATGGAGGTTTAAGTTCATCATCATCAGTAAATAATGGTGAGCAAGAAGAACATCTTGTGGTGGTTGTAGACGCCATGAGACAAGTAGTTTCCGTTAGCGTCGCGGTGTTGAGGTCGTTTTTGGAATTCTTATCCGGACGACGACAAAGTAACATTAAGAGCAAGCTGGCTTCGGTACTAAAGAAAAAGAAGGTTCACCATGTTGAGGAGACCAAGAACGAGTTGGAGAATTTGGATCTCGAGATATTCTGTTCTCGTAATGATCTACAAAAGAAGCTTGAGGAAGTTGAGATGAGCATTGATGGATTCGAGAAGAAACTAGAAGGACTATTTCGAAGGTTGATAAGAACACGAGCCTCGCTTCTCAACATAATATCTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

284

Amino Acids

31.75

Weight (kDa)

7.03

Isoelectric Point (pI)

58.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 49 - 281 2.1e-68 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 124
AccI GTMKAC 1 cut(s) 540
AccII CGCG 2 cut(s) 401, 575
AccIII TCCGGA 1 cut(s) 605
AciI CCGC 2 cut(s) 401, 575
AclWI GGATC 5 cut(s) 228, 241, 309, 463, 714
AcsI RAATTY 2 cut(s) 596, 700
AcyI GRCGYC 1 cut(s) 543
AfaI GTAC 2 cut(s) 178, 648
AfiI CCNNNNNNNGG 2 cut(s) 402, 676
AgeI ACCGGT 1 cut(s) 71
AgsI TTSAA 3 cut(s) 51, 341, 463
AluBI AGCT 6 cut(s) 42, 54, 166, 440, 637, 748
AluI AGCT 6 cut(s) 42, 54, 166, 440, 637, 748
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 4 cut(s) 298, 308, 544, 674
AlwI GGATC 5 cut(s) 228, 241, 309, 463, 714
Ama87I CYCGRG 2 cut(s) 295, 710
Aor13HI TCCGGA 1 cut(s) 605
ApoI RAATTY 2 cut(s) 596, 700
AsiGI ACCGGT 1 cut(s) 71
Asp700I GAANNNNTTC 1 cut(s) 186
AsuHPI GGTGA 2 cut(s) 521, 659
AsuII TTCGAA 1 cut(s) 805
AvaI CYCGRG 2 cut(s) 295, 710
BamHI GGATCC 1 cut(s) 233
BanII GRGCYC 2 cut(s) 168, 203
BauI CACGAG 1 cut(s) 822
BbsI GAAGAC 1 cut(s) 384
Bbv12I GWGCWC 1 cut(s) 168
BccI CCATC 4 cut(s) 136, 224, 467, 767
BceAI ACGGC 1 cut(s) 380
BcoDI GTCTC 4 cut(s) 298, 308, 544, 674
BfaI CTAG 1 cut(s) 791
BglII AGATCT 1 cut(s) 32
BmeT110I CYCGRG 2 cut(s) 295, 710
BmiI GGNNCC 1 cut(s) 235
BmsI GCATC 2 cut(s) 67, 243
BpiI GAAGAC 1 cut(s) 384
Bpu14I TTCGAA 1 cut(s) 805
BpuEI CTTGAG 2 cut(s) 303, 770
BsaHI GRCGYC 1 cut(s) 543
BsaI GGTCTC 1 cut(s) 674
BsaWI WCCGGW 2 cut(s) 71, 605
Bsc4I CCNNNNNNNGG 2 cut(s) 402, 676
Bse118I RCCGGY 1 cut(s) 71
BseAI TCCGGA 1 cut(s) 605
BseGI GGATG 1 cut(s) 58
BseLI CCNNNNNNNGG 2 cut(s) 402, 676
BseRI GAGGAG 4 cut(s) 176, 263, 387, 692
Bsh1236I CGCG 2 cut(s) 401, 575
Bsh1285I CGRYCG 1 cut(s) 72
BshTI ACCGGT 1 cut(s) 71
BsiEI CGRYCG 1 cut(s) 72
BsiHKAI GWGCWC 1 cut(s) 168
BsiHKCI CYCGRG 2 cut(s) 295, 710
BsiSI CCGG 2 cut(s) 72, 606
BslI CCNNNNNNNGG 2 cut(s) 402, 676
BsmAI GTCTC 4 cut(s) 298, 308, 544, 674
Bso31I GGTCTC 1 cut(s) 674
BsoBI CYCGRG 2 cut(s) 295, 710
Bsp119I TTCGAA 1 cut(s) 805
Bsp1286I GDGCHC 2 cut(s) 168, 203
Bsp13I TCCGGA 1 cut(s) 605
Bsp143I GATC 6 cut(s) 32, 233, 301, 455, 706, 733
BspACI CCGC 2 cut(s) 401, 575
BspEI TCCGGA 1 cut(s) 605
BspFNI CGCG 2 cut(s) 401, 575
BspLI GGNNCC 1 cut(s) 235
BspPI GGATC 5 cut(s) 228, 241, 309, 463, 714
BspT104I TTCGAA 1 cut(s) 805
BspTNI GGTCTC 1 cut(s) 674
BsrFI RCCGGY 1 cut(s) 71
BssAI RCCGGY 1 cut(s) 71
BssMI GATC 6 cut(s) 32, 233, 301, 455, 706, 733
BssNI GRCGYC 1 cut(s) 543
BssSI CACGAG 1 cut(s) 822
Bst2BI CACGAG 1 cut(s) 822
Bst4CI ACNGT 1 cut(s) 263
BstACI GRCGYC 1 cut(s) 543
BstBI TTCGAA 1 cut(s) 805
BstC8I GCNNGC 3 cut(s) 56, 635, 639
BstDEI CTNAG 2 cut(s) 29, 441
BstF5I GGATG 1 cut(s) 58
BstFNI CGCG 2 cut(s) 401, 575
BstKTI GATC 6 cut(s) 35, 236, 304, 458, 709, 736
BstMAI GTCTC 4 cut(s) 298, 308, 544, 674
BstMBI GATC 6 cut(s) 32, 233, 301, 455, 706, 733
BstMCI CGRYCG 1 cut(s) 72
BstNSI RCATGY 1 cut(s) 329
BstUI CGCG 2 cut(s) 401, 575
BstV2I GAAGAC 1 cut(s) 384
BstX2I RGATCY 5 cut(s) 32, 233, 301, 455, 706
BstYI RGATCY 5 cut(s) 32, 233, 301, 455, 706
BtsCI GGATG 1 cut(s) 58
BtsI GCAGTG 1 cut(s) 295
BtsIMutI CAGTG 1 cut(s) 295
Cac8I GCNNGC 3 cut(s) 56, 635, 639
Cfr10I RCCGGY 1 cut(s) 71
CseI GACGC 2 cut(s) 551, 559
Csp6I GTAC 2 cut(s) 177, 647
CspAI ACCGGT 1 cut(s) 71
CviAII CATG 7 cut(s) 115, 307, 326, 345, 427, 547, 671
CviQI GTAC 2 cut(s) 177, 647
DdeI CTNAG 2 cut(s) 29, 441
DpnI GATC 6 cut(s) 34, 235, 303, 457, 708, 735
DpnII GATC 6 cut(s) 32, 233, 301, 455, 706, 733
DrdI GACNNNNNNGTC 1 cut(s) 124
DseDI GACNNNNNNGTC 1 cut(s) 124
Ecl136II GAGCTC 1 cut(s) 166
Eco24I GRGCYC 2 cut(s) 168, 203
Eco31I GGTCTC 1 cut(s) 674
Eco53kI GAGCTC 1 cut(s) 166
Eco88I CYCGRG 2 cut(s) 295, 710
EcoICRI GAGCTC 1 cut(s) 166
EcoRI GAATTC 1 cut(s) 596
EcoT38I GRGCYC 2 cut(s) 168, 203
FaeI CATG 7 cut(s) 118, 310, 329, 348, 430, 550, 674
FalI AAGNNNNNCTT 4 cut(s) 31, 63, 510, 542
FatI CATG 7 cut(s) 114, 306, 325, 344, 426, 546, 670
FauI CCCGC 1 cut(s) 394
FblI GTMKAC 1 cut(s) 540
FokI GGATG 1 cut(s) 45
FriOI GRGCYC 2 cut(s) 168, 203
FspBI CTAG 1 cut(s) 791
HapII CCGG 2 cut(s) 72, 606
HgaI GACGC 2 cut(s) 551, 559
Hin1I GRCGYC 1 cut(s) 543
Hin1II CATG 7 cut(s) 118, 310, 329, 348, 430, 550, 674
HindIII AAGCTT 2 cut(s) 40, 746
HinfI GANTC 5 cut(s) 22, 83, 131, 316, 777
HpaII CCGG 2 cut(s) 72, 606
HphI GGTGA 2 cut(s) 521, 659
Hpy166II GTNNAC 2 cut(s) 541, 667
Hpy188I TCNGA 6 cut(s) 130, 192, 229, 238, 371, 413
Hpy188III TCNNGA 9 cut(s) 19, 139, 295, 320, 352, 606, 710, 712, 781
Hpy8I GTNNAC 2 cut(s) 541, 667
Hpy99I CGWCG 3 cut(s) 401, 575, 615
HpyAV CCTTC 4 cut(s) 57, 655, 788, 801
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4V TGCA 1 cut(s) 288
HpyF3I CTNAG 2 cut(s) 29, 441
Hsp92I GRCGYC 1 cut(s) 543
Hsp92II CATG 7 cut(s) 118, 310, 329, 348, 430, 550, 674
Kpn2I TCCGGA 1 cut(s) 605
Kzo9I GATC 6 cut(s) 32, 233, 301, 455, 706, 733
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 4 cut(s) 85, 337, 619, 623
LweI GCATC 2 cut(s) 67, 243
MaeI CTAG 1 cut(s) 791
MaeIII GTNAC 1 cut(s) 620
MalI GATC 6 cut(s) 34, 235, 303, 457, 708, 735
MboI GATC 6 cut(s) 32, 233, 301, 455, 706, 733
MboII GAAGA 5 cut(s) 194, 389, 475, 530, 796
MfeI CAATTG 1 cut(s) 172
MflI RGATCY 5 cut(s) 32, 233, 301, 455, 706
MhlI GDGCHC 2 cut(s) 168, 203
MluCI AATT 3 cut(s) 172, 596, 700
MlyI GAGTC 1 cut(s) 310
MmeI TCCRAC 3 cut(s) 349, 391, 675
MroI TCCGGA 1 cut(s) 605
MroXI GAANNNNTTC 1 cut(s) 186
MseI TTAA 4 cut(s) 90, 108, 482, 627
MslI CAYNNNNRTG 1 cut(s) 330
MspI CCGG 2 cut(s) 72, 606
MunI CAATTG 1 cut(s) 172
MvnI CGCG 2 cut(s) 401, 575
NdeII GATC 6 cut(s) 32, 233, 301, 455, 706, 733
NlaIII CATG 7 cut(s) 118, 310, 329, 348, 430, 550, 674
NlaIV GGNNCC 1 cut(s) 235
NspI RCATGY 1 cut(s) 329
NspV TTCGAA 1 cut(s) 805
PaeR7I CTCGAG 2 cut(s) 295, 710
PcsI WCGNNNNNNNCGW 1 cut(s) 393
PdmI GAANNNNTTC 1 cut(s) 186
PfeI GAWTC 4 cut(s) 22, 83, 131, 777
PinAI ACCGGT 1 cut(s) 71
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
Psp124BI GAGCTC 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 235
PsuI RGATCY 5 cut(s) 32, 233, 301, 455, 706
RsaI GTAC 2 cut(s) 178, 648
RsaNI GTAC 2 cut(s) 177, 647
RseI CAYNNNNRTG 1 cut(s) 330
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 4 cut(s) 90, 108, 482, 627
Sau3AI GATC 6 cut(s) 32, 233, 301, 455, 706, 733
SchI GAGTC 1 cut(s) 310
SduI GDGCHC 2 cut(s) 168, 203
SfaNI GCATC 2 cut(s) 67, 243
Sfr274I CTCGAG 2 cut(s) 295, 710
SfuI TTCGAA 1 cut(s) 805
SlaI CTCGAG 2 cut(s) 295, 710
SmiMI CAYNNNNRTG 1 cut(s) 330
SmlI CTYRAG 4 cut(s) 295, 318, 710, 749
SmoI CTYRAG 4 cut(s) 295, 318, 710, 749
Sse9I AATT 3 cut(s) 172, 596, 700
SsiI CCGC 2 cut(s) 401, 575
SspMI CTAG 1 cut(s) 791
SstI GAGCTC 1 cut(s) 168
TaaI ACNGT 1 cut(s) 263
TaqI TCGA 7 cut(s) 5, 78, 296, 387, 711, 780, 805
TasI AATT 3 cut(s) 172, 596, 700
TfiI GAWTC 4 cut(s) 22, 83, 131, 777
Tru1I TTAA 4 cut(s) 90, 108, 482, 627
Tru9I TTAA 4 cut(s) 90, 108, 482, 627
TscAI CASTG 1 cut(s) 295
TspDTI ATGAA 1 cut(s) 477
TspGWI ACGGA 2 cut(s) 194, 553
TspRI CASTG 1 cut(s) 295
XapI RAATTY 2 cut(s) 596, 700
XceI RCATGY 1 cut(s) 329
XcmI CCANNNNNNNNNTGG 1 cut(s) 691
XhoI CTCGAG 2 cut(s) 295, 710
XmiI GTMKAC 1 cut(s) 540
XmnI GAANNNNTTC 1 cut(s) 186
XspI CTAG 1 cut(s) 791
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.