Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004261

Physical Location & Seq

Genomic Coordinates Reverse (-)

5853428 .. 5854297

Gene Structure 870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g10690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGCAGCCAAGTACCAACTCAGATCAATCAGCTTGCCTACAAGGTCTCACCCAACAACTGCCAGAGTTGAAGAAGAGCTCAGCAGACTACAATCATGGGAGTCCACTACTTCATCTGCTTCAACATCCGACTCAATCTGCAGAGGTCTATGTGGTCTTGAAGAGCTATATGATTGTGTTGATGATCTTCTTCAAATGGCATCAACCCAACAGCTACTCTCTCAACACCAACAAGAGAAATGCATGGATGAGTTGTTGGATGGATCAGTGAAACTTCTAGACATATGTGGAATCACAAGGGATTTCATGTTACAAGTCAAAGAACATGTCTTTGCTCTTCAATCTGCTCTTAGAAGACGAAAGGGAGACTCGAGCATTGAAACCAGCATCGCCAACTACACTAGCTTCAGCAAGAAAATGAAGAAGGATGCCAAGAAATTAATCTCACAGTTGAAGCAAGCAGACAACATGATTGTATCACAACCTCTAGAGCAAGATCTGCATCTAGTCGCAGTGATTAGGGTTCTTCGACAAGTTTGTGCAAAGAACATGTCCATCTTCCAATCCCTCTTGGTGTTCTTGGCAGTTCCAGTTTCCAAGTCAAACAGGTGGTCTTTGGTTTCAAAGTTGATGCACAAAGGAGTCGTAGCATGTGAATCTCAGACAGACATTAACGGGCATGAGTTGGATGGTGTGGATTCTGCTCTATCCTCGCTATGCAAATCTGCTGAAGTTGAGAAGATTCGAATTGCACGTAAGAAATTGGAGGCTTTGGAAGTCTGCATTGAAGGCCTCGAGAGTGGTCTGGAAAGCGTATTTAGGCGCTTGATCAAAACAAGAGCTTCTCTATTGAACATAATCTCACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF241

Protein Analysis

290

Amino Acids

32.27

Weight (kDa)

8.33

Isoelectric Point (pI)

60.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BPS1	PF03087	49 - 286	9.7e-89	Protein BPS1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17680 AT4G35690 AT4G35710
fragaria_vesca	FvH4_1g10690 FvH4_1g10710
malus_domestica	MD02G1120800.v1.1 MD02G1121000.v1.1 MD15G1234800.v1.1 MD15G1234900.v1.1
prunus_persica	Prupe.7G178200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0097861 RchiOBHm_Chr2g0097871
rosa_laevigata	RLG00000016741
rosa_multiflora	Rmu_co8105842.1_g000001 Rmu_sc0000974.1_g000030 Rmu_sc0008442.1_g000014 Rmu_sc0008442.1_g000017 Rmu_sc0020316.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144480 Rroxscaffold_2G00144520
rosa_rugosa	Rorug02G0068800 Rorug02G0068900
rosa_samantha	Rh2AG115400 Rh2AG115600 Rh2BG118400 Rh2BG118500 Rh2CG119900 Rh2CG120000 Rh2DG119700 Rh2DG119800
rosa_wichuraiana	Rw2G009020 Rw2G009040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	271
AcuI	CTGAAG	2 cut(s)	391, 750
AfaI	GTAC	1 cut(s)	14
AflIII	ACRYGT	2 cut(s)	325, 549
AluBI	AGCT	6 cut(s)	33, 79, 166, 214, 405, 842
AluI	AGCT	6 cut(s)	33, 79, 166, 214, 405, 842
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	2 cut(s)	51, 360
AlwI	GGATC	1 cut(s)	271
Ama87I	CYCGRG	2 cut(s)	370, 794
AoxI	GGCC	1 cut(s)	790
ApeKI	GCWGC	1 cut(s)	5
ArsI	GACNNNNNNTTYG	6 cut(s)	312, 344, 536, 568, 596, 628
AseI	ATTAAT	1 cut(s)	440
AspLEI	GCGC	1 cut(s)	825
AsuHPI	GGTGA	1 cut(s)	41
AsuII	TTCGAA	1 cut(s)	745
AvaI	CYCGRG	2 cut(s)	370, 794
BanII	GRGCYC	1 cut(s)	81
BbsI	GAAGAC	1 cut(s)	361
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	3 cut(s)	254, 563, 683
BclI	TGATCA	1 cut(s)	828
BcoDI	GTCTC	2 cut(s)	51, 360
BfaI	CTAG	4 cut(s)	278, 402, 488, 506
BfmI	CTRYAG	1 cut(s)	139
BfoI	RGCGCY	1 cut(s)	826
BglII	AGATCT	1 cut(s)	496
BisI	GCNGC	1 cut(s)	6
BlpI	GCTNAGC	1 cut(s)	80
BlsI	GCNGC	1 cut(s)	7
BmeT110I	CYCGRG	2 cut(s)	370, 794
BmsI	GCATC	5 cut(s)	209, 396, 418, 511, 621
BpiI	GAAGAC	1 cut(s)	361
Bpu1102I	GCTNAGC	1 cut(s)	80
Bpu14I	TTCGAA	1 cut(s)	745
BsaAI	YACGTR	1 cut(s)	755
BsaBI	GATNNNNATC	1 cut(s)	501
BsaI	GGTCTC	1 cut(s)	51
Bse1I	ACTGG	1 cut(s)	590
Bse8I	GATNNNNATC	1 cut(s)	501
BseGI	GGATG	5 cut(s)	125, 253, 265, 433, 694
BseJI	GATNNNNATC	1 cut(s)	501
BseMII	CTCAG	3 cut(s)	34, 94, 674
BseNI	ACTGG	1 cut(s)	590
BseXI	GCAGC	1 cut(s)	17
BshFI	GGCC	1 cut(s)	792
BsiHKAI	GWGCWC	1 cut(s)	81
BsiHKCI	CYCGRG	2 cut(s)	370, 794
BsmAI	GTCTC	2 cut(s)	51, 360
BsnI	GGCC	1 cut(s)	792
Bso31I	GGTCTC	1 cut(s)	51
BsoBI	CYCGRG	2 cut(s)	370, 794
Bsp119I	TTCGAA	1 cut(s)	745
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	5 cut(s)	23, 184, 263, 496, 828
Bsp1720I	GCTNAGC	1 cut(s)	80
BspANI	GGCC	1 cut(s)	792
BspCNI	CTCAG	3 cut(s)	33, 93, 673
BspMAI	CTGCAG	1 cut(s)	143
BspPI	GGATC	1 cut(s)	271
BspQI	GCTCTTC	3 cut(s)	69, 156, 342
BspT104I	TTCGAA	1 cut(s)	745
BspTNI	GGTCTC	1 cut(s)	51
BsrI	ACTGG	1 cut(s)	590
BssMI	GATC	5 cut(s)	23, 184, 263, 496, 828
Bst4CI	ACNGT	1 cut(s)	450
Bst6I	CTCTTC	3 cut(s)	69, 156, 342
BstAPI	GCANNNNNTGC	1 cut(s)	499
BstBAI	YACGTR	1 cut(s)	755
BstBI	TTCGAA	1 cut(s)	745
BstC8I	GCNNGC	2 cut(s)	35, 459
BstDEI	CTNAG	4 cut(s)	20, 80, 350, 660
BstF5I	GGATG	5 cut(s)	125, 253, 265, 433, 694
BstH2I	RGCGCY	1 cut(s)	826
BstHHI	GCGC	1 cut(s)	825
BstKTI	GATC	5 cut(s)	26, 187, 266, 499, 831
BstMAI	GTCTC	2 cut(s)	51, 360
BstMBI	GATC	5 cut(s)	23, 184, 263, 496, 828
BstMWI	GCNNNNNNNGC	2 cut(s)	499, 789
BstNSI	RCATGY	3 cut(s)	329, 553, 654
BstSFI	CTRYAG	1 cut(s)	139
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	1 cut(s)	361
BstX2I	RGATCY	1 cut(s)	496
BstYI	RGATCY	1 cut(s)	496
BsuRI	GGCC	1 cut(s)	792
BtgZI	GCGATG	1 cut(s)	373
BtsCI	GGATG	5 cut(s)	125, 253, 265, 433, 694
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	2 cut(s)	273, 519
Cac8I	GCNNGC	2 cut(s)	35, 459
CfoI	GCGC	1 cut(s)	825
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	8 cut(s)	96, 244, 307, 326, 469, 550, 651, 680
CviJI	RGCY	9 cut(s)	8, 33, 79, 166, 214, 405, 770, 792, 842
CviKI_1	RGCY	9 cut(s)	8, 33, 79, 166, 214, 405, 770, 792, 842
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	4 cut(s)	20, 80, 350, 660
DpnI	GATC	5 cut(s)	25, 186, 265, 498, 830
DpnII	GATC	5 cut(s)	23, 184, 263, 496, 828
Eam1104I	CTCTTC	3 cut(s)	69, 156, 342
EarI	CTCTTC	3 cut(s)	69, 156, 342
Ecl136II	GAGCTC	1 cut(s)	79
Eco147I	AGGCCT	1 cut(s)	792
Eco24I	GRGCYC	1 cut(s)	81
Eco31I	GGTCTC	1 cut(s)	51
Eco53kI	GAGCTC	1 cut(s)	79
Eco57I	CTGAAG	2 cut(s)	391, 750
Eco88I	CYCGRG	2 cut(s)	370, 794
EcoICRI	GAGCTC	1 cut(s)	79
EcoT22I	ATGCAT	1 cut(s)	245
EcoT38I	GRGCYC	1 cut(s)	81
FaeI	CATG	8 cut(s)	99, 247, 310, 329, 472, 553, 654, 683
FatI	CATG	8 cut(s)	95, 243, 306, 325, 468, 549, 650, 679
FauNDI	CATATG	1 cut(s)	284
FbaI	TGATCA	1 cut(s)	828
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	5 cut(s)	112, 260, 272, 440, 701
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	4 cut(s)	278, 402, 488, 506
GlaI	GCGC	1 cut(s)	824
GluI	GCNGC	1 cut(s)	6
HaeII	RGCGCY	1 cut(s)	826
HaeIII	GGCC	1 cut(s)	792
HhaI	GCGC	1 cut(s)	825
Hin1II	CATG	8 cut(s)	99, 247, 310, 329, 472, 553, 654, 683
Hin6I	GCGC	1 cut(s)	823
HinP1I	GCGC	1 cut(s)	823
HinfI	GANTC	8 cut(s)	101, 131, 291, 368, 642, 656, 698, 742
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	1 cut(s)	105
Hpy188I	TCNGA	3 cut(s)	23, 130, 663
Hpy188III	TCNNGA	5 cut(s)	158, 278, 488, 796, 806
Hpy8I	GTNNAC	1 cut(s)	105
HpyAV	CCTTC	2 cut(s)	418, 782
HpyCH4III	ACNGT	1 cut(s)	450
HpyCH4IV	ACGT	1 cut(s)	754
HpyCH4V	TGCA	8 cut(s)	141, 243, 502, 542, 634, 720, 752, 783
HpyF10VI	GCNNNNNNNGC	2 cut(s)	499, 789
HpyF3I	CTNAG	4 cut(s)	20, 80, 350, 660
HpySE526I	ACGT	1 cut(s)	754
Hsp92II	CATG	8 cut(s)	99, 247, 310, 329, 472, 553, 654, 683
HspAI	GCGC	1 cut(s)	823
Ksp22I	TGATCA	1 cut(s)	828
Kzo9I	GATC	5 cut(s)	23, 184, 263, 496, 828
LguI	GCTCTTC	3 cut(s)	69, 156, 342
LpnPI	CCDG	5 cut(s)	76, 397, 592, 603, 791
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	5 cut(s)	209, 396, 418, 511, 621
MaeI	CTAG	4 cut(s)	278, 402, 488, 506
MaeII	ACGT	1 cut(s)	754
MaeIII	GTNAC	1 cut(s)	309
MalI	GATC	5 cut(s)	25, 186, 265, 498, 830
MboI	GATC	5 cut(s)	23, 184, 263, 496, 828
MflI	RGATCY	1 cut(s)	496
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	3 cut(s)	437, 747, 761
MlyI	GAGTC	4 cut(s)	110, 125, 362, 651
MmeI	TCCRAC	3 cut(s)	153, 237, 666
MnlI	CCTC	6 cut(s)	137, 495, 578, 721, 760, 803
Mph1103I	ATGCAT	1 cut(s)	245
MseI	TTAA	2 cut(s)	440, 672
MwoI	GCNNNNNNNGC	2 cut(s)	499, 789
NdeI	CATATG	1 cut(s)	284
NdeII	GATC	5 cut(s)	23, 184, 263, 496, 828
NlaIII	CATG	8 cut(s)	99, 247, 310, 329, 472, 553, 654, 683
NsiI	ATGCAT	1 cut(s)	245
NspI	RCATGY	3 cut(s)	329, 553, 654
NspV	TTCGAA	1 cut(s)	745
PaeR7I	CTCGAG	2 cut(s)	370, 794
PceI	AGGCCT	1 cut(s)	792
PciI	ACATGT	2 cut(s)	325, 549
PciSI	GCTCTTC	3 cut(s)	69, 156, 342
PcsI	WCGNNNNNNNCGW	1 cut(s)	751
PfeI	GAWTC	4 cut(s)	291, 656, 698, 742
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	4 cut(s)	109, 125, 362, 650
PpsI	GAGTC	4 cut(s)	109, 125, 362, 650
Ppu21I	YACGTR	1 cut(s)	755
PscI	ACATGT	2 cut(s)	325, 549
PshBI	ATTAAT	1 cut(s)	440
Psp124BI	GAGCTC	1 cut(s)	81
PspXI	VCTCGAGB	1 cut(s)	370
PstI	CTGCAG	1 cut(s)	143
PsuI	RGATCY	1 cut(s)	496
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SacI	GAGCTC	1 cut(s)	81
SapI	GCTCTTC	3 cut(s)	69, 156, 342
SaqAI	TTAA	2 cut(s)	440, 672
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	5 cut(s)	23, 184, 263, 496, 828
SchI	GAGTC	4 cut(s)	110, 125, 362, 651
SduI	GDGCHC	1 cut(s)	81
SfaNI	GCATC	5 cut(s)	209, 396, 418, 511, 621
SfcI	CTRYAG	1 cut(s)	139
Sfr274I	CTCGAG	2 cut(s)	370, 794
SfuI	TTCGAA	1 cut(s)	745
SlaI	CTCGAG	2 cut(s)	370, 794
SmlI	CTYRAG	2 cut(s)	370, 794
SmoI	CTYRAG	2 cut(s)	370, 794
Sse9I	AATT	3 cut(s)	437, 747, 761
SseBI	AGGCCT	1 cut(s)	792
SspMI	CTAG	4 cut(s)	278, 402, 488, 506
SstI	GAGCTC	1 cut(s)	81
StuI	AGGCCT	1 cut(s)	792
TaaI	ACNGT	1 cut(s)	450
TaiI	ACGT	1 cut(s)	757
TaqI	TCGA	4 cut(s)	371, 529, 745, 795
TasI	AATT	3 cut(s)	437, 747, 761
TfiI	GAWTC	4 cut(s)	291, 656, 698, 742
Tru1I	TTAA	2 cut(s)	440, 672
Tru9I	TTAA	2 cut(s)	440, 672
TscAI	CASTG	2 cut(s)	273, 519
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	3 cut(s)	102, 295, 434
TspRI	CASTG	2 cut(s)	273, 519
VspI	ATTAAT	1 cut(s)	440
XbaI	TCTAGA	2 cut(s)	277, 487
XceI	RCATGY	3 cut(s)	329, 553, 654
XhoI	CTCGAG	2 cut(s)	370, 794
XspI	CTAG	4 cut(s)	278, 402, 488, 506
Zsp2I	ATGCAT	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.