RLG00000016741

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0004261
Physical Location & Seq
Reverse (-)
9605372 .. 9606241
870 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016741

Sequence Viewer

Length: 870 bp
ATGGCTGCCAAGTACCATGTCAGATCAATCAGCTTGCCTTCAAGGTCTCACCCAACAACTGTTAGAGTTGAAGAAGAGCTCAGCAGGCTCCAATCATGGGAGTCAATTTCATCTGCTTCAACATCAGACTCAATCTGCGGAGGTCTATCTGGTCTTGAAGAGCTGTATGCTTGTGTTGATGATCTTCTCCAAATGGCATCAACCCAACAGCTACTCTCTCAACACCAACAAGAGAAATGCATGGATGAGTTGTTGGATGGATCAGTGAAGCTTCTAGACATATGTGGGATCACAAGGGATTTCATGTTACAAGTCAAAGAACATGTCTTTGCTCTTCAGTCTGCTCTTAGGAGAAGGAAGGGAGACTCAAGCATTGAAACTAGCATTGCCAACTACACTAGCTTCAGCAAGAAAATGAAGAAGGATGCCAAGAAATTGATCTCACAGTTGAAACAAGCAGACATCAAGATTGGGTCATCACAACTTCTAGAGCAAGATCAGCATCTCGCTGCAGTGATTAGGGTTCTTCGACAAGTTTGTGCAGAGAACATGTCCATCTTCCAATCCCTCTTGGTGTTCTTGGCTGTTCCAGTTTCCAAGTCAAACAAGTGGTCTTTGGTATCAAAGTTGATGCACAAAGGAGTCGTAGCATGTGAATCTCAGGCAGACATTAAAGCGCATGAGTTGGATGGTGTGAATTCTGCTATATCCTCACTATGCAAATCTTCTGAAGTTGAGAAAATTCAAATTGCACATCAGAAATTGGAGGCTTTGGAAGTCTGCCTTGTAGGTCTTGAGAGTGGTTTGGAAAGCGTATTTAGGCTCTTGATCAAAACAAGAGCTTCTCTATTGAACATAATCTCACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

290

Amino Acids

31.94

Weight (kDa)

7.6

Isoelectric Point (pI)

59.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 48 - 286 2.1e-86 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 138
AclWI GGATC 2 cut(s) 268, 296
AcsI RAATTY 2 cut(s) 697, 741
AcuI CTGAAG 3 cut(s) 320, 388, 750
AfaI GTAC 1 cut(s) 14
AfiI CCNNNNNNNGG 1 cut(s) 97
AflIII ACRYGT 2 cut(s) 322, 549
AgsI TTSAA 8 cut(s) 42, 71, 120, 158, 377, 451, 746, 853
AluBI AGCT 7 cut(s) 33, 79, 163, 211, 271, 402, 842
AluI AGCT 7 cut(s) 33, 79, 163, 211, 271, 402, 842
Alw21I GWGCWC 1 cut(s) 81
Alw26I GTCTC 2 cut(s) 51, 357
AlwI GGATC 2 cut(s) 268, 296
ApeKI GCWGC 2 cut(s) 5, 509
ApoI RAATTY 2 cut(s) 697, 741
ArsI GACNNNNNNTTYG 4 cut(s) 309, 341, 596, 628
AspLEI GCGC 1 cut(s) 679
AsuHPI GGTGA 1 cut(s) 41
BanII GRGCYC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 496
BccI CCATC 3 cut(s) 251, 563, 683
BclI TGATCA 1 cut(s) 828
BcoDI GTCTC 2 cut(s) 51, 357
BfaI CTAG 4 cut(s) 275, 381, 399, 488
BfmI CTRYAG 1 cut(s) 510
BisI GCNGC 2 cut(s) 6, 510
BlpI GCTNAGC 1 cut(s) 80
BlsI GCNGC 2 cut(s) 7, 511
BmiI GGNNCC 1 cut(s) 89
BmsI GCATC 4 cut(s) 206, 415, 511, 621
Bpu1102I GCTNAGC 1 cut(s) 80
BpuEI CTTGAG 2 cut(s) 352, 815
BsaBI GATNNNNATC 1 cut(s) 501
BsaI GGTCTC 1 cut(s) 51
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 590
Bse3DI GCAATG 1 cut(s) 384
Bse8I GATNNNNATC 1 cut(s) 501
BseGI GGATG 4 cut(s) 250, 262, 430, 694
BseJI GATNNNNATC 1 cut(s) 501
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMI GCAATG 1 cut(s) 384
BseMII CTCAG 2 cut(s) 94, 674
BseNI ACTGG 1 cut(s) 590
BseXI GCAGC 1 cut(s) 496
BsgI GTGCAG 1 cut(s) 561
BsiHKAI GWGCWC 1 cut(s) 81
BslI CCNNNNNNNGG 1 cut(s) 97
BsmAI GTCTC 2 cut(s) 51, 357
Bso31I GGTCTC 1 cut(s) 51
Bsp1286I GDGCHC 1 cut(s) 81
Bsp143I GATC 7 cut(s) 23, 181, 260, 288, 438, 496, 828
Bsp1720I GCTNAGC 1 cut(s) 80
BspACI CCGC 1 cut(s) 138
BspCNI CTCAG 2 cut(s) 93, 673
BspLI GGNNCC 1 cut(s) 89
BspMAI CTGCAG 1 cut(s) 514
BspPI GGATC 2 cut(s) 268, 296
BspQI GCTCTTC 3 cut(s) 69, 153, 339
BspTNI GGTCTC 1 cut(s) 51
BsrDI GCAATG 1 cut(s) 384
BsrI ACTGG 1 cut(s) 590
BssMI GATC 7 cut(s) 23, 181, 260, 288, 438, 496, 828
Bst4CI ACNGT 2 cut(s) 61, 447
Bst6I CTCTTC 3 cut(s) 69, 153, 339
BstC8I GCNNGC 2 cut(s) 35, 86
BstDEI CTNAG 3 cut(s) 80, 347, 660
BstF5I GGATG 4 cut(s) 250, 262, 430, 694
BstHHI GCGC 1 cut(s) 679
BstKTI GATC 7 cut(s) 26, 184, 263, 291, 441, 499, 831
BstMAI GTCTC 2 cut(s) 51, 357
BstMBI GATC 7 cut(s) 23, 181, 260, 288, 438, 496, 828
BstMWI GCNNNNNNNGC 2 cut(s) 85, 499
BstNSI RCATGY 3 cut(s) 326, 553, 654
BstSFI CTRYAG 1 cut(s) 510
BstV1I GCAGC 1 cut(s) 496
BtsCI GGATG 4 cut(s) 250, 262, 430, 694
BtsI GCAGTG 1 cut(s) 519
BtsIMutI CAGTG 2 cut(s) 270, 519
Cac8I GCNNGC 2 cut(s) 35, 86
CfoI GCGC 1 cut(s) 679
Csp6I GTAC 1 cut(s) 13
CviAII CATG 8 cut(s) 17, 96, 241, 304, 323, 550, 651, 680
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 3 cut(s) 80, 347, 660
DpnI GATC 7 cut(s) 25, 183, 262, 290, 440, 498, 830
DpnII GATC 7 cut(s) 23, 181, 260, 288, 438, 496, 828
Eam1104I CTCTTC 3 cut(s) 69, 153, 339
EarI CTCTTC 3 cut(s) 69, 153, 339
Ecl136II GAGCTC 1 cut(s) 79
Eco24I GRGCYC 1 cut(s) 81
Eco31I GGTCTC 1 cut(s) 51
Eco53kI GAGCTC 1 cut(s) 79
Eco57I CTGAAG 3 cut(s) 320, 388, 750
EcoICRI GAGCTC 1 cut(s) 79
EcoRI GAATTC 1 cut(s) 697
EcoT22I ATGCAT 1 cut(s) 242
EcoT38I GRGCYC 1 cut(s) 81
FaeI CATG 8 cut(s) 20, 99, 244, 307, 326, 553, 654, 683
FalI AAGNNNNNCTT 2 cut(s) 768, 800
FatI CATG 8 cut(s) 16, 95, 240, 303, 322, 549, 650, 679
FauNDI CATATG 1 cut(s) 281
FbaI TGATCA 1 cut(s) 828
Fnu4HI GCNGC 2 cut(s) 6, 510
FokI GGATG 4 cut(s) 257, 269, 437, 701
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 2 cut(s) 6, 510
FspBI CTAG 4 cut(s) 275, 381, 399, 488
GlaI GCGC 1 cut(s) 678
GluI GCNGC 2 cut(s) 6, 510
HhaI GCGC 1 cut(s) 679
Hin1II CATG 8 cut(s) 20, 99, 244, 307, 326, 553, 654, 683
Hin6I GCGC 1 cut(s) 677
HinP1I GCGC 1 cut(s) 677
HindIII AAGCTT 1 cut(s) 269
HinfI GANTC 5 cut(s) 101, 128, 365, 642, 656
HphI GGTGA 1 cut(s) 41
Hpy188I TCNGA 4 cut(s) 23, 127, 730, 759
Hpy188III TCNNGA 6 cut(s) 155, 275, 466, 488, 794, 826
HpyAV CCTTC 4 cut(s) 48, 348, 352, 415
HpyCH4III ACNGT 2 cut(s) 61, 447
HpyCH4V TGCA 6 cut(s) 240, 512, 542, 634, 720, 752
HpyF10VI GCNNNNNNNGC 2 cut(s) 85, 499
HpyF3I CTNAG 3 cut(s) 80, 347, 660
Hsp92II CATG 8 cut(s) 20, 99, 244, 307, 326, 553, 654, 683
HspAI GCGC 1 cut(s) 677
Ksp22I TGATCA 1 cut(s) 828
Kzo9I GATC 7 cut(s) 23, 181, 260, 288, 438, 496, 828
LguI GCTCTTC 3 cut(s) 69, 153, 339
LmnI GCTCC 1 cut(s) 93
LpnPI CCDG 4 cut(s) 70, 135, 603, 647
Lsp1109I GCAGC 1 cut(s) 496
LweI GCATC 4 cut(s) 206, 415, 511, 621
MaeI CTAG 4 cut(s) 275, 381, 399, 488
MaeIII GTNAC 1 cut(s) 306
MalI GATC 7 cut(s) 25, 183, 262, 290, 440, 498, 830
MboI GATC 7 cut(s) 23, 181, 260, 288, 438, 496, 828
MboII GAAGA 9 cut(s) 83, 86, 170, 176, 326, 430, 518, 550, 717
MhlI GDGCHC 1 cut(s) 81
MluCI AATT 6 cut(s) 105, 434, 697, 741, 747, 761
MlyI GAGTC 4 cut(s) 110, 122, 359, 651
MmeI TCCRAC 2 cut(s) 234, 666
MnlI CCTC 4 cut(s) 134, 578, 721, 760
Mph1103I ATGCAT 1 cut(s) 242
MseI TTAA 1 cut(s) 672
MwoI GCNNNNNNNGC 2 cut(s) 85, 499
NdeI CATATG 1 cut(s) 281
NdeII GATC 7 cut(s) 23, 181, 260, 288, 438, 496, 828
NlaIII CATG 8 cut(s) 20, 99, 244, 307, 326, 553, 654, 683
NlaIV GGNNCC 1 cut(s) 89
NsiI ATGCAT 1 cut(s) 242
NspI RCATGY 3 cut(s) 326, 553, 654
PciI ACATGT 2 cut(s) 322, 549
PciSI GCTCTTC 3 cut(s) 69, 153, 339
PfeI GAWTC 1 cut(s) 656
PkrI GCNGC 2 cut(s) 7, 511
PleI GAGTC 4 cut(s) 109, 122, 359, 650
PpsI GAGTC 4 cut(s) 109, 122, 359, 650
PscI ACATGT 2 cut(s) 322, 549
Psp124BI GAGCTC 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 89
PstI CTGCAG 1 cut(s) 514
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SacI GAGCTC 1 cut(s) 81
SapI GCTCTTC 3 cut(s) 69, 153, 339
SaqAI TTAA 1 cut(s) 672
SatI GCNGC 2 cut(s) 6, 510
Sau3AI GATC 7 cut(s) 23, 181, 260, 288, 438, 496, 828
SchI GAGTC 4 cut(s) 110, 122, 359, 651
SduI GDGCHC 1 cut(s) 81
SfaNI GCATC 4 cut(s) 206, 415, 511, 621
SfcI CTRYAG 1 cut(s) 510
SmlI CTYRAG 2 cut(s) 367, 794
SmoI CTYRAG 2 cut(s) 367, 794
Sse9I AATT 6 cut(s) 105, 434, 697, 741, 747, 761
SsiI CCGC 1 cut(s) 138
SspMI CTAG 4 cut(s) 275, 381, 399, 488
SstI GAGCTC 1 cut(s) 81
TaaI ACNGT 2 cut(s) 61, 447
TaqI TCGA 1 cut(s) 529
TasI AATT 6 cut(s) 105, 434, 697, 741, 747, 761
TfiI GAWTC 1 cut(s) 656
Tru1I TTAA 1 cut(s) 672
Tru9I TTAA 1 cut(s) 672
TscAI CASTG 2 cut(s) 270, 519
TseI GCWGC 2 cut(s) 5, 509
TspDTI ATGAA 3 cut(s) 99, 292, 431
TspRI CASTG 2 cut(s) 270, 519
XapI RAATTY 2 cut(s) 697, 741
XbaI TCTAGA 2 cut(s) 274, 487
XceI RCATGY 3 cut(s) 326, 553, 654
XspI CTAG 4 cut(s) 275, 381, 399, 488
Zsp2I ATGCAT 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.