MD15G1234800.v1.1

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0004261
Physical Location & Seq
Forward (+)
19284856 .. 19285737
882 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1234800.v1.1.491

Sequence Viewer

Length: 882 bp
ATGGCTGCCAAGTACAATGTAATCAGATCAATCAGCTTGCCCTCAAGGTCACACCCCACCACTATTAGAGTTGAAGAGGAGCTGAGCAAGCTCCAAGCATCTTCATCTTGTGCTTCAACTTCAAACTCAATCTGCAAATCTATATGTGGTCTAGAGGAGTTGTATGAGTGTGTGGATGATCTTTTACAGATGGCATCAACCCAACGGCTCCTTTCTCAACATCAACAGCAGAAATGCATGGATGATTTGTTGGATGGATCAGTGAAGCTCTTGGACATATGTGGTATCACAAGAGACACCATTTCAATAATCAAGGAACATGTTAGAGCTCTTCAATCTGCTCTTAGGAGGAGAAAAGGAGACTCAAGCCTTGAAGGCTGCATTGCCAATTACACTTGTTTCAGAAAGAAGATGAAGAAGGATGCCAAGAAATTGATCACATCTTTGAAGCGAGTAGATAACAAAATTGACGCATCACAACTTTTAGAGCAAGACCACCATCTCACCGCTGTGATTCGAGTTCTTAGAGAAGTTTGTGTTGAGAACATGTCTATCTTCCAATCACTCTTGGTCTTTTTAGCTGTTCCTGTTTCAAAGCCAAAGGTAAACAAGTGGTCTCTTGTATCAAAGTTCATACACAAGGGAGTGATAGCATGTGAAGATCAGAACGAAGACATTATTAGCCATGAGTTGGATGGTGTTGATGCTGCCCTCTACTCTCTATCCAAATCTTCTTCAGCTGATGTTGGGAAGGTGCAAAGTACACAAAAAAGATTGGAGGCTTTGGAAATCATCATTGAAGGCCTTGAGAATGGTTTGGACAGCGTTTTCAGGCGCTTGATTAAAACAAGAGCTTCTCTTTTGAACATAATCTCACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

294

Amino Acids

32.69

Weight (kDa)

8.62

Isoelectric Point (pI)

53.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 50 - 290 1.3e-86 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 691
AciI CCGC 1 cut(s) 507
AclWI GGATC 1 cut(s) 265
AcuI CTGAAG 1 cut(s) 720
AfaI GTAC 2 cut(s) 14, 763
AfiI CCNNNNNNNGG 1 cut(s) 691
AflIII ACRYGT 2 cut(s) 319, 546
AleI CACNNNNGTG 1 cut(s) 509
AluBI AGCT 8 cut(s) 36, 82, 91, 268, 329, 581, 740, 854
AluI AGCT 8 cut(s) 36, 82, 91, 268, 329, 581, 740, 854
Alw21I GWGCWC 1 cut(s) 331
Alw26I GTCTC 3 cut(s) 288, 354, 621
AlwI GGATC 1 cut(s) 265
AoxI GGCC 1 cut(s) 802
ApeKI GCWGC 3 cut(s) 5, 378, 707
AspLEI GCGC 1 cut(s) 837
AsuHPI GGTGA 1 cut(s) 496
BanII GRGCYC 1 cut(s) 331
BbsI GAAGAC 1 cut(s) 678
Bbv12I GWGCWC 1 cut(s) 331
BbvI GCAGC 2 cut(s) 365, 694
BccI CCATC 4 cut(s) 184, 248, 507, 689
BceAI ACGGC 1 cut(s) 221
BclI TGATCA 1 cut(s) 435
BcoDI GTCTC 3 cut(s) 288, 354, 621
BfaI CTAG 1 cut(s) 152
BfoI RGCGCY 1 cut(s) 838
BglI GCCNNNNNGGC 1 cut(s) 375
BisI GCNGC 3 cut(s) 6, 379, 708
BlpI GCTNAGC 1 cut(s) 83
BlsI GCNGC 3 cut(s) 7, 380, 709
BmiI GGNNCC 1 cut(s) 209
BmsI GCATC 5 cut(s) 107, 203, 412, 482, 694
BpiI GAAGAC 1 cut(s) 678
Bpu1102I GCTNAGC 1 cut(s) 83
BpuEI CTTGAG 3 cut(s) 28, 349, 827
BsaI GGTCTC 1 cut(s) 621
Bsc4I CCNNNNNNNGG 1 cut(s) 691
Bse3DI GCAATG 1 cut(s) 381
BseGI GGATG 5 cut(s) 181, 247, 259, 427, 700
BseLI CCNNNNNNNGG 1 cut(s) 691
BseMI GCAATG 1 cut(s) 381
BseMII CTCAG 1 cut(s) 74
BseRI GAGGAG 3 cut(s) 92, 170, 364
BseXI GCAGC 2 cut(s) 365, 694
BshFI GGCC 1 cut(s) 804
BsiHKAI GWGCWC 1 cut(s) 331
BslI CCNNNNNNNGG 1 cut(s) 691
BsmAI GTCTC 3 cut(s) 288, 354, 621
BsnI GGCC 1 cut(s) 804
Bso31I GGTCTC 1 cut(s) 621
Bsp1286I GDGCHC 1 cut(s) 331
Bsp143I GATC 5 cut(s) 26, 178, 257, 435, 661
Bsp1720I GCTNAGC 1 cut(s) 83
BspACI CCGC 1 cut(s) 507
BspANI GGCC 1 cut(s) 804
BspCNI CTCAG 1 cut(s) 75
BspLI GGNNCC 1 cut(s) 209
BspPI GGATC 1 cut(s) 265
BspQI GCTCTTC 1 cut(s) 336
BspTNI GGTCTC 1 cut(s) 621
BsrDI GCAATG 1 cut(s) 381
BssMI GATC 5 cut(s) 26, 178, 257, 435, 661
Bst6I CTCTTC 2 cut(s) 69, 336
BstC8I GCNNGC 2 cut(s) 38, 89
BstDEI CTNAG 3 cut(s) 83, 344, 524
BstF5I GGATG 5 cut(s) 181, 247, 259, 427, 700
BstH2I RGCGCY 1 cut(s) 838
BstHHI GCGC 1 cut(s) 837
BstKTI GATC 5 cut(s) 29, 181, 260, 438, 664
BstMAI GTCTC 3 cut(s) 288, 354, 621
BstMBI GATC 5 cut(s) 26, 178, 257, 435, 661
BstMWI GCNNNNNNNGC 2 cut(s) 88, 375
BstNSI RCATGY 3 cut(s) 323, 550, 657
BstV1I GCAGC 2 cut(s) 365, 694
BstV2I GAAGAC 1 cut(s) 678
BsuRI GGCC 1 cut(s) 804
BtsCI GGATG 5 cut(s) 181, 247, 259, 427, 700
BtsIMutI CAGTG 1 cut(s) 267
Cac8I GCNNGC 2 cut(s) 38, 89
CfoI GCGC 1 cut(s) 837
CseI GACGC 1 cut(s) 479
Csp6I GTAC 2 cut(s) 13, 762
CviAII CATG 5 cut(s) 238, 320, 547, 654, 686
CviQI GTAC 2 cut(s) 13, 762
DdeI CTNAG 3 cut(s) 83, 344, 524
DpnI GATC 5 cut(s) 28, 180, 259, 437, 663
DpnII GATC 5 cut(s) 26, 178, 257, 435, 661
Eam1104I CTCTTC 2 cut(s) 69, 336
EarI CTCTTC 2 cut(s) 69, 336
Ecl136II GAGCTC 1 cut(s) 329
Eco147I AGGCCT 1 cut(s) 804
Eco24I GRGCYC 1 cut(s) 331
Eco31I GGTCTC 1 cut(s) 621
Eco53kI GAGCTC 1 cut(s) 329
Eco57I CTGAAG 1 cut(s) 720
EcoICRI GAGCTC 1 cut(s) 329
EcoT22I ATGCAT 1 cut(s) 239
EcoT38I GRGCYC 1 cut(s) 331
FaeI CATG 5 cut(s) 241, 323, 550, 657, 689
FatI CATG 5 cut(s) 237, 319, 546, 653, 685
FauNDI CATATG 1 cut(s) 278
FbaI TGATCA 1 cut(s) 435
Fnu4HI GCNGC 3 cut(s) 6, 379, 708
FokI GGATG 5 cut(s) 188, 254, 266, 434, 707
FriOI GRGCYC 1 cut(s) 331
Fsp4HI GCNGC 3 cut(s) 6, 379, 708
FspBI CTAG 1 cut(s) 152
GlaI GCGC 1 cut(s) 836
GluI GCNGC 3 cut(s) 6, 379, 708
HaeII RGCGCY 1 cut(s) 838
HaeIII GGCC 1 cut(s) 804
HgaI GACGC 1 cut(s) 479
HhaI GCGC 1 cut(s) 837
Hin1II CATG 5 cut(s) 241, 323, 550, 657, 689
Hin6I GCGC 1 cut(s) 835
HinP1I GCGC 1 cut(s) 835
HinfI GANTC 2 cut(s) 362, 514
HphI GGTGA 1 cut(s) 496
Hpy166II GTNNAC 2 cut(s) 607, 764
Hpy188I TCNGA 3 cut(s) 26, 404, 666
Hpy188III TCNNGA 1 cut(s) 152
Hpy8I GTNNAC 2 cut(s) 607, 764
HpyAV CCTTC 4 cut(s) 368, 412, 745, 794
HpyCH4V TGCA 4 cut(s) 135, 237, 381, 757
HpyF10VI GCNNNNNNNGC 2 cut(s) 88, 375
HpyF3I CTNAG 3 cut(s) 83, 344, 524
Hsp92II CATG 5 cut(s) 241, 323, 550, 657, 689
HspAI GCGC 1 cut(s) 835
Ksp22I TGATCA 1 cut(s) 435
Kzo9I GATC 5 cut(s) 26, 178, 257, 435, 661
LguI GCTCTTC 1 cut(s) 336
LmnI GCTCC 3 cut(s) 79, 96, 213
LpnPI CCDG 2 cut(s) 600, 817
Lsp1109I GCAGC 2 cut(s) 365, 694
LweI GCATC 5 cut(s) 107, 203, 412, 482, 694
MaeI CTAG 1 cut(s) 152
MaeIII GTNAC 1 cut(s) 48
MalI GATC 5 cut(s) 28, 180, 259, 437, 663
MboI GATC 5 cut(s) 26, 178, 257, 435, 661
MhlI GDGCHC 1 cut(s) 331
MluCI AATT 3 cut(s) 388, 431, 465
MlyI GAGTC 1 cut(s) 356
MmeI TCCRAC 2 cut(s) 231, 672
MnlI CCTC 6 cut(s) 52, 70, 148, 342, 722, 772
Mph1103I ATGCAT 1 cut(s) 239
MseI TTAA 1 cut(s) 843
MslI CAYNNNNRTG 1 cut(s) 509
MspA1I CMGCKG 2 cut(s) 509, 740
MwoI GCNNNNNNNGC 2 cut(s) 88, 375
NdeI CATATG 1 cut(s) 278
NdeII GATC 5 cut(s) 26, 178, 257, 435, 661
NlaIII CATG 5 cut(s) 241, 323, 550, 657, 689
NlaIV GGNNCC 1 cut(s) 209
NmuCI GTSAC 1 cut(s) 48
NsiI ATGCAT 1 cut(s) 239
NspI RCATGY 3 cut(s) 323, 550, 657
OliI CACNNNNGTG 1 cut(s) 509
PceI AGGCCT 1 cut(s) 804
PciI ACATGT 2 cut(s) 319, 546
PciSI GCTCTTC 1 cut(s) 336
PfeI GAWTC 1 cut(s) 514
PflMI CCANNNNNTGG 1 cut(s) 691
PkrI GCNGC 3 cut(s) 7, 380, 709
PleI GAGTC 1 cut(s) 356
PpsI GAGTC 1 cut(s) 356
PscI ACATGT 2 cut(s) 319, 546
Psp124BI GAGCTC 1 cut(s) 331
PspN4I GGNNCC 1 cut(s) 209
PvuII CAGCTG 1 cut(s) 740
RsaI GTAC 2 cut(s) 14, 763
RsaNI GTAC 2 cut(s) 13, 762
RseI CAYNNNNRTG 1 cut(s) 509
SacI GAGCTC 1 cut(s) 331
SapI GCTCTTC 1 cut(s) 336
SaqAI TTAA 1 cut(s) 843
SatI GCNGC 3 cut(s) 6, 379, 708
Sau3AI GATC 5 cut(s) 26, 178, 257, 435, 661
SchI GAGTC 1 cut(s) 356
SduI GDGCHC 1 cut(s) 331
SfaNI GCATC 5 cut(s) 107, 203, 412, 482, 694
SmiMI CAYNNNNRTG 1 cut(s) 509
SmlI CTYRAG 3 cut(s) 43, 364, 806
SmoI CTYRAG 3 cut(s) 43, 364, 806
Sse9I AATT 3 cut(s) 388, 431, 465
SseBI AGGCCT 1 cut(s) 804
SsiI CCGC 1 cut(s) 507
SspMI CTAG 1 cut(s) 152
SstI GAGCTC 1 cut(s) 331
StuI AGGCCT 1 cut(s) 804
TaqI TCGA 1 cut(s) 517
TasI AATT 3 cut(s) 388, 431, 465
TatI WGTACW 2 cut(s) 12, 761
TfiI GAWTC 1 cut(s) 514
Tru1I TTAA 1 cut(s) 843
Tru9I TTAA 1 cut(s) 843
TscAI CASTG 1 cut(s) 267
TseFI GTSAC 1 cut(s) 48
TseI GCWGC 3 cut(s) 5, 378, 707
Tsp45I GTSAC 1 cut(s) 48
TspDTI ATGAA 3 cut(s) 93, 428, 622
TspRI CASTG 1 cut(s) 267
Van91I CCANNNNNTGG 1 cut(s) 691
XbaI TCTAGA 1 cut(s) 151
XceI RCATGY 3 cut(s) 323, 550, 657
XcmI CCANNNNNNNNNTGG 1 cut(s) 692
XspI CTAG 1 cut(s) 152
Zsp2I ATGCAT 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.