Rroxscaffold_2G00144520

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0004261
Physical Location & Seq
Forward (+)
82413057 .. 82413833
777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00144520.1

Sequence Viewer

Length: 777 bp
ATGGGAGTCAATTTCATCTGCTTCAACATCAGACTCAATCTGCGCGGAGGTCTATCTGGTCTTGAAGAGCTGTATGATTGTGTTGATGATCTTCTCCAAATGGCATCAACCCAACAGCTACTCTCTCAACACCAACAAGAAAAATGCATGGACGAGTTGTTGGATGGATCGGTGAAGCTTCTAGACATATGTGGGATCACAAGGGATTTCATGTTACAAGTCAAAGAACATGTCTTTGCTCTTCAGTCTGCTCTTAGGAGAAGAAAGGGAGACTCAAGCATTGAAACAAGCATTGCCAACTACACTAGCTTCAGCAAGAAAATGAAGAAGGATGCCAAGAAATTGATCTCACATTTGAAACAAGCAGACATCAAGATTGAGTCATCACAACCTCTAGAGCAAGATCAGCATCTCGCCGCAGTGATTAGGGTTCTTCGACAAGTTTGTGCAAAGAACATGTCCATCTTCCAATCCCTCTTGGTGTTCTTGGCTGTTCCAGTTTCCAAGTCAAACAAGTGGTCTTTGGTATCAAAGTTGATGCACAAAGGAGTCGTAGCATGTGAATCTCAGGCAGACATTAAAGGGCATGAGTTGGATGGTGTGAATTCTGCTCTATCCTCACTATGCAAATCTTCTGAAGTTGAGAAGATTCAAATTGCACATCAGAAATTGGAGGCTTTGGAAGTCTTCATTGAAGGTCTTGAGAGTGGTTTGGAAAGCGTATTTAGGCGCTTGATCAAAACAAGAGCTTCTCTATTGAACATAATCTCACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

258

Amino Acids

28.85

Weight (kDa)

8.42

Isoelectric Point (pI)

56.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 17 - 255 1.3e-88 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 45
AciI CCGC 2 cut(s) 45, 417
AclWI GGATC 2 cut(s) 175, 203
AcsI RAATTY 1 cut(s) 604
AcuI CTGAAG 3 cut(s) 227, 295, 657
AflIII ACRYGT 2 cut(s) 229, 456
AgsI TTSAA 7 cut(s) 25, 65, 284, 358, 653, 695, 760
AluBI AGCT 5 cut(s) 70, 118, 178, 309, 749
AluI AGCT 5 cut(s) 70, 118, 178, 309, 749
Alw26I GTCTC 1 cut(s) 264
AlwI GGATC 2 cut(s) 175, 203
ApoI RAATTY 1 cut(s) 604
ArsI GACNNNNNNTTYG 6 cut(s) 216, 248, 443, 475, 503, 535
AspLEI GCGC 2 cut(s) 45, 732
AsuHPI GGTGA 1 cut(s) 184
BbsI GAAGAC 1 cut(s) 679
BccI CCATC 3 cut(s) 158, 470, 590
BclI TGATCA 1 cut(s) 735
BcoDI GTCTC 1 cut(s) 264
BfaI CTAG 3 cut(s) 182, 306, 395
BfoI RGCGCY 1 cut(s) 733
BisI GCNGC 1 cut(s) 417
BlsI GCNGC 1 cut(s) 418
BmsI GCATC 4 cut(s) 113, 322, 418, 528
BpiI GAAGAC 1 cut(s) 679
BpuEI CTTGAG 2 cut(s) 259, 722
BsaBI GATNNNNATC 1 cut(s) 408
Bse1I ACTGG 1 cut(s) 497
Bse3DI GCAATG 1 cut(s) 291
Bse8I GATNNNNATC 1 cut(s) 408
BseGI GGATG 3 cut(s) 169, 337, 601
BseJI GATNNNNATC 1 cut(s) 408
BseMI GCAATG 1 cut(s) 291
BseMII CTCAG 1 cut(s) 581
BseNI ACTGG 1 cut(s) 497
Bsh1236I CGCG 1 cut(s) 45
BsmAI GTCTC 1 cut(s) 264
Bsp143I GATC 6 cut(s) 88, 167, 195, 345, 403, 735
BspACI CCGC 2 cut(s) 45, 417
BspCNI CTCAG 1 cut(s) 580
BspFNI CGCG 1 cut(s) 45
BspPI GGATC 2 cut(s) 175, 203
BspQI GCTCTTC 2 cut(s) 60, 246
BsrDI GCAATG 1 cut(s) 291
BsrI ACTGG 1 cut(s) 497
BssMI GATC 6 cut(s) 88, 167, 195, 345, 403, 735
Bst6I CTCTTC 2 cut(s) 60, 246
BstDEI CTNAG 2 cut(s) 254, 567
BstF5I GGATG 3 cut(s) 169, 337, 601
BstFNI CGCG 1 cut(s) 45
BstH2I RGCGCY 1 cut(s) 733
BstHHI GCGC 2 cut(s) 45, 732
BstKTI GATC 6 cut(s) 91, 170, 198, 348, 406, 738
BstMAI GTCTC 1 cut(s) 264
BstMBI GATC 6 cut(s) 88, 167, 195, 345, 403, 735
BstMWI GCNNNNNNNGC 1 cut(s) 406
BstNSI RCATGY 3 cut(s) 233, 460, 561
BstUI CGCG 1 cut(s) 45
BstV2I GAAGAC 1 cut(s) 679
BtsCI GGATG 3 cut(s) 169, 337, 601
BtsI GCAGTG 1 cut(s) 426
BtsIMutI CAGTG 1 cut(s) 426
CfoI GCGC 2 cut(s) 45, 732
CviAII CATG 6 cut(s) 148, 211, 230, 457, 558, 587
CviJI RGCY 7 cut(s) 70, 118, 178, 309, 491, 677, 749
CviKI_1 RGCY 7 cut(s) 70, 118, 178, 309, 491, 677, 749
DdeI CTNAG 2 cut(s) 254, 567
DpnI GATC 6 cut(s) 90, 169, 197, 347, 405, 737
DpnII GATC 6 cut(s) 88, 167, 195, 345, 403, 735
Eam1104I CTCTTC 2 cut(s) 60, 246
EarI CTCTTC 2 cut(s) 60, 246
Eco57I CTGAAG 3 cut(s) 227, 295, 657
EcoRI GAATTC 1 cut(s) 604
EcoT22I ATGCAT 1 cut(s) 149
FaeI CATG 6 cut(s) 151, 214, 233, 460, 561, 590
FatI CATG 6 cut(s) 147, 210, 229, 456, 557, 586
FauNDI CATATG 1 cut(s) 188
FbaI TGATCA 1 cut(s) 735
Fnu4HI GCNGC 1 cut(s) 417
FokI GGATG 3 cut(s) 176, 344, 608
Fsp4HI GCNGC 1 cut(s) 417
FspBI CTAG 3 cut(s) 182, 306, 395
GlaI GCGC 2 cut(s) 44, 731
GluI GCNGC 1 cut(s) 417
HaeII RGCGCY 1 cut(s) 733
HhaI GCGC 2 cut(s) 45, 732
Hin1II CATG 6 cut(s) 151, 214, 233, 460, 561, 590
Hin6I GCGC 2 cut(s) 43, 730
HinP1I GCGC 2 cut(s) 43, 730
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 7 cut(s) 6, 33, 272, 380, 549, 563, 649
HphI GGTGA 1 cut(s) 184
Hpy188I TCNGA 3 cut(s) 32, 637, 666
Hpy188III TCNNGA 5 cut(s) 62, 182, 373, 395, 701
HpyAV CCTTC 2 cut(s) 322, 689
HpyCH4V TGCA 5 cut(s) 147, 449, 541, 627, 659
HpyF10VI GCNNNNNNNGC 1 cut(s) 406
HpyF3I CTNAG 2 cut(s) 254, 567
Hsp92II CATG 6 cut(s) 151, 214, 233, 460, 561, 590
HspAI GCGC 2 cut(s) 43, 730
Ksp22I TGATCA 1 cut(s) 735
Kzo9I GATC 6 cut(s) 88, 167, 195, 345, 403, 735
LguI GCTCTTC 2 cut(s) 60, 246
LpnPI CCDG 3 cut(s) 42, 510, 554
LweI GCATC 4 cut(s) 113, 322, 418, 528
MaeI CTAG 3 cut(s) 182, 306, 395
MaeIII GTNAC 1 cut(s) 213
MalI GATC 6 cut(s) 90, 169, 197, 347, 405, 737
MboI GATC 6 cut(s) 88, 167, 195, 345, 403, 735
MluCI AATT 5 cut(s) 10, 341, 604, 654, 668
MlyI GAGTC 5 cut(s) 15, 27, 266, 389, 558
MmeI TCCRAC 2 cut(s) 141, 573
MnlI CCTC 5 cut(s) 41, 402, 485, 628, 667
Mph1103I ATGCAT 1 cut(s) 149
MseI TTAA 1 cut(s) 579
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 1 cut(s) 406
NdeI CATATG 1 cut(s) 188
NdeII GATC 6 cut(s) 88, 167, 195, 345, 403, 735
NlaIII CATG 6 cut(s) 151, 214, 233, 460, 561, 590
NsiI ATGCAT 1 cut(s) 149
NspI RCATGY 3 cut(s) 233, 460, 561
PciI ACATGT 2 cut(s) 229, 456
PciSI GCTCTTC 2 cut(s) 60, 246
PfeI GAWTC 2 cut(s) 563, 649
PkrI GCNGC 1 cut(s) 418
PleI GAGTC 5 cut(s) 14, 27, 266, 388, 557
PpsI GAGTC 5 cut(s) 14, 27, 266, 388, 557
PscI ACATGT 2 cut(s) 229, 456
SapI GCTCTTC 2 cut(s) 60, 246
SaqAI TTAA 1 cut(s) 579
SatI GCNGC 1 cut(s) 417
Sau3AI GATC 6 cut(s) 88, 167, 195, 345, 403, 735
SchI GAGTC 5 cut(s) 15, 27, 266, 389, 558
SetI ASST 8 cut(s) 52, 72, 120, 180, 311, 394, 700, 751
SfaNI GCATC 4 cut(s) 113, 322, 418, 528
SmlI CTYRAG 2 cut(s) 274, 701
SmoI CTYRAG 2 cut(s) 274, 701
Sse9I AATT 5 cut(s) 10, 341, 604, 654, 668
SsiI CCGC 2 cut(s) 45, 417
SspMI CTAG 3 cut(s) 182, 306, 395
TaqI TCGA 1 cut(s) 436
TasI AATT 5 cut(s) 10, 341, 604, 654, 668
TauI GCSGC 1 cut(s) 419
TfiI GAWTC 2 cut(s) 563, 649
Tru1I TTAA 1 cut(s) 579
Tru9I TTAA 1 cut(s) 579
TscAI CASTG 1 cut(s) 426
TspDTI ATGAA 4 cut(s) 4, 199, 338, 679
TspRI CASTG 1 cut(s) 426
XapI RAATTY 1 cut(s) 604
XbaI TCTAGA 2 cut(s) 181, 394
XceI RCATGY 3 cut(s) 233, 460, 561
XspI CTAG 3 cut(s) 182, 306, 395
Zsp2I ATGCAT 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.