Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8105842.1

Orthogroup ID

OG0004261

Physical Location & Seq

Genomic Coordinates Forward (+)

172 .. 606

Gene Structure 435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8105842.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

atggctgccaagtaccctgtcagatcaatcagcttgccctcaaggtctcacccaacaactgttagagttgaagaagagctcagtaggctccaatcatgggagtcaacttcatctgcttcaacatcagactcaatctgtagaggtctgtctggtcttgaagagttgtatgattgtgttgatgatcttctccaaatgacatcaacccaacagctactctctcaacaccaacaagagaaatgcatggatgagttgttggatggatcagtgaagcttctagacatatgtgggatcacaagggatttcatgttacaaatcaaacaacatgtccttgctcttcaatctgctcttaggagaagaaagggagactcgagcattgaaactagcattgccaactacactagcttcagcaagaaaatgaagaaggatgccaagaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF241

Protein Analysis

145

Amino Acids

16.32

Weight (kDa)

7.67

Isoelectric Point (pI)

71.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17680 AT4G35690 AT4G35710
fragaria_vesca	FvH4_1g10690 FvH4_1g10710
malus_domestica	MD02G1120800.v1.1 MD02G1121000.v1.1 MD15G1234800.v1.1 MD15G1234900.v1.1
prunus_persica	Prupe.7G178200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0097861 RchiOBHm_Chr2g0097871
rosa_laevigata	RLG00000016741
rosa_multiflora	Rmu_co8105842.1_g000001 Rmu_sc0000974.1_g000030 Rmu_sc0008442.1_g000014 Rmu_sc0008442.1_g000017 Rmu_sc0020316.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144480 Rroxscaffold_2G00144520
rosa_rugosa	Rorug02G0068800 Rorug02G0068900
rosa_samantha	Rh2AG115400 Rh2AG115600 Rh2BG118400 Rh2BG118500 Rh2CG119900 Rh2CG120000 Rh2DG119700 Rh2DG119800
rosa_wichuraiana	Rw2G009020 Rw2G009040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	268, 296
AcuI	CTGAAG	1 cut(s)	388
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	1 cut(s)	97
AflIII	ACRYGT	1 cut(s)	322
AgsI	TTSAA	5 cut(s)	71, 120, 158, 338, 377
AluBI	AGCT	5 cut(s)	33, 79, 211, 271, 402
AluI	AGCT	5 cut(s)	33, 79, 211, 271, 402
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	2 cut(s)	51, 357
AlwI	GGATC	2 cut(s)	268, 296
Ama87I	CYCGRG	1 cut(s)	367
ApeKI	GCWGC	1 cut(s)	5
ArsI	GACNNNNNNTTYG	2 cut(s)	309, 341
AsuHPI	GGTGA	1 cut(s)	41
AvaI	CYCGRG	1 cut(s)	367
BanII	GRGCYC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	81
BccI	CCATC	1 cut(s)	251
BcoDI	GTCTC	2 cut(s)	51, 357
BfaI	CTAG	3 cut(s)	275, 381, 399
BfmI	CTRYAG	1 cut(s)	136
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BmeT110I	CYCGRG	1 cut(s)	367
BmiI	GGNNCC	1 cut(s)	89
BmsI	GCATC	1 cut(s)	415
BpuEI	CTTGAG	1 cut(s)	25
BsaI	GGTCTC	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse3DI	GCAATG	1 cut(s)	384
BseGI	GGATG	3 cut(s)	250, 262, 430
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	81
BsiHKCI	CYCGRG	1 cut(s)	367
BslI	CCNNNNNNNGG	1 cut(s)	97
BsmAI	GTCTC	2 cut(s)	51, 357
Bso31I	GGTCTC	1 cut(s)	51
BsoBI	CYCGRG	1 cut(s)	367
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	4 cut(s)	23, 181, 260, 288
BspCNI	CTCAG	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	89
BspPI	GGATC	2 cut(s)	268, 296
BspQI	GCTCTTC	2 cut(s)	69, 339
BspTNI	GGTCTC	1 cut(s)	51
BsrDI	GCAATG	1 cut(s)	384
BssMI	GATC	4 cut(s)	23, 181, 260, 288
Bst4CI	ACNGT	1 cut(s)	61
Bst6I	CTCTTC	3 cut(s)	69, 153, 339
BstC8I	GCNNGC	1 cut(s)	35
BstDEI	CTNAG	2 cut(s)	80, 347
BstF5I	GGATG	3 cut(s)	250, 262, 430
BstKTI	GATC	4 cut(s)	26, 184, 263, 291
BstMAI	GTCTC	2 cut(s)	51, 357
BstMBI	GATC	4 cut(s)	23, 181, 260, 288
BstMWI	GCNNNNNNNGC	1 cut(s)	85
BstNSI	RCATGY	1 cut(s)	326
BstSFI	CTRYAG	1 cut(s)	136
BtsCI	GGATG	3 cut(s)	250, 262, 430
BtsIMutI	CAGTG	1 cut(s)	270
Cac8I	GCNNGC	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	4 cut(s)	96, 241, 304, 323
CviJI	RGCY	7 cut(s)	5, 33, 79, 88, 211, 271, 402
CviKI_1	RGCY	7 cut(s)	5, 33, 79, 88, 211, 271, 402
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	2 cut(s)	80, 347
DpnI	GATC	4 cut(s)	25, 183, 262, 290
DpnII	GATC	4 cut(s)	23, 181, 260, 288
Eam1104I	CTCTTC	3 cut(s)	69, 153, 339
EarI	CTCTTC	3 cut(s)	69, 153, 339
Ecl136II	GAGCTC	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	81
Eco31I	GGTCTC	1 cut(s)	51
Eco53kI	GAGCTC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	388
Eco88I	CYCGRG	1 cut(s)	367
EcoICRI	GAGCTC	1 cut(s)	79
EcoT22I	ATGCAT	1 cut(s)	242
EcoT38I	GRGCYC	1 cut(s)	81
FaeI	CATG	4 cut(s)	99, 244, 307, 326
FaiI	YATR	7 cut(s)	97, 168, 242, 281, 283, 305, 324
FatI	CATG	4 cut(s)	95, 240, 303, 322
FauNDI	CATATG	1 cut(s)	281
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	2 cut(s)	257, 269
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	3 cut(s)	275, 381, 399
GluI	GCNGC	1 cut(s)	6
Hin1II	CATG	4 cut(s)	99, 244, 307, 326
HincII	GTYRAC	1 cut(s)	105
HindII	GTYRAC	1 cut(s)	105
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	3 cut(s)	101, 128, 365
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	1 cut(s)	105
Hpy188I	TCNGA	2 cut(s)	23, 127
Hpy188III	TCNNGA	2 cut(s)	155, 275
Hpy8I	GTNNAC	1 cut(s)	105
HpyAV	CCTTC	1 cut(s)	415
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4V	TGCA	1 cut(s)	240
HpyF10VI	GCNNNNNNNGC	1 cut(s)	85
HpyF3I	CTNAG	2 cut(s)	80, 347
Hsp92II	CATG	4 cut(s)	99, 244, 307, 326
Kzo9I	GATC	4 cut(s)	23, 181, 260, 288
LguI	GCTCTTC	2 cut(s)	69, 339
LmnI	GCTCC	1 cut(s)	93
LpnPI	CCDG	2 cut(s)	30, 135
LweI	GCATC	1 cut(s)	415
MaeI	CTAG	3 cut(s)	275, 381, 399
MaeIII	GTNAC	1 cut(s)	306
MalI	GATC	4 cut(s)	25, 183, 262, 290
MboI	GATC	4 cut(s)	23, 181, 260, 288
MboII	GAAGA	7 cut(s)	83, 86, 170, 176, 326, 366, 430
MhlI	GDGCHC	1 cut(s)	81
MlyI	GAGTC	3 cut(s)	110, 122, 359
MmeI	TCCRAC	1 cut(s)	234
MnlI	CCTC	2 cut(s)	49, 134
Mph1103I	ATGCAT	1 cut(s)	242
MwoI	GCNNNNNNNGC	1 cut(s)	85
NdeI	CATATG	1 cut(s)	281
NdeII	GATC	4 cut(s)	23, 181, 260, 288
NlaIII	CATG	4 cut(s)	99, 244, 307, 326
NlaIV	GGNNCC	1 cut(s)	89
NsiI	ATGCAT	1 cut(s)	242
NspI	RCATGY	1 cut(s)	326
PaeR7I	CTCGAG	1 cut(s)	367
PciI	ACATGT	1 cut(s)	322
PciSI	GCTCTTC	2 cut(s)	69, 339
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	3 cut(s)	109, 122, 359
PpsI	GAGTC	3 cut(s)	109, 122, 359
PscI	ACATGT	1 cut(s)	322
Psp124BI	GAGCTC	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	89
PspXI	VCTCGAGB	1 cut(s)	367
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SacI	GAGCTC	1 cut(s)	81
SapI	GCTCTTC	2 cut(s)	69, 339
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	4 cut(s)	23, 181, 260, 288
SchI	GAGTC	3 cut(s)	110, 122, 359
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	7 cut(s)	35, 47, 81, 145, 213, 273, 404
SfaNI	GCATC	1 cut(s)	415
SfcI	CTRYAG	1 cut(s)	136
Sfr274I	CTCGAG	1 cut(s)	367
SlaI	CTCGAG	1 cut(s)	367
SmlI	CTYRAG	2 cut(s)	40, 367
SmoI	CTYRAG	2 cut(s)	40, 367
SspMI	CTAG	3 cut(s)	275, 381, 399
SstI	GAGCTC	1 cut(s)	81
TaaI	ACNGT	1 cut(s)	61
TaqI	TCGA	1 cut(s)	368
TscAI	CASTG	1 cut(s)	270
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	3 cut(s)	99, 292, 431
TspRI	CASTG	1 cut(s)	270
XbaI	TCTAGA	1 cut(s)	274
XceI	RCATGY	1 cut(s)	326
XhoI	CTCGAG	1 cut(s)	367
XspI	CTAG	3 cut(s)	275, 381, 399
Zsp2I	ATGCAT	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.