Rroxscaffold_2G00144480

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0004261
Physical Location & Seq
Reverse (-)
82368887 .. 82369756
870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00144480.1

Sequence Viewer

Length: 870 bp
ATGGCTACCAAGTACCCTGTCAGATCAATCAGCTTGCCCTCAAGGTCTCACCCAACAACTGTTAGAGTTGAAGAAGAGCTCAGTAGGCTCCAATCATGGGAGTCAACTTCATCTGCTTCAACATCAGACTCAATCTGTAGAGGTCTATCTGGTCTTGAAGAGTTATATGATTGTGTTGATGATCTTCTCCAAATGACATCAACCCAACAGCTACTCTCTCAACACCAACAAGAGAAATGCATGGATGAGTTGTTGGATGGATCAGTGAAGCTTCTAGACATATGTGGGATCACAAGGGATTTCATGTTACAAATCAAAGAACATGTCTTCGCTCTTCAATCTGCTCTTAGGAGAAGAAAGGGAGACTCAAGCATTGAAACTAGCATTGCCAACTACACTAGCTTCAGCAAGAAAATGAAGAAGGATACCAAGAAATTGATCTCACAGTTGAAACAAGCAGACAATAAAATTGGATTATCACAACCTCTACAGCAAGATCAGCATCTCGCCGCGGTGATTAGGGTTCTCCGACAAGTTTGTGCAAAGAACATGTCCATCTTCCAATCTCTCTTGGTGTTCTTGGCTGTTCCAGTTTCCAAGTCAAACAAGTGGTCTTTGGTGTCAAAGTTGATGCACAAAGGAGTCGTAGCATGTGAATCTCAAGCAGACATTAATGGGCATGAGCTGGATGGTGTGGATTCTGCTCTATCCTCACTATGCAAATCTGCTGAAGTTGAGAAGATTCAAAGTGCACATAAGAAATTGGAGGCTTTGGAAGCCTGCATTGAAGGCCTTGAGAGTGGTTTGGAGAGTGTATTTAAGCGCTTGATCAAAACAAGAGCTTCTCTTCTGAACATAATCTCACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

289

Amino Acids

32.1

Weight (kDa)

8.35

Isoelectric Point (pI)

63.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 48 - 286 6.3e-91 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 512
AciI CCGC 2 cut(s) 510, 512
AclWI GGATC 2 cut(s) 268, 296
AcuI CTGAAG 2 cut(s) 388, 750
AfaI GTAC 1 cut(s) 14
AfeI AGCGCT 1 cut(s) 824
AfiI CCNNNNNNNGG 1 cut(s) 97
AflIII ACRYGT 2 cut(s) 322, 549
AgsI TTSAA 8 cut(s) 71, 120, 158, 338, 377, 451, 746, 788
AluBI AGCT 7 cut(s) 33, 79, 211, 271, 402, 685, 842
AluI AGCT 7 cut(s) 33, 79, 211, 271, 402, 685, 842
Alw21I GWGCWC 2 cut(s) 81, 754
Alw26I GTCTC 2 cut(s) 51, 357
Alw44I GTGCAC 1 cut(s) 750
AlwI GGATC 2 cut(s) 268, 296
Aor51HI AGCGCT 1 cut(s) 824
AoxI GGCC 1 cut(s) 790
ApaLI GTGCAC 1 cut(s) 750
ArsI GACNNNNNNTTYG 6 cut(s) 309, 341, 536, 568, 596, 628
AseI ATTAAT 1 cut(s) 672
AspLEI GCGC 1 cut(s) 825
AsuHPI GGTGA 2 cut(s) 41, 526
BaeGI GKGCMC 1 cut(s) 754
BanII GRGCYC 1 cut(s) 81
BbsI GAAGAC 1 cut(s) 319
Bbv12I GWGCWC 2 cut(s) 81, 754
BccI CCATC 3 cut(s) 251, 563, 683
BciVI GTATCC 1 cut(s) 418
BclI TGATCA 1 cut(s) 828
BcoDI GTCTC 2 cut(s) 51, 357
BfaI CTAG 3 cut(s) 275, 381, 399
BfmI CTRYAG 2 cut(s) 136, 488
BfoI RGCGCY 1 cut(s) 826
BfuI GTATCC 1 cut(s) 418
BisI GCNGC 1 cut(s) 510
BlsI GCNGC 1 cut(s) 511
BmiI GGNNCC 1 cut(s) 89
BmsI GCATC 2 cut(s) 511, 621
BpiI GAAGAC 1 cut(s) 319
BpuEI CTTGAG 4 cut(s) 25, 352, 645, 815
BsaBI GATNNNNATC 1 cut(s) 501
BsaI GGTCTC 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 510
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 590
Bse3DI GCAATG 1 cut(s) 384
Bse8I GATNNNNATC 1 cut(s) 501
BseDI CCNNGG 1 cut(s) 510
BseGI GGATG 3 cut(s) 250, 262, 694
BseJI GATNNNNATC 1 cut(s) 501
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMI GCAATG 1 cut(s) 384
BseMII CTCAG 1 cut(s) 94
BseNI ACTGG 1 cut(s) 590
BseSI GKGCMC 1 cut(s) 754
Bsh1236I CGCG 1 cut(s) 512
BshFI GGCC 1 cut(s) 792
BsiHKAI GWGCWC 2 cut(s) 81, 754
BslI CCNNNNNNNGG 1 cut(s) 97
BsmAI GTCTC 2 cut(s) 51, 357
BsnI GGCC 1 cut(s) 792
Bso31I GGTCTC 1 cut(s) 51
Bsp1286I GDGCHC 2 cut(s) 81, 754
Bsp143I GATC 7 cut(s) 23, 181, 260, 288, 438, 496, 828
BspACI CCGC 2 cut(s) 510, 512
BspANI GGCC 1 cut(s) 792
BspCNI CTCAG 1 cut(s) 93
BspFNI CGCG 1 cut(s) 512
BspLI GGNNCC 1 cut(s) 89
BspPI GGATC 2 cut(s) 268, 296
BspQI GCTCTTC 2 cut(s) 69, 339
BspTNI GGTCTC 1 cut(s) 51
BsrDI GCAATG 1 cut(s) 384
BsrI ACTGG 1 cut(s) 590
BssECI CCNNGG 1 cut(s) 510
BssMI GATC 7 cut(s) 23, 181, 260, 288, 438, 496, 828
Bst4CI ACNGT 2 cut(s) 61, 447
Bst6I CTCTTC 4 cut(s) 69, 153, 339, 852
BstC8I GCNNGC 2 cut(s) 35, 781
BstDEI CTNAG 2 cut(s) 80, 347
BstDSI CCRYGG 1 cut(s) 510
BstF5I GGATG 3 cut(s) 250, 262, 694
BstFNI CGCG 1 cut(s) 512
BstH2I RGCGCY 1 cut(s) 826
BstHHI GCGC 1 cut(s) 825
BstKTI GATC 7 cut(s) 26, 184, 263, 291, 441, 499, 831
BstMAI GTCTC 2 cut(s) 51, 357
BstMBI GATC 7 cut(s) 23, 181, 260, 288, 438, 496, 828
BstMWI GCNNNNNNNGC 4 cut(s) 85, 499, 776, 789
BstNSI RCATGY 3 cut(s) 326, 553, 654
BstSFI CTRYAG 2 cut(s) 136, 488
BstSLI GKGCMC 1 cut(s) 754
BstUI CGCG 1 cut(s) 512
BstV2I GAAGAC 1 cut(s) 319
BsuI GTATCC 1 cut(s) 418
BsuRI GGCC 1 cut(s) 792
BtgI CCRYGG 1 cut(s) 510
BtsCI GGATG 3 cut(s) 250, 262, 694
BtsIMutI CAGTG 1 cut(s) 270
Cac8I GCNNGC 2 cut(s) 35, 781
CfoI GCGC 1 cut(s) 825
Cfr42I CCGCGG 1 cut(s) 513
Csp6I GTAC 1 cut(s) 13
CviAII CATG 7 cut(s) 96, 241, 304, 323, 550, 651, 680
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 2 cut(s) 80, 347
DpnI GATC 7 cut(s) 25, 183, 262, 290, 440, 498, 830
DpnII GATC 7 cut(s) 23, 181, 260, 288, 438, 496, 828
Eam1104I CTCTTC 4 cut(s) 69, 153, 339, 852
EarI CTCTTC 4 cut(s) 69, 153, 339, 852
Ecl136II GAGCTC 1 cut(s) 79
Eco147I AGGCCT 1 cut(s) 792
Eco24I GRGCYC 1 cut(s) 81
Eco31I GGTCTC 1 cut(s) 51
Eco47III AGCGCT 1 cut(s) 824
Eco53kI GAGCTC 1 cut(s) 79
Eco57I CTGAAG 2 cut(s) 388, 750
EcoICRI GAGCTC 1 cut(s) 79
EcoT22I ATGCAT 1 cut(s) 242
EcoT38I GRGCYC 1 cut(s) 81
FaeI CATG 7 cut(s) 99, 244, 307, 326, 553, 654, 683
FatI CATG 7 cut(s) 95, 240, 303, 322, 549, 650, 679
FauNDI CATATG 1 cut(s) 281
FbaI TGATCA 1 cut(s) 828
Fnu4HI GCNGC 1 cut(s) 510
FokI GGATG 3 cut(s) 257, 269, 701
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 510
FspBI CTAG 3 cut(s) 275, 381, 399
GlaI GCGC 1 cut(s) 824
GluI GCNGC 1 cut(s) 510
HaeII RGCGCY 1 cut(s) 826
HaeIII GGCC 1 cut(s) 792
HhaI GCGC 1 cut(s) 825
Hin1II CATG 7 cut(s) 99, 244, 307, 326, 553, 654, 683
Hin6I GCGC 1 cut(s) 823
HinP1I GCGC 1 cut(s) 823
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HindIII AAGCTT 1 cut(s) 269
HinfI GANTC 7 cut(s) 101, 128, 365, 642, 656, 698, 742
HphI GGTGA 2 cut(s) 41, 526
Hpy166II GTNNAC 2 cut(s) 105, 752
Hpy188I TCNGA 4 cut(s) 23, 127, 530, 852
Hpy188III TCNNGA 2 cut(s) 155, 275
Hpy8I GTNNAC 2 cut(s) 105, 752
HpyAV CCTTC 2 cut(s) 415, 782
HpyCH4III ACNGT 2 cut(s) 61, 447
HpyCH4V TGCA 6 cut(s) 240, 542, 634, 720, 752, 783
HpyF10VI GCNNNNNNNGC 4 cut(s) 85, 499, 776, 789
HpyF3I CTNAG 2 cut(s) 80, 347
Hsp92II CATG 7 cut(s) 99, 244, 307, 326, 553, 654, 683
HspAI GCGC 1 cut(s) 823
Ksp22I TGATCA 1 cut(s) 828
KspI CCGCGG 1 cut(s) 513
Kzo9I GATC 7 cut(s) 23, 181, 260, 288, 438, 496, 828
LguI GCTCTTC 2 cut(s) 69, 339
LmnI GCTCC 1 cut(s) 93
LpnPI CCDG 5 cut(s) 30, 135, 603, 671, 793
LweI GCATC 2 cut(s) 511, 621
MaeI CTAG 3 cut(s) 275, 381, 399
MaeIII GTNAC 1 cut(s) 306
MalI GATC 7 cut(s) 25, 183, 262, 290, 440, 498, 830
MboI GATC 7 cut(s) 23, 181, 260, 288, 438, 496, 828
MhlI GDGCHC 2 cut(s) 81, 754
MluCI AATT 3 cut(s) 434, 468, 761
MlyI GAGTC 4 cut(s) 110, 122, 359, 651
MmeI TCCRAC 2 cut(s) 234, 553
MnlI CCTC 5 cut(s) 49, 134, 495, 721, 760
Mph1103I ATGCAT 1 cut(s) 242
MseI TTAA 2 cut(s) 672, 819
MspA1I CMGCKG 1 cut(s) 512
MvnI CGCG 1 cut(s) 512
MwoI GCNNNNNNNGC 4 cut(s) 85, 499, 776, 789
NdeI CATATG 1 cut(s) 281
NdeII GATC 7 cut(s) 23, 181, 260, 288, 438, 496, 828
NlaIII CATG 7 cut(s) 99, 244, 307, 326, 553, 654, 683
NlaIV GGNNCC 1 cut(s) 89
NsiI ATGCAT 1 cut(s) 242
NspI RCATGY 3 cut(s) 326, 553, 654
PceI AGGCCT 1 cut(s) 792
PciI ACATGT 2 cut(s) 322, 549
PciSI GCTCTTC 2 cut(s) 69, 339
PfeI GAWTC 3 cut(s) 656, 698, 742
PkrI GCNGC 1 cut(s) 511
PleI GAGTC 4 cut(s) 109, 122, 359, 650
PpsI GAGTC 4 cut(s) 109, 122, 359, 650
PscI ACATGT 2 cut(s) 322, 549
PshBI ATTAAT 1 cut(s) 672
Psp124BI GAGCTC 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 89
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SacI GAGCTC 1 cut(s) 81
SacII CCGCGG 1 cut(s) 513
SapI GCTCTTC 2 cut(s) 69, 339
SaqAI TTAA 2 cut(s) 672, 819
SatI GCNGC 1 cut(s) 510
Sau3AI GATC 7 cut(s) 23, 181, 260, 288, 438, 496, 828
SchI GAGTC 4 cut(s) 110, 122, 359, 651
SduI GDGCHC 2 cut(s) 81, 754
SfaNI GCATC 2 cut(s) 511, 621
SfcI CTRYAG 2 cut(s) 136, 488
Sfr303I CCGCGG 1 cut(s) 513
SgrBI CCGCGG 1 cut(s) 513
SmlI CTYRAG 4 cut(s) 40, 367, 660, 794
SmoI CTYRAG 4 cut(s) 40, 367, 660, 794
Sse9I AATT 3 cut(s) 434, 468, 761
SseBI AGGCCT 1 cut(s) 792
SsiI CCGC 2 cut(s) 510, 512
SspMI CTAG 3 cut(s) 275, 381, 399
SstI GAGCTC 1 cut(s) 81
StuI AGGCCT 1 cut(s) 792
TaaI ACNGT 2 cut(s) 61, 447
TasI AATT 3 cut(s) 434, 468, 761
TauI GCSGC 1 cut(s) 512
TfiI GAWTC 3 cut(s) 656, 698, 742
Tru1I TTAA 2 cut(s) 672, 819
Tru9I TTAA 2 cut(s) 672, 819
TscAI CASTG 1 cut(s) 270
TspDTI ATGAA 3 cut(s) 99, 292, 431
TspRI CASTG 1 cut(s) 270
VneI GTGCAC 1 cut(s) 750
VspI ATTAAT 1 cut(s) 672
XbaI TCTAGA 1 cut(s) 274
XceI RCATGY 3 cut(s) 326, 553, 654
XspI CTAG 3 cut(s) 275, 381, 399
Zsp2I ATGCAT 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.