MD02G1120800.v1.1

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0004261
Physical Location & Seq
Reverse (-)
9871045 .. 9871920
876 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1120800.v1.1.491

Sequence Viewer

Length: 876 bp
ATGGCTGCCAAGTACAAAGTCAGATCAATCAGCCTACCCTCAAGATCACACCCCACCACTCTTAGGGTTGAAGAAGAGCTGAGTAGGCTCCAAACATCTTCATCTTTTGCTTCAATCTGCAAAGATCTATGTGGACTAGAGGAGTTGTATGATTGTGTGGATGATCTTTTACAGATGGCATCAACCCAAAAACTCCTTTCTCATTACCAACAAGAGAAGTGTATGGATGAGTTGTTGGATGGATCACTGAGGCTCTTGGACATATGTGGCATCACAAGGGATGTCATGTCACAAATCAAGGAACATGTTAGAGACCTTCAATCTGCTCTTAGGAGGAGAAAGGGAGACTCAAGCATAGAAAGCAGCATTGCAAATTACAATTGTTTCAGAAAGAAGATGAAGAAGGATGCCAAGAAATTGATCACATCACTGAAGCAAGTAGACAACAAAGCATCACAGCATCTAGAGCAAGATCAGCATGCTTCCGCGGTGACTCGAGTTCTTAAAGAAGTGTTTGGTAAGAACATGTCTATCTTTCAATCCCTATTGGTCTTCCTAGTAGTTCCAGTTTCAAAGCCAAGGTCAAAGAAGTGGTCTTTGGTATCAAAGTTTATGCACAAGGGAGTGATAGCATGTGAAGATCAGAATAAGGATATTAATGGCCATGAGTTGGATGGTGTTGATGCTGCTCTCTACTCTCTATGCAAATCTTCATCAGCTCCTACAGAAGGTGCTAATGTTGAGAAGATTCAAAACGCACATAAAAAATTGAAGGCTTTGGAAGTCACCGTTGAAGGCCTTGAGAATGGTTTGGATAGCGTTTTTAGGCGCTTGATTAAAACAAGAGCTTTTCTTTTGAACATAATCTCACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

292

Amino Acids

32.74

Weight (kDa)

9.08

Isoelectric Point (pI)

58.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 43 - 288 2.7e-88 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 670
AccI GTMKAC 1 cut(s) 441
AccII CGCG 1 cut(s) 488
AciI CCGC 2 cut(s) 486, 488
AclWI GGATC 1 cut(s) 250
AcoI YGGCCR 1 cut(s) 661
AcuI CTGAAG 1 cut(s) 452
AfaI GTAC 1 cut(s) 14
AfiI CCNNNNNNNGG 3 cut(s) 63, 670, 728
AflIII ACRYGT 2 cut(s) 304, 525
AgsI TTSAA 9 cut(s) 71, 114, 320, 539, 573, 752, 772, 794, 859
AjuI GAANNNNNNNTTGG 2 cut(s) 581, 613
AluBI AGCT 3 cut(s) 79, 719, 848
AluI AGCT 3 cut(s) 79, 719, 848
Alw26I GTCTC 2 cut(s) 306, 339
AlwI GGATC 1 cut(s) 250
Ama87I CYCGRG 1 cut(s) 495
AoxI GGCC 2 cut(s) 661, 796
ApeKI GCWGC 3 cut(s) 5, 363, 686
ArsI GACNNNNNNTTYG 4 cut(s) 566, 578, 598, 610
AseI ATTAAT 1 cut(s) 657
AspLEI GCGC 1 cut(s) 831
AsuHPI GGTGA 2 cut(s) 502, 778
AvaI CYCGRG 1 cut(s) 495
BalI TGGCCA 1 cut(s) 663
BbsI GAAGAC 1 cut(s) 544
BbvI GCAGC 2 cut(s) 375, 673
BccI CCATC 3 cut(s) 169, 233, 668
BclI TGATCA 1 cut(s) 420
BcoDI GTCTC 2 cut(s) 306, 339
BfaI CTAG 3 cut(s) 137, 464, 557
BfmI CTRYAG 1 cut(s) 723
BfoI RGCGCY 1 cut(s) 832
BglII AGATCT 1 cut(s) 124
BisI GCNGC 3 cut(s) 6, 364, 687
BlsI GCNGC 3 cut(s) 7, 365, 688
BmeT110I CYCGRG 1 cut(s) 495
BmiI GGNNCC 1 cut(s) 89
BmsI GCATC 6 cut(s) 188, 279, 397, 461, 469, 673
BpiI GAAGAC 1 cut(s) 544
BpuEI CTTGAG 3 cut(s) 25, 334, 821
BsaI GGTCTC 1 cut(s) 306
BsaJI CCNNGG 2 cut(s) 486, 578
Bsc4I CCNNNNNNNGG 3 cut(s) 63, 670, 728
Bse1I ACTGG 1 cut(s) 566
Bse3DI GCAATG 1 cut(s) 366
BseDI CCNNGG 2 cut(s) 486, 578
BseGI GGATG 6 cut(s) 166, 232, 244, 286, 412, 679
BseLI CCNNNNNNNGG 3 cut(s) 63, 670, 728
BseMI GCAATG 1 cut(s) 366
BseMII CTCAG 2 cut(s) 71, 239
BseNI ACTGG 1 cut(s) 566
BseRI GAGGAG 2 cut(s) 155, 349
BseXI GCAGC 2 cut(s) 375, 673
Bsh1236I CGCG 1 cut(s) 488
BshFI GGCC 2 cut(s) 663, 798
BsiHKCI CYCGRG 1 cut(s) 495
BslI CCNNNNNNNGG 3 cut(s) 63, 670, 728
BsmAI GTCTC 2 cut(s) 306, 339
BsnI GGCC 2 cut(s) 663, 798
Bso31I GGTCTC 1 cut(s) 306
BsoBI CYCGRG 1 cut(s) 495
Bsp143I GATC 8 cut(s) 23, 44, 124, 163, 242, 420, 472, 640
BspACI CCGC 2 cut(s) 486, 488
BspANI GGCC 2 cut(s) 663, 798
BspCNI CTCAG 2 cut(s) 72, 240
BspFNI CGCG 1 cut(s) 488
BspLI GGNNCC 1 cut(s) 89
BspPI GGATC 1 cut(s) 250
BspQI GCTCTTC 1 cut(s) 69
BspTNI GGTCTC 1 cut(s) 306
BsrDI GCAATG 1 cut(s) 366
BsrI ACTGG 1 cut(s) 566
BssECI CCNNGG 2 cut(s) 486, 578
BssMI GATC 8 cut(s) 23, 44, 124, 163, 242, 420, 472, 640
BssT1I CCWWGG 1 cut(s) 578
Bst4CI ACNGT 1 cut(s) 790
Bst6I CTCTTC 1 cut(s) 69
BstC8I GCNNGC 1 cut(s) 480
BstDEI CTNAG 4 cut(s) 62, 80, 248, 329
BstDSI CCRYGG 1 cut(s) 486
BstENI CCTNNNNNAGG 1 cut(s) 726
BstF5I GGATG 6 cut(s) 166, 232, 244, 286, 412, 679
BstFNI CGCG 1 cut(s) 488
BstH2I RGCGCY 1 cut(s) 832
BstHHI GCGC 1 cut(s) 831
BstKTI GATC 8 cut(s) 26, 47, 127, 166, 245, 423, 475, 643
BstMAI GTCTC 2 cut(s) 306, 339
BstMBI GATC 8 cut(s) 23, 44, 124, 163, 242, 420, 472, 640
BstMWI GCNNNNNNNGC 4 cut(s) 85, 360, 466, 475
BstNSI RCATGY 4 cut(s) 308, 482, 529, 636
BstSFI CTRYAG 1 cut(s) 723
BstUI CGCG 1 cut(s) 488
BstV1I GCAGC 2 cut(s) 375, 673
BstV2I GAAGAC 1 cut(s) 544
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BsuRI GGCC 2 cut(s) 663, 798
BtgI CCRYGG 1 cut(s) 486
BtsCI GGATG 6 cut(s) 166, 232, 244, 286, 412, 679
BtsIMutI CAGTG 2 cut(s) 245, 428
Cac8I GCNNGC 1 cut(s) 480
CfoI GCGC 1 cut(s) 831
Cfr42I CCGCGG 1 cut(s) 489
Csp6I GTAC 1 cut(s) 13
CviAII CATG 6 cut(s) 286, 305, 479, 526, 633, 665
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 4 cut(s) 62, 80, 248, 329
DpnI GATC 8 cut(s) 25, 46, 126, 165, 244, 422, 474, 642
DpnII GATC 8 cut(s) 23, 44, 124, 163, 242, 420, 472, 640
EaeI YGGCCR 1 cut(s) 661
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 578
Eco147I AGGCCT 1 cut(s) 798
Eco31I GGTCTC 1 cut(s) 306
Eco57I CTGAAG 1 cut(s) 452
Eco88I CYCGRG 1 cut(s) 495
EcoNI CCTNNNNNAGG 1 cut(s) 726
EcoT14I CCWWGG 1 cut(s) 578
ErhI CCWWGG 1 cut(s) 578
FaeI CATG 6 cut(s) 289, 308, 482, 529, 636, 668
FatI CATG 6 cut(s) 285, 304, 478, 525, 632, 664
FauNDI CATATG 1 cut(s) 263
FbaI TGATCA 1 cut(s) 420
FblI GTMKAC 1 cut(s) 441
Fnu4HI GCNGC 3 cut(s) 6, 364, 687
FokI GGATG 6 cut(s) 173, 239, 251, 293, 419, 686
Fsp4HI GCNGC 3 cut(s) 6, 364, 687
FspBI CTAG 3 cut(s) 137, 464, 557
GlaI GCGC 1 cut(s) 830
GluI GCNGC 3 cut(s) 6, 364, 687
HaeII RGCGCY 1 cut(s) 832
HaeIII GGCC 2 cut(s) 663, 798
HhaI GCGC 1 cut(s) 831
Hin1II CATG 6 cut(s) 289, 308, 482, 529, 636, 668
Hin6I GCGC 1 cut(s) 829
HinP1I GCGC 1 cut(s) 829
HinfI GANTC 3 cut(s) 347, 493, 748
HphI GGTGA 2 cut(s) 502, 778
Hpy166II GTNNAC 2 cut(s) 134, 442
Hpy188I TCNGA 3 cut(s) 23, 389, 645
Hpy188III TCNNGA 2 cut(s) 42, 464
Hpy8I GTNNAC 2 cut(s) 134, 442
HpyAV CCTTC 5 cut(s) 326, 397, 722, 766, 788
HpyCH4III ACNGT 1 cut(s) 790
HpyCH4V TGCA 4 cut(s) 120, 371, 616, 705
HpyF10VI GCNNNNNNNGC 4 cut(s) 85, 360, 466, 475
HpyF3I CTNAG 4 cut(s) 62, 80, 248, 329
Hsp92II CATG 6 cut(s) 289, 308, 482, 529, 636, 668
HspAI GCGC 1 cut(s) 829
Ksp22I TGATCA 1 cut(s) 420
KspI CCGCGG 1 cut(s) 489
Kzo9I GATC 8 cut(s) 23, 44, 124, 163, 242, 420, 472, 640
LguI GCTCTTC 1 cut(s) 69
LmnI GCTCC 2 cut(s) 93, 724
LpnPI CCDG 1 cut(s) 579
Lsp1109I GCAGC 2 cut(s) 375, 673
LweI GCATC 6 cut(s) 188, 279, 397, 461, 469, 673
MaeI CTAG 3 cut(s) 137, 464, 557
MaeIII GTNAC 3 cut(s) 288, 490, 784
MalI GATC 8 cut(s) 25, 46, 126, 165, 244, 422, 474, 642
MboI GATC 8 cut(s) 23, 44, 124, 163, 242, 420, 472, 640
MboII GAAGA 9 cut(s) 83, 86, 90, 406, 412, 544, 650, 702, 757
MfeI CAATTG 1 cut(s) 379
MflI RGATCY 1 cut(s) 124
MlsI TGGCCA 1 cut(s) 663
MluCI AATT 4 cut(s) 373, 379, 416, 767
MluNI TGGCCA 1 cut(s) 663
MlyI GAGTC 2 cut(s) 341, 487
MmeI TCCRAC 2 cut(s) 216, 651
MnlI CCTC 4 cut(s) 49, 133, 243, 327
Mox20I TGGCCA 1 cut(s) 663
MscI TGGCCA 1 cut(s) 663
MseI TTAA 3 cut(s) 504, 657, 837
Msp20I TGGCCA 1 cut(s) 663
MspA1I CMGCKG 1 cut(s) 488
MunI CAATTG 1 cut(s) 379
MvnI CGCG 1 cut(s) 488
MwoI GCNNNNNNNGC 4 cut(s) 85, 360, 466, 475
NdeI CATATG 1 cut(s) 263
NdeII GATC 8 cut(s) 23, 44, 124, 163, 242, 420, 472, 640
NlaIII CATG 6 cut(s) 289, 308, 482, 529, 636, 668
NlaIV GGNNCC 1 cut(s) 89
NmuCI GTSAC 3 cut(s) 288, 490, 784
NspI RCATGY 4 cut(s) 308, 482, 529, 636
PaeI GCATGC 1 cut(s) 482
PaeR7I CTCGAG 1 cut(s) 495
PceI AGGCCT 1 cut(s) 798
PciI ACATGT 2 cut(s) 304, 525
PciSI GCTCTTC 1 cut(s) 69
PfeI GAWTC 1 cut(s) 748
PflMI CCANNNNNTGG 1 cut(s) 670
PkrI GCNGC 3 cut(s) 7, 365, 688
PleI GAGTC 2 cut(s) 341, 487
PpsI GAGTC 2 cut(s) 341, 487
PscI ACATGT 2 cut(s) 304, 525
PshBI ATTAAT 1 cut(s) 657
PspN4I GGNNCC 1 cut(s) 89
PspXI VCTCGAGB 1 cut(s) 495
PsuI RGATCY 1 cut(s) 124
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SacII CCGCGG 1 cut(s) 489
SapI GCTCTTC 1 cut(s) 69
SaqAI TTAA 3 cut(s) 504, 657, 837
SatI GCNGC 3 cut(s) 6, 364, 687
Sau3AI GATC 8 cut(s) 23, 44, 124, 163, 242, 420, 472, 640
SchI GAGTC 2 cut(s) 341, 487
SetI ASST 6 cut(s) 81, 318, 584, 721, 733, 850
SfaNI GCATC 6 cut(s) 188, 279, 397, 461, 469, 673
SfcI CTRYAG 1 cut(s) 723
Sfr274I CTCGAG 1 cut(s) 495
Sfr303I CCGCGG 1 cut(s) 489
SgrBI CCGCGG 1 cut(s) 489
SlaI CTCGAG 1 cut(s) 495
SmlI CTYRAG 4 cut(s) 40, 349, 495, 800
SmoI CTYRAG 4 cut(s) 40, 349, 495, 800
SphI GCATGC 1 cut(s) 482
Sse9I AATT 4 cut(s) 373, 379, 416, 767
SseBI AGGCCT 1 cut(s) 798
SsiI CCGC 2 cut(s) 486, 488
SspMI CTAG 3 cut(s) 137, 464, 557
StuI AGGCCT 1 cut(s) 798
StyI CCWWGG 1 cut(s) 578
TaaI ACNGT 1 cut(s) 790
TaqI TCGA 1 cut(s) 496
TasI AATT 4 cut(s) 373, 379, 416, 767
TatI WGTACW 1 cut(s) 12
TfiI GAWTC 1 cut(s) 748
Tru1I TTAA 3 cut(s) 504, 657, 837
Tru9I TTAA 3 cut(s) 504, 657, 837
TscAI CASTG 2 cut(s) 252, 435
TseFI GTSAC 3 cut(s) 288, 490, 784
TseI GCWGC 3 cut(s) 5, 363, 686
Tsp45I GTSAC 3 cut(s) 288, 490, 784
TspDTI ATGAA 3 cut(s) 90, 413, 702
TspRI CASTG 2 cut(s) 252, 435
Van91I CCANNNNNTGG 1 cut(s) 670
VspI ATTAAT 1 cut(s) 657
XagI CCTNNNNNAGG 1 cut(s) 726
XbaI TCTAGA 1 cut(s) 463
XceI RCATGY 4 cut(s) 308, 482, 529, 636
XcmI CCANNNNNNNNNTGG 1 cut(s) 671
XhoI CTCGAG 1 cut(s) 495
XmiI GTMKAC 1 cut(s) 441
XspI CTAG 3 cut(s) 137, 464, 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.