Rh2AG115400

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0004261
Physical Location & Seq
Reverse (-)
10351566 .. 10352731
1166 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG115400.1

Sequence Viewer

Length: 870 bp
ATGGCTGCCAAGTACCATGTCAGATCAATCAGCTTGCCTTCAAGGTCTCACCCAACAACTGTTAGAGTTGAAGAAGAGCTCAGCAGGCTCCAATCATGGGAGTCAATTTCATCTGCTTCAACATCAGACTCAATCTGCGGAGGTCTATCTGGTCTTGAAGAGCTGTATGATTGTGTTGATGATCTTCTCCAAATGGCATCAACCCAACAGCTACTCTCTCAACACCAACAAGTGAAATGCACGGATGAGTTGTTGGATGGATCAGCGAAGCTTCTAGACATATGTGGGATCACAAGGGATTTCATGTTACAAGTCAAAGAACATGTGTTTGCTCTTCAGTCTGCTCTTAGGAGGAGAAAGGGAGACTCGAGCATTGAAACTAGCATTGCCAACTACACTAGCTTCAGCAAGAAAATGAAGAAGGATGCCAAGAAATTGATCTCACAGTTGAAACAAGCAGACATCAAGATTGGGTCATCGCAACTTCTAGAGCAAGATCAGCATCTCGCCGCAGTGATTAGGGTTCTTCGACAAGTTTGTGCAAAGAACATGTCCATCTTCCAATCCCTCTTGGTGTTCTTGGCTGTTCCAGTTTCCAAGTCAAACAAGTGGTCTTTGGTATCAAAGTTGATGCACAAAGGAGTCGTAGCATGTGAATCTCAGGCAGACATTAAAGGGCATGAGTTGGATGGTGTGAATTCTGCTCTATCCTCACTATGCAAATCTTCTGAAGTTGAGAAGATTCAAATTGCACATCAGAAATTGGAGGCTTTGGAAGTCTGCATTGAAGGTCTTGAGAGTGGTTTGGAAAGCGTATTTAGGCGCTTGATCAAAACAAGAGCTTCTCTATTGAACATAATCTCGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

289

Amino Acids

31.96

Weight (kDa)

8.36

Isoelectric Point (pI)

60.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 48 - 286 3e-87 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 138, 510
AclWI GGATC 2 cut(s) 268, 296
AcsI RAATTY 1 cut(s) 697
AcuI CTGAAG 3 cut(s) 320, 388, 750
AfaI GTAC 1 cut(s) 14
AfiI CCNNNNNNNGG 1 cut(s) 97
AflIII ACRYGT 2 cut(s) 322, 549
AgsI TTSAA 9 cut(s) 42, 71, 120, 158, 377, 451, 746, 788, 853
AluBI AGCT 7 cut(s) 33, 79, 163, 211, 271, 402, 842
AluI AGCT 7 cut(s) 33, 79, 163, 211, 271, 402, 842
Alw21I GWGCWC 1 cut(s) 81
Alw26I GTCTC 2 cut(s) 51, 357
AlwI GGATC 2 cut(s) 268, 296
Ama87I CYCGRG 1 cut(s) 367
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 697
ArsI GACNNNNNNTTYG 4 cut(s) 536, 568, 596, 628
AspLEI GCGC 1 cut(s) 825
AsuHPI GGTGA 1 cut(s) 41
AvaI CYCGRG 1 cut(s) 367
BanII GRGCYC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 81
BccI CCATC 3 cut(s) 251, 563, 683
BclI TGATCA 1 cut(s) 828
BcoDI GTCTC 2 cut(s) 51, 357
BfaI CTAG 4 cut(s) 275, 381, 399, 488
BfoI RGCGCY 1 cut(s) 826
BisI GCNGC 2 cut(s) 6, 510
BlpI GCTNAGC 1 cut(s) 80
BlsI GCNGC 2 cut(s) 7, 511
BmeT110I CYCGRG 1 cut(s) 367
BmiI GGNNCC 1 cut(s) 89
BmsI GCATC 4 cut(s) 206, 415, 511, 621
Bpu1102I GCTNAGC 1 cut(s) 80
BpuEI CTTGAG 1 cut(s) 815
BsaBI GATNNNNATC 1 cut(s) 501
BsaI GGTCTC 1 cut(s) 51
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 590
Bse3DI GCAATG 1 cut(s) 384
Bse8I GATNNNNATC 1 cut(s) 501
BseGI GGATG 4 cut(s) 250, 262, 430, 694
BseJI GATNNNNATC 1 cut(s) 501
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMI GCAATG 1 cut(s) 384
BseMII CTCAG 2 cut(s) 94, 674
BseNI ACTGG 1 cut(s) 590
BseRI GAGGAG 1 cut(s) 367
BsiHKAI GWGCWC 1 cut(s) 81
BsiHKCI CYCGRG 1 cut(s) 367
BslI CCNNNNNNNGG 1 cut(s) 97
BsmAI GTCTC 2 cut(s) 51, 357
Bso31I GGTCTC 1 cut(s) 51
BsoBI CYCGRG 1 cut(s) 367
Bsp1286I GDGCHC 1 cut(s) 81
Bsp143I GATC 7 cut(s) 23, 181, 260, 288, 438, 496, 828
Bsp1720I GCTNAGC 1 cut(s) 80
BspACI CCGC 2 cut(s) 138, 510
BspCNI CTCAG 2 cut(s) 93, 673
BspLI GGNNCC 1 cut(s) 89
BspPI GGATC 2 cut(s) 268, 296
BspQI GCTCTTC 3 cut(s) 69, 153, 339
BspTNI GGTCTC 1 cut(s) 51
BsrDI GCAATG 1 cut(s) 384
BsrI ACTGG 1 cut(s) 590
BssMI GATC 7 cut(s) 23, 181, 260, 288, 438, 496, 828
Bst4CI ACNGT 2 cut(s) 61, 447
Bst6I CTCTTC 3 cut(s) 69, 153, 339
BstC8I GCNNGC 2 cut(s) 35, 86
BstDEI CTNAG 3 cut(s) 80, 347, 660
BstF5I GGATG 4 cut(s) 250, 262, 430, 694
BstH2I RGCGCY 1 cut(s) 826
BstHHI GCGC 1 cut(s) 825
BstKTI GATC 7 cut(s) 26, 184, 263, 291, 441, 499, 831
BstMAI GTCTC 2 cut(s) 51, 357
BstMBI GATC 7 cut(s) 23, 181, 260, 288, 438, 496, 828
BstMWI GCNNNNNNNGC 2 cut(s) 85, 499
BstNSI RCATGY 3 cut(s) 326, 553, 654
BtgZI GCGATG 1 cut(s) 462
BtsCI GGATG 4 cut(s) 250, 262, 430, 694
BtsI GCAGTG 1 cut(s) 519
BtsIMutI CAGTG 1 cut(s) 519
Cac8I GCNNGC 2 cut(s) 35, 86
CfoI GCGC 1 cut(s) 825
Csp6I GTAC 1 cut(s) 13
CviAII CATG 7 cut(s) 17, 96, 304, 323, 550, 651, 680
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 3 cut(s) 80, 347, 660
DpnI GATC 7 cut(s) 25, 183, 262, 290, 440, 498, 830
DpnII GATC 7 cut(s) 23, 181, 260, 288, 438, 496, 828
Eam1104I CTCTTC 3 cut(s) 69, 153, 339
EarI CTCTTC 3 cut(s) 69, 153, 339
Ecl136II GAGCTC 1 cut(s) 79
Eco24I GRGCYC 1 cut(s) 81
Eco31I GGTCTC 1 cut(s) 51
Eco53kI GAGCTC 1 cut(s) 79
Eco57I CTGAAG 3 cut(s) 320, 388, 750
Eco88I CYCGRG 1 cut(s) 367
EcoICRI GAGCTC 1 cut(s) 79
EcoRI GAATTC 1 cut(s) 697
EcoT38I GRGCYC 1 cut(s) 81
FaeI CATG 7 cut(s) 20, 99, 307, 326, 553, 654, 683
FatI CATG 7 cut(s) 16, 95, 303, 322, 549, 650, 679
FauNDI CATATG 1 cut(s) 281
FbaI TGATCA 1 cut(s) 828
Fnu4HI GCNGC 2 cut(s) 6, 510
FokI GGATG 4 cut(s) 257, 269, 437, 701
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 2 cut(s) 6, 510
FspBI CTAG 4 cut(s) 275, 381, 399, 488
GlaI GCGC 1 cut(s) 824
GluI GCNGC 2 cut(s) 6, 510
HaeII RGCGCY 1 cut(s) 826
HhaI GCGC 1 cut(s) 825
Hin1II CATG 7 cut(s) 20, 99, 307, 326, 553, 654, 683
Hin6I GCGC 1 cut(s) 823
HinP1I GCGC 1 cut(s) 823
HindIII AAGCTT 1 cut(s) 269
HinfI GANTC 6 cut(s) 101, 128, 365, 642, 656, 742
HphI GGTGA 1 cut(s) 41
Hpy188I TCNGA 4 cut(s) 23, 127, 730, 759
Hpy188III TCNNGA 5 cut(s) 155, 275, 466, 488, 794
HpyAV CCTTC 3 cut(s) 48, 415, 782
HpyCH4III ACNGT 2 cut(s) 61, 447
HpyCH4V TGCA 6 cut(s) 240, 542, 634, 720, 752, 783
HpyF10VI GCNNNNNNNGC 2 cut(s) 85, 499
HpyF3I CTNAG 3 cut(s) 80, 347, 660
Hsp92II CATG 7 cut(s) 20, 99, 307, 326, 553, 654, 683
HspAI GCGC 1 cut(s) 823
Ksp22I TGATCA 1 cut(s) 828
Kzo9I GATC 7 cut(s) 23, 181, 260, 288, 438, 496, 828
LguI GCTCTTC 3 cut(s) 69, 153, 339
LmnI GCTCC 1 cut(s) 93
LpnPI CCDG 4 cut(s) 70, 135, 603, 647
LweI GCATC 4 cut(s) 206, 415, 511, 621
MaeI CTAG 4 cut(s) 275, 381, 399, 488
MaeIII GTNAC 1 cut(s) 306
MalI GATC 7 cut(s) 25, 183, 262, 290, 440, 498, 830
MboI GATC 7 cut(s) 23, 181, 260, 288, 438, 496, 828
MhlI GDGCHC 1 cut(s) 81
MluCI AATT 5 cut(s) 105, 434, 697, 747, 761
MlyI GAGTC 4 cut(s) 110, 122, 359, 651
MmeI TCCRAC 2 cut(s) 234, 666
MnlI CCTC 5 cut(s) 134, 345, 578, 721, 760
MseI TTAA 1 cut(s) 672
MwoI GCNNNNNNNGC 2 cut(s) 85, 499
NdeI CATATG 1 cut(s) 281
NdeII GATC 7 cut(s) 23, 181, 260, 288, 438, 496, 828
NlaIII CATG 7 cut(s) 20, 99, 307, 326, 553, 654, 683
NlaIV GGNNCC 1 cut(s) 89
NspI RCATGY 3 cut(s) 326, 553, 654
PaeR7I CTCGAG 1 cut(s) 367
PciI ACATGT 2 cut(s) 322, 549
PciSI GCTCTTC 3 cut(s) 69, 153, 339
PfeI GAWTC 2 cut(s) 656, 742
PkrI GCNGC 2 cut(s) 7, 511
PleI GAGTC 4 cut(s) 109, 122, 359, 650
PpsI GAGTC 4 cut(s) 109, 122, 359, 650
PscI ACATGT 2 cut(s) 322, 549
Psp124BI GAGCTC 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 89
PspXI VCTCGAGB 1 cut(s) 367
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SacI GAGCTC 1 cut(s) 81
SapI GCTCTTC 3 cut(s) 69, 153, 339
SaqAI TTAA 1 cut(s) 672
SatI GCNGC 2 cut(s) 6, 510
Sau3AI GATC 7 cut(s) 23, 181, 260, 288, 438, 496, 828
SchI GAGTC 4 cut(s) 110, 122, 359, 651
SduI GDGCHC 1 cut(s) 81
SfaNI GCATC 4 cut(s) 206, 415, 511, 621
Sfr274I CTCGAG 1 cut(s) 367
SlaI CTCGAG 1 cut(s) 367
SmlI CTYRAG 2 cut(s) 367, 794
SmoI CTYRAG 2 cut(s) 367, 794
Sse9I AATT 5 cut(s) 105, 434, 697, 747, 761
SsiI CCGC 2 cut(s) 138, 510
SspMI CTAG 4 cut(s) 275, 381, 399, 488
SstI GAGCTC 1 cut(s) 81
TaaI ACNGT 2 cut(s) 61, 447
TaqI TCGA 2 cut(s) 368, 529
TasI AATT 5 cut(s) 105, 434, 697, 747, 761
TauI GCSGC 1 cut(s) 512
TfiI GAWTC 2 cut(s) 656, 742
Tru1I TTAA 1 cut(s) 672
Tru9I TTAA 1 cut(s) 672
TscAI CASTG 1 cut(s) 519
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 3 cut(s) 99, 292, 431
TspGWI ACGGA 1 cut(s) 257
TspRI CASTG 1 cut(s) 519
XapI RAATTY 1 cut(s) 697
XbaI TCTAGA 2 cut(s) 274, 487
XceI RCATGY 3 cut(s) 326, 553, 654
XhoI CTCGAG 1 cut(s) 367
XspI CTAG 4 cut(s) 275, 381, 399, 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.