Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004261

Physical Location & Seq

Genomic Coordinates Forward (+)

19302646 .. 19303521

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1234900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGATGCCAAGTACGAAGTCAGATCAATCAGCCTACCCTCAAGATCACACCCAACCACTATTAGAGTTGAAGAAGAGCTGAGTAAGCGCCAAACATCTTCAGCTTCTGCTTCAATATGTAAAGTTCTATGTGGACTAGAGGAGTTGTATGATTGTGTGGATGATCTTTTGCCGATGGCATCAACCCAACAACTCATTTCTCAATACCAACAAGGGAAGTGTATGGATGAGTTGTTGGATGGATCACTCAGGCTCTTGGACCTATGTGGCATCACAAGGGACGCCATGTCACAAATCAAGGAACATGTTAGAGACCTTCAATCTACTCTTAGGAGGAGAAATGGAGACTCAAACATAGAAAGCAGCATTGCAAATTACAATTGCTTCAGAAAGAAGATGAAGAAGGATGCCAAGAAATTGATCACATCATTGAAGCAAGTAAACAACAAAGCACCACAACTTATGGTGCATGATCAGCGTGCTCCTGCAGTGGTTCGAGTTCTTAGAGAAGTTTTTGGTAAGAATATGTCTATCTTTCAATCCCTATTGGTCTTCTTCGCAGTTCCAGTTTCAAGACCAATGTTAAACAAGTGGTGTCTGATATCAAAGTTAATGCACAAGGGAGTGATAGCATGTGAAGATCAGAAGGAGGACATTCATGGCCATGAGTTGGATGGTGTTGATGCTGCTCTCTACTCTCTATGCAAATCTTCATCAGCTCCTGCGGAAGGTGCTAATGTTGAGAAGATTCAAAATGCACATAAAAAATTGGAGACTTTGGAAGTCACCGTTGAAGGCCTTGAGAAGGGTTTGGAGAGCATTTTTAGGCGCTTGATTAAAACAAGAGCTTCTCTTTTGAACATAATCTCACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF241

Protein Analysis

292

Amino Acids

32.69

Weight (kDa)

8.78

Isoelectric Point (pI)

59.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BPS1	PF03087	43 - 288	2.2e-85	Protein BPS1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17680 AT4G35690 AT4G35710
fragaria_vesca	FvH4_1g10690 FvH4_1g10710
malus_domestica	MD02G1120800.v1.1 MD02G1121000.v1.1 MD15G1234800.v1.1 MD15G1234900.v1.1
prunus_persica	Prupe.7G178200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0097861 RchiOBHm_Chr2g0097871
rosa_laevigata	RLG00000016741
rosa_multiflora	Rmu_co8105842.1_g000001 Rmu_sc0000974.1_g000030 Rmu_sc0008442.1_g000014 Rmu_sc0008442.1_g000017 Rmu_sc0020316.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144480 Rroxscaffold_2G00144520
rosa_rugosa	Rorug02G0068800 Rorug02G0068900
rosa_samantha	Rh2AG115400 Rh2AG115600 Rh2BG118400 Rh2BG118500 Rh2CG119900 Rh2CG120000 Rh2DG119700 Rh2DG119800
rosa_wichuraiana	Rw2G009020 Rw2G009040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	670
AciI	CCGC	1 cut(s)	725
AclWI	GGATC	1 cut(s)	250
AcoI	YGGCCR	1 cut(s)	661
AcuI	CTGAAG	2 cut(s)	84, 370
AcyI	GRCGYC	1 cut(s)	282
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	3 cut(s)	670, 728, 805
AflIII	ACRYGT	1 cut(s)	304
AgsI	TTSAA	9 cut(s)	71, 114, 320, 433, 539, 573, 752, 794, 859
AhdI	GACNNNNNGTC	1 cut(s)	286
AluBI	AGCT	4 cut(s)	79, 104, 719, 848
AluI	AGCT	4 cut(s)	79, 104, 719, 848
Alw21I	GWGCWC	1 cut(s)	484
Alw26I	GTCTC	3 cut(s)	306, 339, 767
AlwI	GGATC	1 cut(s)	250
AlwNI	CAGNNNCTG	2 cut(s)	107, 722
AoxI	GGCC	2 cut(s)	661, 796
ApeKI	GCWGC	2 cut(s)	363, 686
AspLEI	GCGC	2 cut(s)	90, 831
AspS9I	GGNCC	1 cut(s)	259
AsuHPI	GGTGA	1 cut(s)	778
AvaII	GGWCC	1 cut(s)	259
BalI	TGGCCA	1 cut(s)	663
BbsI	GAAGAC	1 cut(s)	544
Bbv12I	GWGCWC	1 cut(s)	484
BbvI	GCAGC	2 cut(s)	375, 673
BccI	CCATC	3 cut(s)	169, 233, 668
BclI	TGATCA	2 cut(s)	420, 472
BcoDI	GTCTC	3 cut(s)	306, 339, 767
BfaI	CTAG	1 cut(s)	137
BfmI	CTRYAG	1 cut(s)	486
BfoI	RGCGCY	2 cut(s)	91, 832
BisI	GCNGC	2 cut(s)	364, 687
BlsI	GCNGC	2 cut(s)	365, 688
Bme18I	GGWCC	1 cut(s)	259
BmeRI	GACNNNNNGTC	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	259
BmsI	GCATC	4 cut(s)	188, 279, 397, 673
BpiI	GAAGAC	1 cut(s)	544
BpuEI	CTTGAG	2 cut(s)	25, 821
BsaHI	GRCGYC	1 cut(s)	282
BsaI	GGTCTC	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	3 cut(s)	670, 728, 805
Bse1I	ACTGG	1 cut(s)	566
Bse3DI	GCAATG	1 cut(s)	366
BseGI	GGATG	6 cut(s)	10, 166, 232, 244, 412, 679
BseLI	CCNNNNNNNGG	3 cut(s)	670, 728, 805
BseMI	GCAATG	1 cut(s)	366
BseMII	CTCAG	2 cut(s)	71, 262
BseNI	ACTGG	1 cut(s)	566
BseRI	GAGGAG	2 cut(s)	155, 349
BseXI	GCAGC	2 cut(s)	375, 673
BshFI	GGCC	2 cut(s)	663, 798
BsiHKAI	GWGCWC	1 cut(s)	484
BslFI	GGGAC	1 cut(s)	293
BslI	CCNNNNNNNGG	3 cut(s)	670, 728, 805
BsmAI	GTCTC	3 cut(s)	306, 339, 767
BsmFI	GGGAC	1 cut(s)	293
BsnI	GGCC	2 cut(s)	663, 798
Bso31I	GGTCTC	1 cut(s)	306
Bsp1286I	GDGCHC	1 cut(s)	484
Bsp143I	GATC	7 cut(s)	23, 44, 163, 242, 420, 472, 640
BspACI	CCGC	1 cut(s)	725
BspANI	GGCC	2 cut(s)	663, 798
BspCNI	CTCAG	2 cut(s)	72, 261
BspMAI	CTGCAG	1 cut(s)	490
BspPI	GGATC	1 cut(s)	250
BspQI	GCTCTTC	1 cut(s)	69
BspTNI	GGTCTC	1 cut(s)	306
BsrDI	GCAATG	1 cut(s)	366
BsrI	ACTGG	1 cut(s)	566
BssMI	GATC	7 cut(s)	23, 44, 163, 242, 420, 472, 640
BssNI	GRCGYC	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	790
Bst6I	CTCTTC	1 cut(s)	69
BstACI	GRCGYC	1 cut(s)	282
BstC8I	GCNNGC	1 cut(s)	480
BstDEI	CTNAG	4 cut(s)	80, 248, 329, 503
BstENI	CCTNNNNNAGG	2 cut(s)	726, 803
BstF5I	GGATG	6 cut(s)	10, 166, 232, 244, 412, 679
BstH2I	RGCGCY	2 cut(s)	91, 832
BstHHI	GCGC	2 cut(s)	90, 831
BstKTI	GATC	7 cut(s)	26, 47, 166, 245, 423, 475, 643
BstMAI	GTCTC	3 cut(s)	306, 339, 767
BstMBI	GATC	7 cut(s)	23, 44, 163, 242, 420, 472, 640
BstMWI	GCNNNNNNNGC	3 cut(s)	85, 475, 731
BstNSI	RCATGY	2 cut(s)	308, 636
BstSFI	CTRYAG	1 cut(s)	486
BstV1I	GCAGC	2 cut(s)	375, 673
BstV2I	GAAGAC	1 cut(s)	544
BsuRI	GGCC	2 cut(s)	663, 798
BtsCI	GGATG	6 cut(s)	10, 166, 232, 244, 412, 679
BtsI	GCAGTG	1 cut(s)	495
BtsIMutI	CAGTG	1 cut(s)	495
Cac8I	GCNNGC	1 cut(s)	480
CaiI	CAGNNNCTG	2 cut(s)	107, 722
CfoI	GCGC	2 cut(s)	90, 831
Cfr13I	GGNCC	1 cut(s)	259
CseI	GACGC	1 cut(s)	290
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	6 cut(s)	286, 305, 470, 633, 659, 665
CviJI	RGCY	8 cut(s)	33, 79, 104, 253, 663, 719, 798, 848
CviKI_1	RGCY	8 cut(s)	33, 79, 104, 253, 663, 719, 798, 848
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	4 cut(s)	80, 248, 329, 503
DpnI	GATC	7 cut(s)	25, 46, 165, 244, 422, 474, 642
DpnII	GATC	7 cut(s)	23, 44, 163, 242, 420, 472, 640
DriI	GACNNNNNGTC	1 cut(s)	286
EaeI	YGGCCR	1 cut(s)	661
Eam1104I	CTCTTC	1 cut(s)	69
Eam1105I	GACNNNNNGTC	1 cut(s)	286
EarI	CTCTTC	1 cut(s)	69
Eco147I	AGGCCT	1 cut(s)	798
Eco31I	GGTCTC	1 cut(s)	306
Eco32I	GATATC	1 cut(s)	603
Eco47I	GGWCC	1 cut(s)	259
Eco57I	CTGAAG	2 cut(s)	84, 370
EcoNI	CCTNNNNNAGG	2 cut(s)	726, 803
EcoRV	GATATC	1 cut(s)	603
FaeI	CATG	6 cut(s)	289, 308, 473, 636, 662, 668
FaqI	GGGAC	1 cut(s)	293
FatI	CATG	6 cut(s)	285, 304, 469, 632, 658, 664
FbaI	TGATCA	2 cut(s)	420, 472
Fnu4HI	GCNGC	2 cut(s)	364, 687
FokI	GGATG	6 cut(s)	17, 173, 239, 251, 419, 686
Fsp4HI	GCNGC	2 cut(s)	364, 687
FspBI	CTAG	1 cut(s)	137
GlaI	GCGC	2 cut(s)	89, 830
GluI	GCNGC	2 cut(s)	364, 687
HaeII	RGCGCY	2 cut(s)	91, 832
HaeIII	GGCC	2 cut(s)	663, 798
HgaI	GACGC	1 cut(s)	290
HhaI	GCGC	2 cut(s)	90, 831
Hin1I	GRCGYC	1 cut(s)	282
Hin1II	CATG	6 cut(s)	289, 308, 473, 636, 662, 668
Hin6I	GCGC	2 cut(s)	88, 829
HinP1I	GCGC	2 cut(s)	88, 829
HinfI	GANTC	2 cut(s)	347, 748
HphI	GGTGA	1 cut(s)	778
Hpy166II	GTNNAC	2 cut(s)	134, 442
Hpy188I	TCNGA	4 cut(s)	23, 389, 600, 645
Hpy188III	TCNNGA	2 cut(s)	42, 573
Hpy8I	GTNNAC	2 cut(s)	134, 442
HpyAV	CCTTC	6 cut(s)	326, 397, 640, 722, 788, 799
HpyCH4III	ACNGT	1 cut(s)	790
HpyCH4V	TGCA	6 cut(s)	371, 469, 488, 616, 705, 758
HpyF10VI	GCNNNNNNNGC	3 cut(s)	85, 475, 731
HpyF3I	CTNAG	4 cut(s)	80, 248, 329, 503
Hsp92I	GRCGYC	1 cut(s)	282
Hsp92II	CATG	6 cut(s)	289, 308, 473, 636, 662, 668
HspAI	GCGC	2 cut(s)	88, 829
Ksp22I	TGATCA	2 cut(s)	420, 472
Kzo9I	GATC	7 cut(s)	23, 44, 163, 242, 420, 472, 640
LguI	GCTCTTC	1 cut(s)	69
LmnI	GCTCC	2 cut(s)	487, 724
LpnPI	CCDG	4 cut(s)	235, 498, 579, 735
Lsp1109I	GCAGC	2 cut(s)	375, 673
LweI	GCATC	4 cut(s)	188, 279, 397, 673
MaeI	CTAG	1 cut(s)	137
MaeIII	GTNAC	2 cut(s)	288, 784
MalI	GATC	7 cut(s)	25, 46, 165, 244, 422, 474, 642
MboI	GATC	7 cut(s)	23, 44, 163, 242, 420, 472, 640
MfeI	CAATTG	1 cut(s)	379
MhlI	GDGCHC	1 cut(s)	484
MlsI	TGGCCA	1 cut(s)	663
MluCI	AATT	4 cut(s)	373, 379, 416, 767
MluNI	TGGCCA	1 cut(s)	663
MlyI	GAGTC	1 cut(s)	341
MmeI	TCCRAC	2 cut(s)	216, 651
MnlI	CCTC	4 cut(s)	49, 133, 327, 643
Mox20I	TGGCCA	1 cut(s)	663
MscI	TGGCCA	1 cut(s)	663
MseI	TTAA	3 cut(s)	584, 611, 837
MslI	CAYNNNNRTG	1 cut(s)	663
Msp20I	TGGCCA	1 cut(s)	663
MunI	CAATTG	1 cut(s)	379
MwoI	GCNNNNNNNGC	3 cut(s)	85, 475, 731
NdeII	GATC	7 cut(s)	23, 44, 163, 242, 420, 472, 640
NlaIII	CATG	6 cut(s)	289, 308, 473, 636, 662, 668
NmuCI	GTSAC	2 cut(s)	288, 784
NspI	RCATGY	2 cut(s)	308, 636
PceI	AGGCCT	1 cut(s)	798
PciI	ACATGT	1 cut(s)	304
PciSI	GCTCTTC	1 cut(s)	69
PfeI	GAWTC	1 cut(s)	748
PflMI	CCANNNNNTGG	1 cut(s)	670
PkrI	GCNGC	2 cut(s)	365, 688
PleI	GAGTC	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	341
PscI	ACATGT	1 cut(s)	304
PspPI	GGNCC	1 cut(s)	259
PstI	CTGCAG	1 cut(s)	490
PstNI	CAGNNNCTG	2 cut(s)	107, 722
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
RseI	CAYNNNNRTG	1 cut(s)	663
SapI	GCTCTTC	1 cut(s)	69
SaqAI	TTAA	3 cut(s)	584, 611, 837
SatI	GCNGC	2 cut(s)	364, 687
Sau3AI	GATC	7 cut(s)	23, 44, 163, 242, 420, 472, 640
Sau96I	GGNCC	1 cut(s)	259
SchI	GAGTC	1 cut(s)	341
SduI	GDGCHC	1 cut(s)	484
SetI	ASST	7 cut(s)	81, 106, 264, 318, 721, 733, 850
SfaNI	GCATC	4 cut(s)	188, 279, 397, 673
SfcI	CTRYAG	1 cut(s)	486
SinI	GGWCC	1 cut(s)	259
SmiMI	CAYNNNNRTG	1 cut(s)	663
SmlI	CTYRAG	2 cut(s)	40, 800
SmoI	CTYRAG	2 cut(s)	40, 800
Sse9I	AATT	4 cut(s)	373, 379, 416, 767
SseBI	AGGCCT	1 cut(s)	798
SsiI	CCGC	1 cut(s)	725
SspMI	CTAG	1 cut(s)	137
StuI	AGGCCT	1 cut(s)	798
TaaI	ACNGT	1 cut(s)	790
TaqI	TCGA	1 cut(s)	496
TasI	AATT	4 cut(s)	373, 379, 416, 767
TfiI	GAWTC	1 cut(s)	748
Tru1I	TTAA	3 cut(s)	584, 611, 837
Tru9I	TTAA	3 cut(s)	584, 611, 837
TscAI	CASTG	1 cut(s)	495
TseFI	GTSAC	2 cut(s)	288, 784
TseI	GCWGC	2 cut(s)	363, 686
Tsp45I	GTSAC	2 cut(s)	288, 784
TspDTI	ATGAA	3 cut(s)	413, 647, 702
TspRI	CASTG	1 cut(s)	495
Van91I	CCANNNNNTGG	1 cut(s)	670
VpaK11BI	GGWCC	1 cut(s)	259
XagI	CCTNNNNNAGG	2 cut(s)	726, 803
XceI	RCATGY	2 cut(s)	308, 636
XcmI	CCANNNNNNNNNTGG	1 cut(s)	671
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.