RchiOBHm_Chr2g0097871

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0004261
Physical Location & Seq
Forward (+)
10383272 .. 10384488
1217 bp
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UTR
Exon/CDS
Intron
PRQ47270

Sequence Viewer

Length: 873 bp
ATGGCTGCCAAGTACCGTGTCAGATCAATCAGCTTGCCCTCAATAAGGTCTCACCCAACAACTGTTAGAGTTGAAGAAAAGCTCAGTAGGCTCCAATCATGGGAGTCTACTTCATCTGCTTCAACATCAGACTCAATCTGTAGAGGTCTGTCTGGTCTTGAAGAGTTGTATGATTGTGTTGATGATCTTCTCCAAATGACATCAACCCAACAGCTACTCTCTCAACACCAACAAGAGAAATGCATGGATGAGTTGTTGGATGGATCAGTAAAGCTTCTAGACATATGTGGGATCACAAGGGATTTCATGTTACAAATCAAACAACATGTCCTTGCTCTTCAATCTGCTCTTAGGAGAAGAAAGGGAGACTCGAGCATTGAAACTAGCATTGCCAACTACACTAGCTTCAGCAAGAAAATGAAGAAGGATGCCAAGAAATTGATCTCACAGTTGAAACAAGCAGACATCAAGATTGGGTCATCACAACTTCTAGAGCAAGATCAGCATCTCGCCGCAGTGATTAGGGTTCTTCGACAAGTTTGTGCAAAGAACATGTCCATCTTCCAATCCCTCTTGGTGTTCTTGGCTGTTCCAGTTTCCAAGTCAAACAAGTGGTCTTTGGTATCAAAGTTGATGCACAAAGGAGTCTTGGCATGTGAATCTCAAGCAGACATTAATGGGCATGAGCTGGATGGTGTGGATTCTGCTCTATCCTCACTATGCAAATCTGCTGAAGTTGAGAAGATTCAAAGTGCACATAAGAAATTGGAGGCTTTGGAAGACTGCATTGAAGGCCTTGAGAGTGGTTTGGAGAGTGTATTTAAGCGCTTGATCAAAACAAGAGCTTCTCTTTTGAACATAATCTCACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

290

Amino Acids

32.22

Weight (kDa)

8.7

Isoelectric Point (pI)

58.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 49 - 287 1e-89 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 107
AciI CCGC 1 cut(s) 513
AclWI GGATC 2 cut(s) 271, 299
AcuI CTGAAG 2 cut(s) 391, 753
AfaI GTAC 1 cut(s) 14
AfeI AGCGCT 1 cut(s) 827
AfiI CCNNNNNNNGG 2 cut(s) 45, 100
AflIII ACRYGT 2 cut(s) 325, 552
AgsI TTSAA 9 cut(s) 74, 123, 161, 341, 380, 454, 749, 791, 856
AluBI AGCT 7 cut(s) 33, 82, 214, 274, 405, 688, 845
AluI AGCT 7 cut(s) 33, 82, 214, 274, 405, 688, 845
Alw21I GWGCWC 1 cut(s) 757
Alw26I GTCTC 2 cut(s) 54, 360
Alw44I GTGCAC 1 cut(s) 753
AlwI GGATC 2 cut(s) 271, 299
Ama87I CYCGRG 1 cut(s) 370
Aor51HI AGCGCT 1 cut(s) 827
AoxI GGCC 1 cut(s) 793
ApaLI GTGCAC 1 cut(s) 753
ApeKI GCWGC 1 cut(s) 5
ArsI GACNNNNNNTTYG 6 cut(s) 312, 344, 539, 571, 599, 631
AseI ATTAAT 1 cut(s) 675
AspLEI GCGC 1 cut(s) 828
AsuHPI GGTGA 1 cut(s) 44
AvaI CYCGRG 1 cut(s) 370
BaeGI GKGCMC 1 cut(s) 757
BbsI GAAGAC 1 cut(s) 786
Bbv12I GWGCWC 1 cut(s) 757
BccI CCATC 3 cut(s) 254, 566, 686
BclI TGATCA 1 cut(s) 831
BcoDI GTCTC 2 cut(s) 54, 360
BfaI CTAG 4 cut(s) 278, 384, 402, 491
BfmI CTRYAG 1 cut(s) 139
BfoI RGCGCY 1 cut(s) 829
BisI GCNGC 2 cut(s) 6, 513
BlsI GCNGC 2 cut(s) 7, 514
BmeT110I CYCGRG 1 cut(s) 370
BmiI GGNNCC 1 cut(s) 92
BmsI GCATC 3 cut(s) 418, 514, 624
BpiI GAAGAC 1 cut(s) 786
BpuEI CTTGAG 2 cut(s) 648, 818
BsaBI GATNNNNATC 1 cut(s) 504
BsaI GGTCTC 1 cut(s) 54
Bsc4I CCNNNNNNNGG 2 cut(s) 45, 100
Bse1I ACTGG 1 cut(s) 593
Bse3DI GCAATG 1 cut(s) 387
Bse8I GATNNNNATC 1 cut(s) 504
BseGI GGATG 4 cut(s) 253, 265, 433, 697
BseJI GATNNNNATC 1 cut(s) 504
BseLI CCNNNNNNNGG 2 cut(s) 45, 100
BseMI GCAATG 1 cut(s) 387
BseMII CTCAG 1 cut(s) 97
BseNI ACTGG 1 cut(s) 593
BseSI GKGCMC 1 cut(s) 757
BshFI GGCC 1 cut(s) 795
BsiHKAI GWGCWC 1 cut(s) 757
BsiHKCI CYCGRG 1 cut(s) 370
BslI CCNNNNNNNGG 2 cut(s) 45, 100
BsmAI GTCTC 2 cut(s) 54, 360
BsnI GGCC 1 cut(s) 795
Bso31I GGTCTC 1 cut(s) 54
BsoBI CYCGRG 1 cut(s) 370
Bsp1286I GDGCHC 1 cut(s) 757
Bsp143I GATC 7 cut(s) 23, 184, 263, 291, 441, 499, 831
BspACI CCGC 1 cut(s) 513
BspANI GGCC 1 cut(s) 795
BspCNI CTCAG 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 92
BspPI GGATC 2 cut(s) 271, 299
BspQI GCTCTTC 1 cut(s) 342
BspTNI GGTCTC 1 cut(s) 54
BsrDI GCAATG 1 cut(s) 387
BsrI ACTGG 1 cut(s) 593
BssMI GATC 7 cut(s) 23, 184, 263, 291, 441, 499, 831
Bst4CI ACNGT 3 cut(s) 17, 64, 450
Bst6I CTCTTC 2 cut(s) 156, 342
BstC8I GCNNGC 1 cut(s) 35
BstDEI CTNAG 2 cut(s) 83, 350
BstENI CCTNNNNNAGG 1 cut(s) 43
BstF5I GGATG 4 cut(s) 253, 265, 433, 697
BstH2I RGCGCY 1 cut(s) 829
BstHHI GCGC 1 cut(s) 828
BstKTI GATC 7 cut(s) 26, 187, 266, 294, 444, 502, 834
BstMAI GTCTC 2 cut(s) 54, 360
BstMBI GATC 7 cut(s) 23, 184, 263, 291, 441, 499, 831
BstMWI GCNNNNNNNGC 3 cut(s) 88, 502, 792
BstNSI RCATGY 3 cut(s) 329, 556, 657
BstSFI CTRYAG 1 cut(s) 139
BstSLI GKGCMC 1 cut(s) 757
BstV2I GAAGAC 1 cut(s) 786
BsuRI GGCC 1 cut(s) 795
BtsCI GGATG 4 cut(s) 253, 265, 433, 697
BtsI GCAGTG 1 cut(s) 522
BtsIMutI CAGTG 1 cut(s) 522
Cac8I GCNNGC 1 cut(s) 35
CfoI GCGC 1 cut(s) 828
Csp6I GTAC 1 cut(s) 13
CviAII CATG 7 cut(s) 99, 244, 307, 326, 553, 654, 683
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 2 cut(s) 83, 350
DpnI GATC 7 cut(s) 25, 186, 265, 293, 443, 501, 833
DpnII GATC 7 cut(s) 23, 184, 263, 291, 441, 499, 831
Eam1104I CTCTTC 2 cut(s) 156, 342
EarI CTCTTC 2 cut(s) 156, 342
Eco147I AGGCCT 1 cut(s) 795
Eco31I GGTCTC 1 cut(s) 54
Eco47III AGCGCT 1 cut(s) 827
Eco57I CTGAAG 2 cut(s) 391, 753
Eco88I CYCGRG 1 cut(s) 370
EcoNI CCTNNNNNAGG 1 cut(s) 43
EcoT22I ATGCAT 1 cut(s) 245
FaeI CATG 7 cut(s) 102, 247, 310, 329, 556, 657, 686
FatI CATG 7 cut(s) 98, 243, 306, 325, 552, 653, 682
FauNDI CATATG 1 cut(s) 284
FbaI TGATCA 1 cut(s) 831
FblI GTMKAC 1 cut(s) 107
Fnu4HI GCNGC 2 cut(s) 6, 513
FokI GGATG 4 cut(s) 260, 272, 440, 704
Fsp4HI GCNGC 2 cut(s) 6, 513
FspBI CTAG 4 cut(s) 278, 384, 402, 491
GlaI GCGC 1 cut(s) 827
GluI GCNGC 2 cut(s) 6, 513
HaeII RGCGCY 1 cut(s) 829
HaeIII GGCC 1 cut(s) 795
HhaI GCGC 1 cut(s) 828
Hin1II CATG 7 cut(s) 102, 247, 310, 329, 556, 657, 686
Hin6I GCGC 1 cut(s) 826
HinP1I GCGC 1 cut(s) 826
HindIII AAGCTT 1 cut(s) 272
HinfI GANTC 7 cut(s) 104, 131, 368, 645, 659, 701, 745
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 2 cut(s) 108, 755
Hpy188I TCNGA 2 cut(s) 23, 130
Hpy188III TCNNGA 4 cut(s) 158, 278, 469, 491
Hpy8I GTNNAC 2 cut(s) 108, 755
HpyAV CCTTC 2 cut(s) 418, 785
HpyCH4III ACNGT 3 cut(s) 17, 64, 450
HpyCH4V TGCA 6 cut(s) 243, 545, 637, 723, 755, 786
HpyF10VI GCNNNNNNNGC 3 cut(s) 88, 502, 792
HpyF3I CTNAG 2 cut(s) 83, 350
Hsp92II CATG 7 cut(s) 102, 247, 310, 329, 556, 657, 686
HspAI GCGC 1 cut(s) 826
Ksp22I TGATCA 1 cut(s) 831
Kzo9I GATC 7 cut(s) 23, 184, 263, 291, 441, 499, 831
LguI GCTCTTC 1 cut(s) 342
LmnI GCTCC 1 cut(s) 96
LpnPI CCDG 3 cut(s) 138, 606, 674
LweI GCATC 3 cut(s) 418, 514, 624
MaeI CTAG 4 cut(s) 278, 384, 402, 491
MaeIII GTNAC 1 cut(s) 309
MalI GATC 7 cut(s) 25, 186, 265, 293, 443, 501, 833
MboI GATC 7 cut(s) 23, 184, 263, 291, 441, 499, 831
MhlI GDGCHC 1 cut(s) 757
MluCI AATT 2 cut(s) 437, 764
MlyI GAGTC 4 cut(s) 113, 125, 362, 654
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 5 cut(s) 49, 137, 581, 724, 763
Mph1103I ATGCAT 1 cut(s) 245
MseI TTAA 2 cut(s) 675, 822
MwoI GCNNNNNNNGC 3 cut(s) 88, 502, 792
NdeI CATATG 1 cut(s) 284
NdeII GATC 7 cut(s) 23, 184, 263, 291, 441, 499, 831
NlaIII CATG 7 cut(s) 102, 247, 310, 329, 556, 657, 686
NlaIV GGNNCC 1 cut(s) 92
NsiI ATGCAT 1 cut(s) 245
NspI RCATGY 3 cut(s) 329, 556, 657
PaeR7I CTCGAG 1 cut(s) 370
PceI AGGCCT 1 cut(s) 795
PciI ACATGT 2 cut(s) 325, 552
PciSI GCTCTTC 1 cut(s) 342
PfeI GAWTC 3 cut(s) 659, 701, 745
PkrI GCNGC 2 cut(s) 7, 514
PleI GAGTC 4 cut(s) 112, 125, 362, 653
PpsI GAGTC 4 cut(s) 112, 125, 362, 653
PscI ACATGT 2 cut(s) 325, 552
PshBI ATTAAT 1 cut(s) 675
PspN4I GGNNCC 1 cut(s) 92
PspXI VCTCGAGB 1 cut(s) 370
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SapI GCTCTTC 1 cut(s) 342
SaqAI TTAA 2 cut(s) 675, 822
SatI GCNGC 2 cut(s) 6, 513
Sau3AI GATC 7 cut(s) 23, 184, 263, 291, 441, 499, 831
SchI GAGTC 4 cut(s) 113, 125, 362, 654
SduI GDGCHC 1 cut(s) 757
SetI ASST 9 cut(s) 35, 50, 84, 148, 216, 276, 407, 690, 847
SfaNI GCATC 3 cut(s) 418, 514, 624
SfcI CTRYAG 1 cut(s) 139
Sfr274I CTCGAG 1 cut(s) 370
SlaI CTCGAG 1 cut(s) 370
SmlI CTYRAG 3 cut(s) 370, 663, 797
SmoI CTYRAG 3 cut(s) 370, 663, 797
Sse9I AATT 2 cut(s) 437, 764
SseBI AGGCCT 1 cut(s) 795
SsiI CCGC 1 cut(s) 513
SspMI CTAG 4 cut(s) 278, 384, 402, 491
StuI AGGCCT 1 cut(s) 795
TaaI ACNGT 3 cut(s) 17, 64, 450
TaqI TCGA 2 cut(s) 371, 532
TasI AATT 2 cut(s) 437, 764
TauI GCSGC 1 cut(s) 515
TfiI GAWTC 3 cut(s) 659, 701, 745
Tru1I TTAA 2 cut(s) 675, 822
Tru9I TTAA 2 cut(s) 675, 822
TscAI CASTG 1 cut(s) 522
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 3 cut(s) 102, 295, 434
TspRI CASTG 1 cut(s) 522
VneI GTGCAC 1 cut(s) 753
VspI ATTAAT 1 cut(s) 675
XagI CCTNNNNNAGG 1 cut(s) 43
XbaI TCTAGA 2 cut(s) 277, 490
XceI RCATGY 3 cut(s) 329, 556, 657
XhoI CTCGAG 1 cut(s) 370
XmiI GTMKAC 1 cut(s) 107
XspI CTAG 4 cut(s) 278, 384, 402, 491
Zsp2I ATGCAT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.