Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008442.1

Orthogroup ID

OG0004261

Physical Location & Seq

Genomic Coordinates Reverse (-)

50398 .. 51267

Gene Structure 870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008442.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

atggctgccaagtaccatgtcagatcaatcagcttgccttcaaggtctcacccaacaactgttagagttgaagaagagctcagcaggctccaatcatgggagtcaatttcatctgcttcaacatcagactcaatctgcggaggtctatctggtcttgaagagctgtatgattgtgttgatgatcttctccaaatggcatcaacccaacagctactctctcaacaccaacaagtgaaatacatggatgagttgttggatggatcagtgaagcttctagacatatgtgggatcacaagggatttcatgttacaagtcaaagaacatgtctttgctcttcaggctgctcttaggaggagaaagggagactcgagcattgaaactagcattgccaactacactagcttcagcaagaaaatgaagaaggatgccaagaaattgatctcacagttgaaacaagcagacatcaagattgggtcatcgcaacttctagagcaagatcagcatcttgccgcagtgattagggttcttcgacaagtttgtgcaaagaacatgtccatcttccaatccctcttggtgttcttggctgttccagtttccaagtcaaacaagtggtctttggtatcaaagttgatgcacaaaggagtcgtagcatgtgaatctcaggcagacattaaagggcatgagttggatggtgtgaattctgctctatcctcactatgcaaatcttctgaagttgagaagattcaaattgcacatcagaaattggaggctttggaagtctgcattgaaggtcttgagaatggtttggaaagcgtatttaggcgcttgatcaaaacaagagcttctctattgaacataatctcgcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF241

Protein Analysis

289

Amino Acids

32.09

Weight (kDa)

8.4

Isoelectric Point (pI)

57.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17680 AT4G35690 AT4G35710
fragaria_vesca	FvH4_1g10690 FvH4_1g10710
malus_domestica	MD02G1120800.v1.1 MD02G1121000.v1.1 MD15G1234800.v1.1 MD15G1234900.v1.1
prunus_persica	Prupe.7G178200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0097861 RchiOBHm_Chr2g0097871
rosa_laevigata	RLG00000016741
rosa_multiflora	Rmu_co8105842.1_g000001 Rmu_sc0000974.1_g000030 Rmu_sc0008442.1_g000014 Rmu_sc0008442.1_g000017 Rmu_sc0020316.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144480 Rroxscaffold_2G00144520
rosa_rugosa	Rorug02G0068800 Rorug02G0068900
rosa_samantha	Rh2AG115400 Rh2AG115600 Rh2BG118400 Rh2BG118500 Rh2CG119900 Rh2CG120000 Rh2DG119700 Rh2DG119800
rosa_wichuraiana	Rw2G009020 Rw2G009040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	138, 510
AclWI	GGATC	2 cut(s)	268, 296
AcsI	RAATTY	1 cut(s)	697
AcuI	CTGAAG	3 cut(s)	320, 388, 750
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	1 cut(s)	97
AflIII	ACRYGT	2 cut(s)	322, 549
AgsI	TTSAA	9 cut(s)	42, 71, 120, 158, 377, 451, 746, 788, 853
AluBI	AGCT	7 cut(s)	33, 79, 163, 211, 271, 402, 842
AluI	AGCT	7 cut(s)	33, 79, 163, 211, 271, 402, 842
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	2 cut(s)	51, 357
AlwI	GGATC	2 cut(s)	268, 296
Ama87I	CYCGRG	1 cut(s)	367
ApeKI	GCWGC	2 cut(s)	5, 341
ApoI	RAATTY	1 cut(s)	697
ArsI	GACNNNNNNTTYG	6 cut(s)	309, 341, 536, 568, 596, 628
AspLEI	GCGC	1 cut(s)	825
AsuHPI	GGTGA	1 cut(s)	41
AvaI	CYCGRG	1 cut(s)	367
BanII	GRGCYC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	328
BccI	CCATC	3 cut(s)	251, 563, 683
BclI	TGATCA	1 cut(s)	828
BcoDI	GTCTC	2 cut(s)	51, 357
BfaI	CTAG	4 cut(s)	275, 381, 399, 488
BfoI	RGCGCY	1 cut(s)	826
BisI	GCNGC	3 cut(s)	6, 342, 510
BlpI	GCTNAGC	1 cut(s)	80
BlsI	GCNGC	3 cut(s)	7, 343, 511
BmeT110I	CYCGRG	1 cut(s)	367
BmiI	GGNNCC	1 cut(s)	89
BmsI	GCATC	4 cut(s)	206, 415, 511, 621
Bpu1102I	GCTNAGC	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	815
BsaBI	GATNNNNATC	1 cut(s)	501
BsaI	GGTCTC	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse1I	ACTGG	1 cut(s)	590
Bse3DI	GCAATG	1 cut(s)	384
Bse8I	GATNNNNATC	1 cut(s)	501
BseGI	GGATG	4 cut(s)	250, 262, 430, 694
BseJI	GATNNNNATC	1 cut(s)	501
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	2 cut(s)	94, 674
BseNI	ACTGG	1 cut(s)	590
BseRI	GAGGAG	1 cut(s)	367
BseXI	GCAGC	1 cut(s)	328
BsiHKAI	GWGCWC	1 cut(s)	81
BsiHKCI	CYCGRG	1 cut(s)	367
BslI	CCNNNNNNNGG	1 cut(s)	97
BsmAI	GTCTC	2 cut(s)	51, 357
Bso31I	GGTCTC	1 cut(s)	51
BsoBI	CYCGRG	1 cut(s)	367
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	7 cut(s)	23, 181, 260, 288, 438, 496, 828
Bsp1720I	GCTNAGC	1 cut(s)	80
BspACI	CCGC	2 cut(s)	138, 510
BspCNI	CTCAG	2 cut(s)	93, 673
BspLI	GGNNCC	1 cut(s)	89
BspPI	GGATC	2 cut(s)	268, 296
BspQI	GCTCTTC	3 cut(s)	69, 153, 339
BspTNI	GGTCTC	1 cut(s)	51
BsrDI	GCAATG	1 cut(s)	384
BsrI	ACTGG	1 cut(s)	590
BssMI	GATC	7 cut(s)	23, 181, 260, 288, 438, 496, 828
Bst4CI	ACNGT	2 cut(s)	61, 447
Bst6I	CTCTTC	3 cut(s)	69, 153, 339
BstC8I	GCNNGC	2 cut(s)	35, 86
BstDEI	CTNAG	3 cut(s)	80, 347, 660
BstF5I	GGATG	4 cut(s)	250, 262, 430, 694
BstH2I	RGCGCY	1 cut(s)	826
BstHHI	GCGC	1 cut(s)	825
BstKTI	GATC	7 cut(s)	26, 184, 263, 291, 441, 499, 831
BstMAI	GTCTC	2 cut(s)	51, 357
BstMBI	GATC	7 cut(s)	23, 181, 260, 288, 438, 496, 828
BstMWI	GCNNNNNNNGC	3 cut(s)	85, 338, 499
BstNSI	RCATGY	3 cut(s)	326, 553, 654
BstV1I	GCAGC	1 cut(s)	328
BtgZI	GCGATG	1 cut(s)	462
BtsCI	GGATG	4 cut(s)	250, 262, 430, 694
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	2 cut(s)	270, 519
Cac8I	GCNNGC	2 cut(s)	35, 86
CfoI	GCGC	1 cut(s)	825
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	8 cut(s)	17, 96, 241, 304, 323, 550, 651, 680
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	3 cut(s)	80, 347, 660
DpnI	GATC	7 cut(s)	25, 183, 262, 290, 440, 498, 830
DpnII	GATC	7 cut(s)	23, 181, 260, 288, 438, 496, 828
Eam1104I	CTCTTC	3 cut(s)	69, 153, 339
EarI	CTCTTC	3 cut(s)	69, 153, 339
Ecl136II	GAGCTC	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	81
Eco31I	GGTCTC	1 cut(s)	51
Eco53kI	GAGCTC	1 cut(s)	79
Eco57I	CTGAAG	3 cut(s)	320, 388, 750
Eco88I	CYCGRG	1 cut(s)	367
EcoICRI	GAGCTC	1 cut(s)	79
EcoRI	GAATTC	1 cut(s)	697
EcoT38I	GRGCYC	1 cut(s)	81
FaeI	CATG	8 cut(s)	20, 99, 244, 307, 326, 553, 654, 683
FatI	CATG	8 cut(s)	16, 95, 240, 303, 322, 549, 650, 679
FauNDI	CATATG	1 cut(s)	281
FbaI	TGATCA	1 cut(s)	828
Fnu4HI	GCNGC	3 cut(s)	6, 342, 510
FokI	GGATG	4 cut(s)	257, 269, 437, 701
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	3 cut(s)	6, 342, 510
FspBI	CTAG	4 cut(s)	275, 381, 399, 488
GlaI	GCGC	1 cut(s)	824
GluI	GCNGC	3 cut(s)	6, 342, 510
HaeII	RGCGCY	1 cut(s)	826
HhaI	GCGC	1 cut(s)	825
Hin1II	CATG	8 cut(s)	20, 99, 244, 307, 326, 553, 654, 683
Hin6I	GCGC	1 cut(s)	823
HinP1I	GCGC	1 cut(s)	823
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	6 cut(s)	101, 128, 365, 642, 656, 742
HphI	GGTGA	1 cut(s)	41
Hpy188I	TCNGA	4 cut(s)	23, 127, 730, 759
Hpy188III	TCNNGA	5 cut(s)	155, 275, 466, 488, 794
HpyAV	CCTTC	3 cut(s)	48, 415, 782
HpyCH4III	ACNGT	2 cut(s)	61, 447
HpyCH4V	TGCA	5 cut(s)	542, 634, 720, 752, 783
HpyF10VI	GCNNNNNNNGC	3 cut(s)	85, 338, 499
HpyF3I	CTNAG	3 cut(s)	80, 347, 660
Hsp92II	CATG	8 cut(s)	20, 99, 244, 307, 326, 553, 654, 683
HspAI	GCGC	1 cut(s)	823
Ksp22I	TGATCA	1 cut(s)	828
Kzo9I	GATC	7 cut(s)	23, 181, 260, 288, 438, 496, 828
LguI	GCTCTTC	3 cut(s)	69, 153, 339
LmnI	GCTCC	1 cut(s)	93
LpnPI	CCDG	5 cut(s)	70, 135, 323, 603, 647
Lsp1109I	GCAGC	1 cut(s)	328
LweI	GCATC	4 cut(s)	206, 415, 511, 621
MaeI	CTAG	4 cut(s)	275, 381, 399, 488
MaeIII	GTNAC	1 cut(s)	306
MalI	GATC	7 cut(s)	25, 183, 262, 290, 440, 498, 830
MboI	GATC	7 cut(s)	23, 181, 260, 288, 438, 496, 828
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	5 cut(s)	105, 434, 697, 747, 761
MlyI	GAGTC	4 cut(s)	110, 122, 359, 651
MmeI	TCCRAC	2 cut(s)	234, 666
MnlI	CCTC	5 cut(s)	134, 345, 578, 721, 760
MseI	TTAA	1 cut(s)	672
MwoI	GCNNNNNNNGC	3 cut(s)	85, 338, 499
NdeI	CATATG	1 cut(s)	281
NdeII	GATC	7 cut(s)	23, 181, 260, 288, 438, 496, 828
NlaIII	CATG	8 cut(s)	20, 99, 244, 307, 326, 553, 654, 683
NlaIV	GGNNCC	1 cut(s)	89
NspI	RCATGY	3 cut(s)	326, 553, 654
PaeR7I	CTCGAG	1 cut(s)	367
PciI	ACATGT	2 cut(s)	322, 549
PciSI	GCTCTTC	3 cut(s)	69, 153, 339
PfeI	GAWTC	2 cut(s)	656, 742
PkrI	GCNGC	3 cut(s)	7, 343, 511
PleI	GAGTC	4 cut(s)	109, 122, 359, 650
PpsI	GAGTC	4 cut(s)	109, 122, 359, 650
PscI	ACATGT	2 cut(s)	322, 549
Psp124BI	GAGCTC	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	89
PspXI	VCTCGAGB	1 cut(s)	367
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SacI	GAGCTC	1 cut(s)	81
SapI	GCTCTTC	3 cut(s)	69, 153, 339
SaqAI	TTAA	1 cut(s)	672
SatI	GCNGC	3 cut(s)	6, 342, 510
Sau3AI	GATC	7 cut(s)	23, 181, 260, 288, 438, 496, 828
SchI	GAGTC	4 cut(s)	110, 122, 359, 651
SduI	GDGCHC	1 cut(s)	81
SfaNI	GCATC	4 cut(s)	206, 415, 511, 621
Sfr274I	CTCGAG	1 cut(s)	367
SlaI	CTCGAG	1 cut(s)	367
SmlI	CTYRAG	2 cut(s)	367, 794
SmoI	CTYRAG	2 cut(s)	367, 794
Sse9I	AATT	5 cut(s)	105, 434, 697, 747, 761
SsiI	CCGC	2 cut(s)	138, 510
SspMI	CTAG	4 cut(s)	275, 381, 399, 488
SstI	GAGCTC	1 cut(s)	81
TaaI	ACNGT	2 cut(s)	61, 447
TaqI	TCGA	2 cut(s)	368, 529
TasI	AATT	5 cut(s)	105, 434, 697, 747, 761
TauI	GCSGC	1 cut(s)	512
TfiI	GAWTC	2 cut(s)	656, 742
Tru1I	TTAA	1 cut(s)	672
Tru9I	TTAA	1 cut(s)	672
TscAI	CASTG	2 cut(s)	270, 519
TseI	GCWGC	2 cut(s)	5, 341
TspDTI	ATGAA	3 cut(s)	99, 292, 431
TspRI	CASTG	2 cut(s)	270, 519
XapI	RAATTY	1 cut(s)	697
XbaI	TCTAGA	2 cut(s)	274, 487
XceI	RCATGY	3 cut(s)	326, 553, 654
XhoI	CTCGAG	1 cut(s)	367
XspI	CTAG	4 cut(s)	275, 381, 399, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.