MD02G1121000.v1.1

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0004261
Physical Location & Seq
Reverse (-)
9886315 .. 9886770
456 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1121000.v1.1.491

Sequence Viewer

Length: 456 bp
ATGAACAAGGATGCCAAGAAATTAATCACATCTTTGAAACAAGTAGACAATAAAATTACAACATCACCACTTCTTGAGCAAGATCACCATCTCACTGCGGTGATTCGAGTTCTTAGAGAAGTTTGTGTGAAGAACATGTCTATCTTCCAATCCCTCTTGGTCTTTTTAGCAGTTCCAGTTTCAAAGTCAAACAAGTGGTCTTTGGTACCAAAGTTCATGCGCAAAGGAGTGATAACATGTGAAGATCAGAAGGAGTACATTAATGGCCATGAGTTTGATGGTGTTGATGCTGCTCTATACAATCTATGCAAATCATCAACTGCTACATTTGAATGTGCAAATAAAAGATCGGAAGCTTTGGAAGTAACCATTGAAGGACTTGAGAATGGTTTAGAGAGCGTTTTTAGGTGCATGATTATAACAAGAGCTTCTCTTTTGAACATAATCTCACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

152

Amino Acids

16.96

Weight (kDa)

8.27

Isoelectric Point (pI)

49.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 1 - 148 2.6e-40 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 419
Acc16I TGCGCA 1 cut(s) 221
Acc65I GGTACC 1 cut(s) 205
AccB1I GGYRCC 1 cut(s) 205
AccI GTMKAC 1 cut(s) 45
AciI CCGC 1 cut(s) 98
AcoI YGGCCR 1 cut(s) 265
AfaI GTAC 2 cut(s) 207, 257
AflIII ACRYGT 2 cut(s) 135, 236
AgsI TTSAA 5 cut(s) 37, 183, 332, 374, 439
AleI CACNNNNGTG 1 cut(s) 98
AluBI AGCT 2 cut(s) 356, 428
AluI AGCT 2 cut(s) 356, 428
AoxI GGCC 1 cut(s) 265
ApeKI GCWGC 1 cut(s) 290
ArsI GACNNNNNNTTYG 2 cut(s) 182, 214
AseI ATTAAT 2 cut(s) 23, 261
Asp718I GGTACC 1 cut(s) 205
AspLEI GCGC 1 cut(s) 222
AsuHPI GGTGA 3 cut(s) 57, 77, 112
BaeI ACNNNNGTAYC 2 cut(s) 197, 230
BalI TGGCCA 1 cut(s) 267
BanI GGYRCC 1 cut(s) 205
BbvI GCAGC 1 cut(s) 277
BccI CCATC 2 cut(s) 96, 272
BisI GCNGC 1 cut(s) 291
BlsI GCNGC 1 cut(s) 292
BmiI GGNNCC 1 cut(s) 207
BmsI GCATC 1 cut(s) 277
BpuEI CTTGAG 2 cut(s) 95, 401
BsaBI GATNNNNATC 1 cut(s) 87
Bse1I ACTGG 1 cut(s) 176
Bse8I GATNNNNATC 1 cut(s) 87
BseGI GGATG 1 cut(s) 16
BseJI GATNNNNATC 1 cut(s) 87
BseNI ACTGG 1 cut(s) 176
BseXI GCAGC 1 cut(s) 277
BshFI GGCC 1 cut(s) 267
BshNI GGYRCC 1 cut(s) 205
BsnI GGCC 1 cut(s) 267
Bsp143I GATC 3 cut(s) 82, 244, 347
BspACI CCGC 1 cut(s) 98
BspANI GGCC 1 cut(s) 267
BspLI GGNNCC 1 cut(s) 207
BspT107I GGYRCC 1 cut(s) 205
BsrI ACTGG 1 cut(s) 176
BssMI GATC 3 cut(s) 82, 244, 347
BstDEI CTNAG 1 cut(s) 113
BstF5I GGATG 1 cut(s) 16
BstHHI GCGC 1 cut(s) 222
BstKTI GATC 3 cut(s) 85, 247, 350
BstMBI GATC 3 cut(s) 82, 244, 347
BstNSI RCATGY 2 cut(s) 139, 240
BstV1I GCAGC 1 cut(s) 277
BsuRI GGCC 1 cut(s) 267
BtsCI GGATG 1 cut(s) 16
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 93
CfoI GCGC 1 cut(s) 222
Csp6I GTAC 2 cut(s) 206, 256
CviAII CATG 5 cut(s) 136, 217, 237, 269, 412
CviJI RGCY 3 cut(s) 267, 356, 428
CviKI_1 RGCY 3 cut(s) 267, 356, 428
CviQI GTAC 2 cut(s) 206, 256
DdeI CTNAG 1 cut(s) 113
DpnI GATC 3 cut(s) 84, 246, 349
DpnII GATC 3 cut(s) 82, 244, 347
EaeI YGGCCR 1 cut(s) 265
FaeI CATG 5 cut(s) 139, 220, 240, 272, 415
FaiI YATR 9 cut(s) 137, 218, 238, 270, 298, 307, 413, 419, 443
FatI CATG 5 cut(s) 135, 216, 236, 268, 411
FblI GTMKAC 1 cut(s) 45
Fnu4HI GCNGC 1 cut(s) 291
FokI GGATG 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 291
FspI TGCGCA 1 cut(s) 221
GlaI GCGC 1 cut(s) 221
GluI GCNGC 1 cut(s) 291
HaeIII GGCC 1 cut(s) 267
HhaI GCGC 1 cut(s) 222
Hin1II CATG 5 cut(s) 139, 220, 240, 272, 415
Hin6I GCGC 1 cut(s) 220
HinP1I GCGC 1 cut(s) 220
HindIII AAGCTT 1 cut(s) 354
HinfI GANTC 1 cut(s) 103
HphI GGTGA 3 cut(s) 57, 77, 112
Hpy166II GTNNAC 1 cut(s) 46
Hpy188I TCNGA 2 cut(s) 249, 352
Hpy188III TCNNGA 1 cut(s) 74
Hpy8I GTNNAC 1 cut(s) 46
HpyAV CCTTC 2 cut(s) 244, 368
HpyCH4V TGCA 3 cut(s) 309, 338, 411
HpyF3I CTNAG 1 cut(s) 113
Hsp92II CATG 5 cut(s) 139, 220, 240, 272, 415
HspAI GCGC 1 cut(s) 220
KpnI GGTACC 1 cut(s) 209
Kzo9I GATC 3 cut(s) 82, 244, 347
LpnPI CCDG 1 cut(s) 189
Lsp1109I GCAGC 1 cut(s) 277
LweI GCATC 1 cut(s) 277
MaeIII GTNAC 1 cut(s) 364
MalI GATC 3 cut(s) 84, 246, 349
MboI GATC 3 cut(s) 82, 244, 347
MboII GAAGA 3 cut(s) 136, 142, 254
MlsI TGGCCA 1 cut(s) 267
MluCI AATT 2 cut(s) 20, 54
MluNI TGGCCA 1 cut(s) 267
MnlI CCTC 1 cut(s) 164
Mox20I TGGCCA 1 cut(s) 267
MscI TGGCCA 1 cut(s) 267
MseI TTAA 2 cut(s) 23, 261
MslI CAYNNNNRTG 2 cut(s) 98, 331
Msp20I TGGCCA 1 cut(s) 267
NdeII GATC 3 cut(s) 82, 244, 347
NlaIII CATG 5 cut(s) 139, 220, 240, 272, 415
NlaIV GGNNCC 1 cut(s) 207
NsbI TGCGCA 1 cut(s) 221
NspI RCATGY 2 cut(s) 139, 240
OliI CACNNNNGTG 1 cut(s) 98
PciI ACATGT 2 cut(s) 135, 236
PfeI GAWTC 1 cut(s) 103
PkrI GCNGC 1 cut(s) 292
PscI ACATGT 2 cut(s) 135, 236
PshBI ATTAAT 2 cut(s) 23, 261
PsiI TTATAA 1 cut(s) 419
PspN4I GGNNCC 1 cut(s) 207
RsaI GTAC 2 cut(s) 207, 257
RsaNI GTAC 2 cut(s) 206, 256
RseI CAYNNNNRTG 2 cut(s) 98, 331
SaqAI TTAA 2 cut(s) 23, 261
SatI GCNGC 1 cut(s) 291
Sau3AI GATC 3 cut(s) 82, 244, 347
SetI ASST 3 cut(s) 358, 410, 430
SfaNI GCATC 1 cut(s) 277
SmiMI CAYNNNNRTG 2 cut(s) 98, 331
SmlI CTYRAG 2 cut(s) 74, 380
SmoI CTYRAG 2 cut(s) 74, 380
Sse9I AATT 2 cut(s) 20, 54
SsiI CCGC 1 cut(s) 98
TaqI TCGA 1 cut(s) 106
TasI AATT 2 cut(s) 20, 54
TatI WGTACW 1 cut(s) 255
TfiI GAWTC 1 cut(s) 103
Tru1I TTAA 2 cut(s) 23, 261
Tru9I TTAA 2 cut(s) 23, 261
TscAI CASTG 1 cut(s) 100
TseI GCWGC 1 cut(s) 290
TspDTI ATGAA 2 cut(s) 17, 205
TspRI CASTG 1 cut(s) 100
VspI ATTAAT 2 cut(s) 23, 261
XceI RCATGY 2 cut(s) 139, 240
XcmI CCANNNNNNNNNTGG 1 cut(s) 275
XmiI GTMKAC 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.