Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004261

Physical Location & Seq

Genomic Coordinates Forward (+)

5859973 .. 5861210

Gene Structure 1238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g10710.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGCAGCCAAGTACCATGTCAGATCAATCAGCTTGCCTACAAGGTCTCACCCAACAACTGTTAGAGTTGAGGAAGAGCTCGGCAGGCTACAATCATGGGAGTCGACTTCATCTGCTTCAACATCCGACTCAATCTTGAGAGGTCTATCTGGTCTTGAAGAGTTGTATGATTGTGTTGATGATCTTCTCCAAATGGCATCAACCCAACAGCTACTCTCTCAACACCAACAAGAGAAATGCATGGATGAGTTGTTGGATGGATCAGTGAAGCTTCTAGACATATGTGGAATCACAAGGGATTTCATGTTACAAGTCAAAGAACATGTCTTTGCTCTTCAATCTGCTCTTAGAAGAAGAAAGGGAGACTCGAGCATTGAAACCAGCATCGCCAGCTACACTAGCTTCAGCAAGAAAATGAAGAAGGATGCCAAGAAATTGATCTCACAATTGAAACAAGCAGACAGCAAGATTGTATCATCACAATCTCTGGAGCAAGATCAGCATCTCGCTGCAGTGATTAGGGTTCTTCGACAAGTTTGTGCAAAGAACATGTCCATCTTCCAATCCCTCTTGGTGTTCTTGGCAGTTCCAGTTTCCAAGTCAAACAGGTGGTCTTTGGTGTCAAAGTTGATGCACAAAGGAGTCGTAGCATGTGAAACTCAAGTAAACATTAACGGGCATGAATTGGATGGTGTGGATTCTGTTCTATCCTCACTATGCAAATCTGCTGAAGTTGAGAAGATTCAAAGTGCACAGAAGAAATTGGAGGCTTTGGAAGTCTGCATTGAAGGCCTCGAGAGTGGTCTGGAAAGCGTATTCAAGCGCTTGATCAAAACAAGAGCCTCCCTTTTGAACATAATCTCACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF241

Protein Analysis

290

Amino Acids

32.1

Weight (kDa)

8.41

Isoelectric Point (pI)

62.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BPS1	PF03087	48 - 286	5.4e-90	Protein BPS1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17680 AT4G35690 AT4G35710
fragaria_vesca	FvH4_1g10690 FvH4_1g10710
malus_domestica	MD02G1120800.v1.1 MD02G1121000.v1.1 MD15G1234800.v1.1 MD15G1234900.v1.1
prunus_persica	Prupe.7G178200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0097861 RchiOBHm_Chr2g0097871
rosa_laevigata	RLG00000016741
rosa_multiflora	Rmu_co8105842.1_g000001 Rmu_sc0000974.1_g000030 Rmu_sc0008442.1_g000014 Rmu_sc0008442.1_g000017 Rmu_sc0020316.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144480 Rroxscaffold_2G00144520
rosa_rugosa	Rorug02G0068800 Rorug02G0068900
rosa_samantha	Rh2AG115400 Rh2AG115600 Rh2BG118400 Rh2BG118500 Rh2CG119900 Rh2CG120000 Rh2DG119700 Rh2DG119800
rosa_wichuraiana	Rw2G009020 Rw2G009040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	104
AclWI	GGATC	1 cut(s)	268
AcuI	CTGAAG	2 cut(s)	388, 750
AfaI	GTAC	1 cut(s)	14
AfeI	AGCGCT	1 cut(s)	824
AflIII	ACRYGT	2 cut(s)	322, 549
AgsI	TTSAA	9 cut(s)	120, 158, 338, 377, 451, 746, 788, 820, 853
AluBI	AGCT	6 cut(s)	33, 79, 211, 271, 393, 402
AluI	AGCT	6 cut(s)	33, 79, 211, 271, 393, 402
Alw21I	GWGCWC	2 cut(s)	81, 754
Alw26I	GTCTC	2 cut(s)	51, 357
Alw44I	GTGCAC	1 cut(s)	750
AlwI	GGATC	1 cut(s)	268
Ama87I	CYCGRG	2 cut(s)	367, 794
Aor51HI	AGCGCT	1 cut(s)	824
AoxI	GGCC	1 cut(s)	790
ApaLI	GTGCAC	1 cut(s)	750
ApeKI	GCWGC	2 cut(s)	5, 509
ArsI	GACNNNNNNTTYG	6 cut(s)	309, 341, 536, 568, 596, 628
AspLEI	GCGC	1 cut(s)	825
AsuHPI	GGTGA	1 cut(s)	41
AvaI	CYCGRG	2 cut(s)	367, 794
BaeGI	GKGCMC	1 cut(s)	754
BanII	GRGCYC	1 cut(s)	81
Bbv12I	GWGCWC	2 cut(s)	81, 754
BbvI	GCAGC	2 cut(s)	17, 496
BccI	CCATC	3 cut(s)	251, 563, 683
BclI	TGATCA	1 cut(s)	828
BcoDI	GTCTC	2 cut(s)	51, 357
BfaI	CTAG	2 cut(s)	275, 399
BfmI	CTRYAG	1 cut(s)	510
BfoI	RGCGCY	1 cut(s)	826
BisI	GCNGC	2 cut(s)	6, 510
BlsI	GCNGC	2 cut(s)	7, 511
BmeT110I	CYCGRG	2 cut(s)	367, 794
BmsI	GCATC	5 cut(s)	206, 393, 415, 511, 621
BpmI	CTGGAG	1 cut(s)	509
BpuEI	CTTGAG	2 cut(s)	157, 645
BsaBI	GATNNNNATC	1 cut(s)	501
BsaI	GGTCTC	1 cut(s)	51
Bse1I	ACTGG	1 cut(s)	590
Bse8I	GATNNNNATC	1 cut(s)	501
BseGI	GGATG	5 cut(s)	122, 250, 262, 430, 694
BseJI	GATNNNNATC	1 cut(s)	501
BseNI	ACTGG	1 cut(s)	590
BseSI	GKGCMC	1 cut(s)	754
BseXI	GCAGC	2 cut(s)	17, 496
BshFI	GGCC	1 cut(s)	792
BsiHKAI	GWGCWC	2 cut(s)	81, 754
BsiHKCI	CYCGRG	2 cut(s)	367, 794
BsmAI	GTCTC	2 cut(s)	51, 357
BsnI	GGCC	1 cut(s)	792
Bso31I	GGTCTC	1 cut(s)	51
BsoBI	CYCGRG	2 cut(s)	367, 794
Bsp1286I	GDGCHC	2 cut(s)	81, 754
Bsp143I	GATC	6 cut(s)	23, 181, 260, 438, 496, 828
BspANI	GGCC	1 cut(s)	792
BspMAI	CTGCAG	1 cut(s)	514
BspPI	GGATC	1 cut(s)	268
BspQI	GCTCTTC	2 cut(s)	69, 339
BspTNI	GGTCTC	1 cut(s)	51
BsrI	ACTGG	1 cut(s)	590
BssMI	GATC	6 cut(s)	23, 181, 260, 438, 496, 828
Bst4CI	ACNGT	1 cut(s)	61
Bst6I	CTCTTC	3 cut(s)	69, 153, 339
BstC8I	GCNNGC	3 cut(s)	35, 86, 391
BstDEI	CTNAG	1 cut(s)	347
BstF5I	GGATG	5 cut(s)	122, 250, 262, 430, 694
BstH2I	RGCGCY	1 cut(s)	826
BstHHI	GCGC	1 cut(s)	825
BstKTI	GATC	6 cut(s)	26, 184, 263, 441, 499, 831
BstMAI	GTCTC	2 cut(s)	51, 357
BstMBI	GATC	6 cut(s)	23, 181, 260, 438, 496, 828
BstMWI	GCNNNNNNNGC	5 cut(s)	85, 390, 399, 499, 789
BstNSI	RCATGY	3 cut(s)	326, 553, 654
BstSFI	CTRYAG	1 cut(s)	510
BstSLI	GKGCMC	1 cut(s)	754
BstV1I	GCAGC	2 cut(s)	17, 496
BsuRI	GGCC	1 cut(s)	792
BtgZI	GCGATG	1 cut(s)	370
BtsCI	GGATG	5 cut(s)	122, 250, 262, 430, 694
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	2 cut(s)	270, 519
Cac8I	GCNNGC	3 cut(s)	35, 86, 391
CfoI	GCGC	1 cut(s)	825
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	8 cut(s)	17, 96, 241, 304, 323, 550, 651, 680
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	1 cut(s)	347
DpnI	GATC	6 cut(s)	25, 183, 262, 440, 498, 830
DpnII	GATC	6 cut(s)	23, 181, 260, 438, 496, 828
Eam1104I	CTCTTC	3 cut(s)	69, 153, 339
EarI	CTCTTC	3 cut(s)	69, 153, 339
Ecl136II	GAGCTC	1 cut(s)	79
Eco147I	AGGCCT	1 cut(s)	792
Eco24I	GRGCYC	1 cut(s)	81
Eco31I	GGTCTC	1 cut(s)	51
Eco47III	AGCGCT	1 cut(s)	824
Eco53kI	GAGCTC	1 cut(s)	79
Eco57I	CTGAAG	2 cut(s)	388, 750
Eco88I	CYCGRG	2 cut(s)	367, 794
EcoICRI	GAGCTC	1 cut(s)	79
EcoT22I	ATGCAT	1 cut(s)	242
EcoT38I	GRGCYC	1 cut(s)	81
FaeI	CATG	8 cut(s)	20, 99, 244, 307, 326, 553, 654, 683
FatI	CATG	8 cut(s)	16, 95, 240, 303, 322, 549, 650, 679
FauNDI	CATATG	1 cut(s)	281
FbaI	TGATCA	1 cut(s)	828
FblI	GTMKAC	1 cut(s)	104
Fnu4HI	GCNGC	2 cut(s)	6, 510
FokI	GGATG	5 cut(s)	109, 257, 269, 437, 701
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	2 cut(s)	6, 510
FspBI	CTAG	2 cut(s)	275, 399
GlaI	GCGC	1 cut(s)	824
GluI	GCNGC	2 cut(s)	6, 510
GsuI	CTGGAG	1 cut(s)	509
HaeII	RGCGCY	1 cut(s)	826
HaeIII	GGCC	1 cut(s)	792
HhaI	GCGC	1 cut(s)	825
Hin1II	CATG	8 cut(s)	20, 99, 244, 307, 326, 553, 654, 683
Hin6I	GCGC	1 cut(s)	823
HinP1I	GCGC	1 cut(s)	823
HincII	GTYRAC	1 cut(s)	105
HindII	GTYRAC	1 cut(s)	105
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	7 cut(s)	101, 128, 288, 365, 642, 698, 742
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	3 cut(s)	105, 667, 752
Hpy188I	TCNGA	2 cut(s)	23, 127
Hpy188III	TCNNGA	6 cut(s)	136, 155, 275, 488, 796, 806
Hpy8I	GTNNAC	3 cut(s)	105, 667, 752
HpyAV	CCTTC	2 cut(s)	415, 782
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4V	TGCA	7 cut(s)	240, 512, 542, 634, 720, 752, 783
HpyF10VI	GCNNNNNNNGC	5 cut(s)	85, 390, 399, 499, 789
HpyF3I	CTNAG	1 cut(s)	347
Hsp92II	CATG	8 cut(s)	20, 99, 244, 307, 326, 553, 654, 683
HspAI	GCGC	1 cut(s)	823
Ksp22I	TGATCA	1 cut(s)	828
Kzo9I	GATC	6 cut(s)	23, 181, 260, 438, 496, 828
LguI	GCTCTTC	2 cut(s)	69, 339
LmnI	GCTCC	1 cut(s)	490
LpnPI	CCDG	8 cut(s)	70, 135, 394, 403, 473, 592, 603, 791
Lsp1109I	GCAGC	2 cut(s)	17, 496
LweI	GCATC	5 cut(s)	206, 393, 415, 511, 621
MaeI	CTAG	2 cut(s)	275, 399
MaeIII	GTNAC	1 cut(s)	306
MalI	GATC	6 cut(s)	25, 183, 262, 440, 498, 830
MboI	GATC	6 cut(s)	23, 181, 260, 438, 496, 828
MfeI	CAATTG	1 cut(s)	446
MhlI	GDGCHC	2 cut(s)	81, 754
MluCI	AATT	4 cut(s)	434, 446, 683, 761
MlyI	GAGTC	4 cut(s)	110, 122, 359, 651
MmeI	TCCRAC	2 cut(s)	150, 234
MnlI	CCTC	7 cut(s)	64, 134, 578, 721, 760, 803, 853
Mph1103I	ATGCAT	1 cut(s)	242
MseI	TTAA	1 cut(s)	672
MunI	CAATTG	1 cut(s)	446
MwoI	GCNNNNNNNGC	5 cut(s)	85, 390, 399, 499, 789
NdeI	CATATG	1 cut(s)	281
NdeII	GATC	6 cut(s)	23, 181, 260, 438, 496, 828
NlaIII	CATG	8 cut(s)	20, 99, 244, 307, 326, 553, 654, 683
NmeAIII	GCCGAG	1 cut(s)	60
NsiI	ATGCAT	1 cut(s)	242
NspI	RCATGY	3 cut(s)	326, 553, 654
PaeR7I	CTCGAG	2 cut(s)	367, 794
PceI	AGGCCT	1 cut(s)	792
PciI	ACATGT	2 cut(s)	322, 549
PciSI	GCTCTTC	2 cut(s)	69, 339
PfeI	GAWTC	3 cut(s)	288, 698, 742
PkrI	GCNGC	2 cut(s)	7, 511
PleI	GAGTC	4 cut(s)	109, 122, 359, 650
PpsI	GAGTC	4 cut(s)	109, 122, 359, 650
PscI	ACATGT	2 cut(s)	322, 549
Psp124BI	GAGCTC	1 cut(s)	81
PspXI	VCTCGAGB	1 cut(s)	367
PstI	CTGCAG	1 cut(s)	514
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SacI	GAGCTC	1 cut(s)	81
SalI	GTCGAC	1 cut(s)	103
SapI	GCTCTTC	2 cut(s)	69, 339
SaqAI	TTAA	1 cut(s)	672
SatI	GCNGC	2 cut(s)	6, 510
Sau3AI	GATC	6 cut(s)	23, 181, 260, 438, 496, 828
SchI	GAGTC	4 cut(s)	110, 122, 359, 651
SduI	GDGCHC	2 cut(s)	81, 754
SetI	ASST	9 cut(s)	35, 47, 81, 145, 213, 273, 395, 404, 611
SfaNI	GCATC	5 cut(s)	206, 393, 415, 511, 621
SfcI	CTRYAG	1 cut(s)	510
Sfr274I	CTCGAG	2 cut(s)	367, 794
SlaI	CTCGAG	2 cut(s)	367, 794
SmlI	CTYRAG	4 cut(s)	136, 367, 660, 794
SmoI	CTYRAG	4 cut(s)	136, 367, 660, 794
Sse9I	AATT	4 cut(s)	434, 446, 683, 761
SseBI	AGGCCT	1 cut(s)	792
SspMI	CTAG	2 cut(s)	275, 399
SstI	GAGCTC	1 cut(s)	81
StuI	AGGCCT	1 cut(s)	792
TaaI	ACNGT	1 cut(s)	61
TaqI	TCGA	4 cut(s)	104, 368, 529, 795
TasI	AATT	4 cut(s)	434, 446, 683, 761
TfiI	GAWTC	3 cut(s)	288, 698, 742
Tru1I	TTAA	1 cut(s)	672
Tru9I	TTAA	1 cut(s)	672
TscAI	CASTG	2 cut(s)	270, 519
TseI	GCWGC	2 cut(s)	5, 509
TspDTI	ATGAA	4 cut(s)	99, 292, 431, 696
TspRI	CASTG	2 cut(s)	270, 519
VneI	GTGCAC	1 cut(s)	750
XbaI	TCTAGA	1 cut(s)	274
XceI	RCATGY	3 cut(s)	326, 553, 654
XhoI	CTCGAG	2 cut(s)	367, 794
XmiI	GTMKAC	1 cut(s)	104
XspI	CTAG	2 cut(s)	275, 399
Zsp2I	ATGCAT	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.