Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002216

Physical Location & Seq

Genomic Coordinates Reverse (-)

7755605 .. 7757929

Gene Structure 2325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G17840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGGAATCCTCCGGCGACAAGCAAACTTCTTCTCTTTACCCTACTGTTGACACATCCAATCCCGAAGCTCCTATAAACCCTAGCTCATCATCTTCTACTAACAATCTCTATCCTTCTCTCGATATGAATGATCTCGCTCGTAATCTCTTCCCTGAACAACCAGAGACGAGTTCTATTCCGGTTTCAGCTCCTCCCGCTGCGACGGAGGAAGTAATTTTGAAAATCTCCGGCGCGATTCTTCATTTAATCGACAAATCTTACAGCGTCGAGCTCGCTTGCGGTGATCTTGAGATCATCCGTATTGTTCAAGGAGAGAATGTTGTCGCTGTTCTCGCTAGTGTCTCCGATGAGATTCAATGGCCGTTGACTAAGGATGAGAACTCTGTCAAGGTCGATGAGTCTCATTACTTCTTCACGCTTCGTCCTACCAAAGAGATCTCACATGATTCAAGCGACGAAGAAGACGGAGATGGAGGGAAAAACACTAACGAGATGTTGAACTACGGACTTACAATTGCTTCTAAAGGTCAAGAGCATTTACTGGTGGAGCTTGAGAAGATCTTGGAGGATTATAGTAGTTTCTCTGTGCAGGAGGTGTCAGAGGAAGCGAAGGAAGCAGGTGAAAAGGTTTTGGATGTGACGGTGGCGAGAGAGACGTCTCCGGTGGAGCTTACTGGGGAAAGGAAAGAGATTGTGGAGAGGCAATGTTCTGCTTATTGGACTACTTTGGCTCCGAATGTGGAGGATTATAGCGGGAAGGCGGCGAAGCTGATTGCAACTGGCTCAGGACATTTGATAAAAGGGATTCTTTGGTGTGGAGATGTGACTATGGATAGGCTTATTTGGGGAAATGGTTTCATGAAAAGGAGGTTGTCAAAGGCTGAGAAGGAGAGTGAAGTTCACCCTGACACCTTGAAAAGAATCAGAAGAGTGAAGAGGATGACCAAAATGACAGAGAGTGTAGCAAACAGCATACTGTCTGGAGTCCTTAAAGTTTCTGGATTCTTCACAAGTTCAGTGGCAAACACCAAAGTAGGAAAGAAATTCTTCAGCCTTCTTCCTGGAGAAGTCATCCTTGCATCTCTTGACGGATTCAATAAGGTCTGTGACGCTGTTGAAGTAGCTGGGAGGAATGTAATGTCAACCTCTTCCACTGTTACAACCGAACTCGTTGATCACAAGTATGGTGGTAAAGCGGCTGAGGCGACAAACGAAGGGCTCGATGCAGCAGGATATGCGCTTGGCACAGCCTGGGTTGCTTTCAAAATAAGAAAGGCTATTAACCCGAAGAGTGTACTCAAGCCTTCGACGCTTGCAAAAACCGCCATTAGATCTGCAGCTTCACAAAAAAAAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006970 GO:0007623 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0016020 GO:0030054 GO:0033993 GO:0042221 GO:0043207 GO:0044464 GO:0048511 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Senescence

Protein Analysis

452

Amino Acids

49.0

Weight (kDa)

5.3

Isoelectric Point (pI)

37.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Senescence	PF06911	257 - 434	2.2e-47	Senescence domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17840 AT2G17840 AT3G51250 AT3G51250 AT4G35985 AT4G35985 AT4G35985
fragaria_vesca	FvH4_1g11540 FvH4_1g11540 FvH4_1g11540 FvH4_1g11540 FvH4_2g01340 FvH4_2g01340 FvH4_2g01340
malus_domestica	MD02G1128400.v1.1 MD10G1123700.v1.1 MD15G1243600.v1.1
prunus_persica	Prupe.7G170600_v2.0.a1 Prupe.8G164100_v2.0.a1
pyrus_communis	pycom10g10590 pycom15g21450
rosa_chinensis	RchiOBHm_Chr2g0099181 RchiOBHm_Chr6g0252261
rosa_laevigata	RLG00000015400 RLG00000016853
rosa_multiflora	Rmu_co7982236.1_g000001 Rmu_sc0006252.1_g000017 Rmu_sc0006878.1_g000002
rosa_roxburghii	Rroxscaffold_2G00143380 Rroxscaffold_7G00216200
rosa_rugosa	Rorug02G0077500 Rorug05G0506500 Rorug05G0506600
rosa_samantha	Rh2AG126400 Rh2BG129600 Rh2CG130600 Rh2DG131000 Rh6AG020300 Rh6BG015900 Rh6CG013100 Rh6DG014400
rosa_wichuraiana	Rw2G009750 Rw6G001670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	608
AatII	GACGTC	1 cut(s)	659
Acc36I	ACCTGC	1 cut(s)	608
AccII	CGCG	1 cut(s)	233
AciI	CCGC	6 cut(s)	195, 279, 753, 761, 1196, 1323
AcoI	YGGCCR	1 cut(s)	359
AcsI	RAATTY	1 cut(s)	1043
AcuI	CTGAAG	1 cut(s)	1033
AcyI	GRCGYC	1 cut(s)	656
AfaI	GTAC	1 cut(s)	1296
AgsI	TTSAA	9 cut(s)	220, 308, 356, 450, 499, 916, 1096, 1118, 1264
AjnI	CCWGG	2 cut(s)	1060, 1250
AluBI	AGCT	9 cut(s)	68, 84, 188, 271, 550, 670, 769, 1124, 1340
AluI	AGCT	9 cut(s)	68, 84, 188, 271, 550, 670, 769, 1124, 1340
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	5 cut(s)	158, 346, 405, 647, 663
AoxI	GGCC	1 cut(s)	359
ApeKI	GCWGC	3 cut(s)	197, 1226, 1337
ApoI	RAATTY	1 cut(s)	1043
Asp700I	GAANNNNTTC	1 cut(s)	1046
AspLEI	GCGC	2 cut(s)	233, 1240
AsuHPI	GGTGA	3 cut(s)	293, 632, 893
BanII	GRGCYC	2 cut(s)	273, 1221
BbsI	GAAGAC	1 cut(s)	468
Bbv12I	GWGCWC	1 cut(s)	273
BbvCI	CCTCAGC	1 cut(s)	1200
BbvI	GCAGC	3 cut(s)	184, 1238, 1349
BccI	CCATC	1 cut(s)	464
BceAI	ACGGC	1 cut(s)	346
BciT130I	CCWGG	2 cut(s)	1062, 1252
BclI	TGATCA	1 cut(s)	1174
BcoDI	GTCTC	5 cut(s)	158, 346, 405, 647, 663
BfaI	CTAG	3 cut(s)	81, 336, 1357
BfmI	CTRYAG	1 cut(s)	1335
BfuAI	ACCTGC	1 cut(s)	608
BglII	AGATCT	3 cut(s)	435, 558, 1331
BisI	GCNGC	5 cut(s)	198, 762, 1197, 1227, 1338
BlsI	GCNGC	5 cut(s)	199, 763, 1198, 1228, 1339
Bme1390I	CCNGG	2 cut(s)	1062, 1252
BmiI	GGNNCC	1 cut(s)	732
BmrFI	CCNGG	2 cut(s)	1062, 1252
BmrI	ACTGGG	1 cut(s)	684
BmsI	GCATC	2 cut(s)	1088, 1213
BmuI	ACTGGG	1 cut(s)	684
BpiI	GAAGAC	1 cut(s)	468
BpmI	CTGGAG	2 cut(s)	1002, 1083
Bpu10I	CCTNAGC	2 cut(s)	784, 1200
BpuEI	CTTGAG	3 cut(s)	308, 572, 1283
BsaHI	GRCGYC	1 cut(s)	656
BsaJI	CCNNGG	1 cut(s)	1251
BsaWI	WCCGGW	2 cut(s)	178, 661
BsaXI	ACNNNNNCTCC	4 cut(s)	303, 333, 715, 745
Bse1I	ACTGG	3 cut(s)	546, 679, 784
Bse3DI	GCAATG	1 cut(s)	710
BseBI	CCWGG	2 cut(s)	1062, 1252
BseDI	CCNNGG	1 cut(s)	1251
BseGI	GGATG	6 cut(s)	53, 294, 379, 640, 945, 1071
BseMI	GCAATG	1 cut(s)	710
BseMII	CTCAG	3 cut(s)	798, 873, 1191
BseNI	ACTGG	3 cut(s)	546, 679, 784
BseRI	GAGGAG	1 cut(s)	180
BseXI	GCAGC	3 cut(s)	184, 1238, 1349
BseYI	CCCAGC	1 cut(s)	1124
BsgI	GTGCAG	1 cut(s)	608
Bsh1236I	CGCG	1 cut(s)	233
BshFI	GGCC	1 cut(s)	361
BsiHKAI	GWGCWC	1 cut(s)	273
BsiSI	CCGG	4 cut(s)	12, 179, 228, 662
BsmAI	GTCTC	5 cut(s)	158, 346, 405, 647, 663
BsmBI	CGTCTC	3 cut(s)	158, 647, 663
BsnI	GGCC	1 cut(s)	361
Bsp1286I	GDGCHC	2 cut(s)	273, 1221
Bsp143I	GATC	7 cut(s)	130, 283, 291, 435, 558, 1174, 1331
BspACI	CCGC	6 cut(s)	195, 279, 753, 761, 1196, 1323
BspANI	GGCC	1 cut(s)	361
BspCNI	CTCAG	3 cut(s)	797, 874, 1192
BspFNI	CGCG	1 cut(s)	233
BspHI	TCATGA	1 cut(s)	858
BspLI	GGNNCC	1 cut(s)	732
BspMAI	CTGCAG	1 cut(s)	1339
BspMI	ACCTGC	1 cut(s)	608
BsrDI	GCAATG	1 cut(s)	710
BsrI	ACTGG	3 cut(s)	546, 679, 784
BssECI	CCNNGG	1 cut(s)	1251
BssMI	GATC	7 cut(s)	130, 283, 291, 435, 558, 1174, 1331
BssNI	GRCGYC	1 cut(s)	656
Bst2UI	CCWGG	2 cut(s)	1062, 1252
Bst4CI	ACNGT	4 cut(s)	46, 643, 978, 1156
Bst6I	CTCTTC	5 cut(s)	152, 922, 929, 1153, 1283
BstACI	GRCGYC	1 cut(s)	656
BstAPI	GCANNNNNTGC	1 cut(s)	1235
BstC8I	GCNNGC	3 cut(s)	273, 277, 1314
BstDEI	CTNAG	4 cut(s)	369, 784, 882, 1200
BstF5I	GGATG	6 cut(s)	53, 294, 379, 640, 945, 1071
BstFNI	CGCG	1 cut(s)	233
BstHHI	GCGC	2 cut(s)	233, 1240
BstKTI	GATC	7 cut(s)	133, 286, 294, 438, 561, 1177, 1334
BstMAI	GTCTC	5 cut(s)	158, 346, 405, 647, 663
BstMBI	GATC	7 cut(s)	130, 283, 291, 435, 558, 1174, 1331
BstMWI	GCNNNNNNNGC	8 cut(s)	194, 332, 614, 1202, 1235, 1256, 1309, 1322
BstNI	CCWGG	2 cut(s)	1062, 1252
BstSCI	CCNGG	2 cut(s)	1060, 1250
BstSFI	CTRYAG	1 cut(s)	1335
BstUI	CGCG	1 cut(s)	233
BstV1I	GCAGC	3 cut(s)	184, 1238, 1349
BstV2I	GAAGAC	1 cut(s)	468
BstX2I	RGATCY	3 cut(s)	435, 558, 1331
BstYI	RGATCY	3 cut(s)	435, 558, 1331
BsuRI	GGCC	1 cut(s)	361
BtsCI	GGATG	6 cut(s)	53, 294, 379, 640, 945, 1071
BtsIMutI	CAGTG	2 cut(s)	1023, 1152
BveI	ACCTGC	1 cut(s)	608
Cac8I	GCNNGC	3 cut(s)	273, 277, 1314
CciI	TCATGA	1 cut(s)	858
CfoI	GCGC	2 cut(s)	233, 1240
CseI	GACGC	3 cut(s)	253, 1118, 1318
Csp6I	GTAC	1 cut(s)	1295
CspCI	CAANNNNNGTGG	4 cut(s)	999, 1034, 1168, 1203
CviAII	CATG	2 cut(s)	443, 859
CviQI	GTAC	1 cut(s)	1295
DdeI	CTNAG	4 cut(s)	369, 784, 882, 1200
DpnI	GATC	7 cut(s)	132, 285, 293, 437, 560, 1176, 1333
DpnII	GATC	7 cut(s)	130, 283, 291, 435, 558, 1174, 1331
EaeI	YGGCCR	1 cut(s)	359
Eam1104I	CTCTTC	5 cut(s)	152, 922, 929, 1153, 1283
EarI	CTCTTC	5 cut(s)	152, 922, 929, 1153, 1283
Ecl136II	GAGCTC	1 cut(s)	271
Eco24I	GRGCYC	2 cut(s)	273, 1221
Eco53kI	GAGCTC	1 cut(s)	271
Eco57I	CTGAAG	1 cut(s)	1033
EcoICRI	GAGCTC	1 cut(s)	271
EcoRII	CCWGG	2 cut(s)	1060, 1250
EcoT38I	GRGCYC	2 cut(s)	273, 1221
Esp3I	CGTCTC	3 cut(s)	158, 647, 663
FaeI	CATG	2 cut(s)	446, 862
FalI	AAGNNNNNCTT	6 cut(s)	792, 824, 1031, 1063, 1059, 1091
FatI	CATG	2 cut(s)	442, 858
FauI	CCCGC	2 cut(s)	202, 746
FbaI	TGATCA	1 cut(s)	1174
Fnu4HI	GCNGC	5 cut(s)	198, 762, 1197, 1227, 1338
FokI	GGATG	6 cut(s)	40, 281, 386, 647, 952, 1058
FriOI	GRGCYC	2 cut(s)	273, 1221
Fsp4HI	GCNGC	5 cut(s)	198, 762, 1197, 1227, 1338
FspBI	CTAG	3 cut(s)	81, 336, 1357
GlaI	GCGC	2 cut(s)	232, 1239
GluI	GCNGC	5 cut(s)	198, 762, 1197, 1227, 1338
GsaI	CCCAGC	1 cut(s)	1128
GsuI	CTGGAG	2 cut(s)	1002, 1083
HaeIII	GGCC	1 cut(s)	361
HapII	CCGG	4 cut(s)	12, 179, 228, 662
HgaI	GACGC	3 cut(s)	253, 1118, 1318
HhaI	GCGC	2 cut(s)	233, 1240
Hin1I	GRCGYC	1 cut(s)	656
Hin1II	CATG	2 cut(s)	446, 862
Hin6I	GCGC	2 cut(s)	231, 1238
HinP1I	GCGC	2 cut(s)	231, 1238
HincII	GTYRAC	3 cut(s)	49, 366, 1143
HindII	GTYRAC	3 cut(s)	49, 366, 1143
HpaII	CCGG	4 cut(s)	12, 179, 228, 662
HphI	GGTGA	3 cut(s)	293, 632, 893
Hpy166II	GTNNAC	5 cut(s)	49, 366, 901, 1143, 1295
Hpy188I	TCNGA	4 cut(s)	346, 601, 735, 926
Hpy188III	TCNNGA	9 cut(s)	62, 119, 287, 530, 786, 859, 981, 999, 1085
Hpy8I	GTNNAC	5 cut(s)	49, 366, 901, 1143, 1295
Hpy99I	CGWCG	4 cut(s)	205, 269, 458, 1312
HpyAV	CCTTC	7 cut(s)	123, 604, 751, 880, 1064, 1208, 1314
HpyCH4III	ACNGT	4 cut(s)	46, 643, 978, 1156
HpyCH4IV	ACGT	1 cut(s)	656
HpyCH4V	TGCA	6 cut(s)	589, 776, 1079, 1226, 1316, 1337
HpyF10VI	GCNNNNNNNGC	8 cut(s)	194, 332, 614, 1202, 1235, 1256, 1309, 1322
HpyF3I	CTNAG	4 cut(s)	369, 784, 882, 1200
HpySE526I	ACGT	1 cut(s)	656
Hsp92I	GRCGYC	1 cut(s)	656
Hsp92II	CATG	2 cut(s)	446, 862
HspAI	GCGC	2 cut(s)	231, 1238
Ksp22I	TGATCA	1 cut(s)	1174
Kzo9I	GATC	7 cut(s)	130, 283, 291, 435, 558, 1174, 1331
LmnI	GCTCC	5 cut(s)	73, 193, 547, 667, 736
Lsp1109I	GCAGC	3 cut(s)	184, 1238, 1349
LweI	GCATC	2 cut(s)	1088, 1213
MaeI	CTAG	3 cut(s)	81, 336, 1357
MaeII	ACGT	1 cut(s)	656
MaeIII	GTNAC	4 cut(s)	637, 823, 1106, 1156
MalI	GATC	7 cut(s)	132, 285, 293, 437, 560, 1176, 1333
MboI	GATC	7 cut(s)	130, 283, 291, 435, 558, 1174, 1331
MfeI	CAATTG	1 cut(s)	513
MflI	RGATCY	3 cut(s)	435, 558, 1331
MhlI	GDGCHC	2 cut(s)	273, 1221
MluCI	AATT	3 cut(s)	213, 513, 1043
MlyI	GAGTC	2 cut(s)	407, 993
MroXI	GAANNNNTTC	1 cut(s)	1046
MseI	TTAA	3 cut(s)	245, 990, 1281
MslI	CAYNNNNRTG	1 cut(s)	1182
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	4 cut(s)	12, 179, 228, 662
MspR9I	CCNGG	2 cut(s)	1062, 1252
MunI	CAATTG	1 cut(s)	513
MvaI	CCWGG	2 cut(s)	1062, 1252
MvnI	CGCG	1 cut(s)	233
MwoI	GCNNNNNNNGC	8 cut(s)	194, 332, 614, 1202, 1235, 1256, 1309, 1322
NdeII	GATC	7 cut(s)	130, 283, 291, 435, 558, 1174, 1331
NlaIII	CATG	2 cut(s)	446, 862
NlaIV	GGNNCC	1 cut(s)	732
NmuCI	GTSAC	3 cut(s)	637, 823, 1106
PagI	TCATGA	1 cut(s)	858
PaqCI	CACCTGC	1 cut(s)	608
PcsI	WCGNNNNNNNCGW	1 cut(s)	1218
PdmI	GAANNNNTTC	1 cut(s)	1046
PfeI	GAWTC	8 cut(s)	5, 235, 352, 446, 805, 921, 1002, 1092
PfoI	TCCNGGA	1 cut(s)	1060
PkrI	GCNGC	5 cut(s)	199, 763, 1198, 1228, 1339
PleI	GAGTC	2 cut(s)	406, 992
PpsI	GAGTC	2 cut(s)	406, 992
Psp124BI	GAGCTC	1 cut(s)	273
Psp6I	CCWGG	2 cut(s)	1060, 1250
PspFI	CCCAGC	1 cut(s)	1124
PspGI	CCWGG	2 cut(s)	1060, 1250
PspN4I	GGNNCC	1 cut(s)	732
PstI	CTGCAG	1 cut(s)	1339
PsuI	RGATCY	3 cut(s)	435, 558, 1331
RsaI	GTAC	1 cut(s)	1296
RsaNI	GTAC	1 cut(s)	1295
RseI	CAYNNNNRTG	1 cut(s)	1182
SacI	GAGCTC	1 cut(s)	273
SaqAI	TTAA	3 cut(s)	245, 990, 1281
SatI	GCNGC	5 cut(s)	198, 762, 1197, 1227, 1338
Sau3AI	GATC	7 cut(s)	130, 283, 291, 435, 558, 1174, 1331
SchI	GAGTC	2 cut(s)	407, 993
ScrFI	CCNGG	2 cut(s)	1062, 1252
SduI	GDGCHC	2 cut(s)	273, 1221
SfaNI	GCATC	2 cut(s)	1088, 1213
SfcI	CTRYAG	1 cut(s)	1335
SmiMI	CAYNNNNRTG	1 cut(s)	1182
SmlI	CTYRAG	3 cut(s)	287, 551, 1298
SmoI	CTYRAG	3 cut(s)	287, 551, 1298
Sse9I	AATT	3 cut(s)	213, 513, 1043
SsiI	CCGC	6 cut(s)	195, 279, 753, 761, 1196, 1323
SspMI	CTAG	3 cut(s)	81, 336, 1357
SstI	GAGCTC	1 cut(s)	273
StyD4I	CCNGG	2 cut(s)	1060, 1250
TaaI	ACNGT	4 cut(s)	46, 643, 978, 1156
TaiI	ACGT	1 cut(s)	659
TaqI	TCGA	6 cut(s)	120, 249, 267, 393, 1221, 1307
TasI	AATT	3 cut(s)	213, 513, 1043
TatI	WGTACW	1 cut(s)	1294
TauI	GCSGC	2 cut(s)	764, 1199
TfiI	GAWTC	8 cut(s)	5, 235, 352, 446, 805, 921, 1002, 1092
Tru1I	TTAA	3 cut(s)	245, 990, 1281
Tru9I	TTAA	3 cut(s)	245, 990, 1281
TscAI	CASTG	2 cut(s)	1023, 1159
TseFI	GTSAC	3 cut(s)	637, 823, 1106
TseI	GCWGC	3 cut(s)	197, 1226, 1337
Tsp45I	GTSAC	3 cut(s)	637, 823, 1106
TspDTI	ATGAA	4 cut(s)	140, 230, 847, 875
TspGWI	ACGGA	5 cut(s)	218, 287, 480, 519, 1104
TspRI	CASTG	2 cut(s)	1023, 1159
XapI	RAATTY	1 cut(s)	1043
XmnI	GAANNNNTTC	1 cut(s)	1046
XspI	CTAG	3 cut(s)	81, 336, 1357
ZraI	GACGTC	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.