Rh2DG131000

Senescence-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002216
Physical Location & Seq
Reverse (-)
11064989 .. 11069160
4172 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG131000.1

Sequence Viewer

Length: 1359 bp
ATGGAGTGCCCCAAGCCTAAACCTAATCGGGTACGCTTTCAAGAACCAATGGAGTCCCCGGACCCTAATCGGAAGCCCAAACTGTACCCGGAGGTCGTCCAATCCAACCCGGAAGCCCCCTCAATGTCGAACCCGAAACCCGAACCGTCGGCCCCAAGTCTCTACCCCTCCCTCGACATGAAGGACCTCGTCGAGGATCTATTCCCGGAGAATCTATCATATTACGAAATCCCGCCGGAAAATCAATTCCCCGATAGCCCGACCTGCCACGAACCGCCGTCGGCGCCGCCCGTCGCCGCCGAGGAGGTTCTTATTAAGATCCCCGGCGCGATCGTTAACCTAATTGATAAGAACTACAGCGTCGAGCTCGCCAGCGGCGACTTCTCGATCGTGCGGCTAGTCCAAGGCGACGACGTCGTTGCGATCCTCGCCCGTGTAGATGATGAGATCCAGTGGCCGCTGTTGAAGGACGAAGGCGTGGTCAAGCTCGACGATTCGCATTACTTTTTCTCGCTGTACGCGCCGGAGGATCATGAGTCGTCGCCGGCGCCGGAGCCGGAGTCCGGCACGGATGGGAAGACGAAGGAGAAGAAGAAGAAGAAGAAGAAGGAGAAAGCGAAGAAGGCTGAGAAGGAAACTAAGGAGGCTGATAATTTCTTGAACTACGGATTGACGATTGCGTCGAAAGGGCAGGAGAAATTGGTGAAGGAATTGGATGAGGTTCTGAAGAGTTACAGCAGTTTTTCGGTGCAGAAGGTTTCGGAGAAGGCGAAGAAGAAGGGGGAGGCGTTGGATAGTTCCCTGGCATTGGAGACGGCGCCGGCGGAGTTGAGTTCGGAGAAGAAGAAGGAGATGAAGGAGCAGAGCGCTGCGTATTGGACCACATTGGCTCCCAATGTGGAGGACTATAATGGGAGTGCTGCTAAGTTGATTGCGGCCGGGACGGGGCAGCTGATCAGGGGGATTTTGTGGTGTGGAGATGTCACGGTGGAGAGGTTGAAATGGGGAAATGAGGTTATGAAGAAGAGGATGGAGCCGGGTTCGAATAAGGAAATCAGTCCCCAAACCATGAGGAGGATCAAAAGGGCCAAGAAAGTGAGCAAAACAACACAAAAAGTAGCAGCCGGTGTCCTCTCTGGGGTTTTGAAAGTTTCTGGATACTTCACAGGTGCGGTGGTGAATTCCAAAGTGGGAAAGAAATTCTTTCGTCTTCTGCCTGGGGAAATTTTGCTTGCTGGGCTGGATGGATTTTGTATGTTTCTCATCTCAATTCCTGGATTTCTCTTGAAACAGATGATACTTGTTCTTCTTTGTCCTTTTAACTTTTCCTTACAACTTCTTATCTTAATCCAACTCTGA

Protein Analysis

452

Amino Acids

50.07

Weight (kDa)

7.51

Isoelectric Point (pI)

42.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence PF06911 310 - 417 1.8e-22 Senescence domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 679
AatII GACGTC 1 cut(s) 417
Acc36I ACCTGC 1 cut(s) 272
AccB1I GGYRCC 3 cut(s) 283, 547, 817
AccII CGCG 2 cut(s) 329, 521
AclWI GGATC 6 cut(s) 204, 313, 418, 442, 537, 1085
AcoI YGGCCR 2 cut(s) 455, 936
AcsI RAATTY 3 cut(s) 1180, 1199, 1224
AcuI CTGAAG 1 cut(s) 746
AcyI GRCGYC 4 cut(s) 284, 414, 548, 818
AfaI GTAC 3 cut(s) 33, 86, 518
AfeI AGCGCT 1 cut(s) 868
AfiI CCNNNNNNNGG 6 cut(s) 193, 563, 808, 945, 1074, 1138
AgsI TTSAA 6 cut(s) 41, 466, 661, 1000, 1147, 1288
AjnI CCWGG 3 cut(s) 801, 1216, 1273
AluBI AGCT 3 cut(s) 367, 487, 952
AluI AGCT 3 cut(s) 367, 487, 952
Alw21I GWGCWC 1 cut(s) 369
Alw26I GTCTC 2 cut(s) 164, 806
AlwI GGATC 6 cut(s) 204, 313, 418, 442, 537, 1085
Aor51HI AGCGCT 1 cut(s) 868
AoxI GGCC 4 cut(s) 150, 455, 936, 1086
ApeKI GCWGC 4 cut(s) 869, 920, 949, 1121
ApoI RAATTY 3 cut(s) 1180, 1199, 1224
ArsI GACNNNNNNTTYG 2 cut(s) 465, 497
AspLEI GCGC 6 cut(s) 286, 329, 523, 550, 820, 869
AspS9I GGNCC 5 cut(s) 61, 151, 184, 879, 1086
AsuC2I CCSGG 7 cut(s) 59, 89, 110, 206, 324, 940, 1038
AsuHPI GGTGA 2 cut(s) 715, 1189
AsuII TTCGAA 1 cut(s) 1043
AvaII GGWCC 3 cut(s) 61, 184, 879
BaeGI GKGCMC 1 cut(s) 11
BanI GGYRCC 3 cut(s) 283, 547, 817
BanII GRGCYC 1 cut(s) 369
BbsI GAAGAC 2 cut(s) 584, 1202
Bbv12I GWGCWC 1 cut(s) 369
BbvI GCAGC 4 cut(s) 856, 907, 961, 1133
BccI CCATC 3 cut(s) 566, 1024, 1238
BceAI ACGGC 2 cut(s) 262, 831
BcgI CGANNNNNNTGC 2 cut(s) 401, 435
BciT130I CCWGG 3 cut(s) 803, 1218, 1275
BciVI GTATCC 1 cut(s) 1151
BclI TGATCA 1 cut(s) 954
BcnI CCSGG 7 cut(s) 59, 89, 110, 206, 324, 940, 1038
BcoDI GTCTC 2 cut(s) 164, 806
BfaI CTAG 1 cut(s) 398
BfmI CTRYAG 1 cut(s) 355
BfoI RGCGCY 4 cut(s) 287, 551, 821, 870
BfuAI ACCTGC 1 cut(s) 272
BfuI GTATCC 1 cut(s) 1151
Bme18I GGWCC 3 cut(s) 61, 184, 879
BmgT120I GGNCC 5 cut(s) 61, 151, 184, 879, 1086
BmiI GGNNCC 8 cut(s) 63, 153, 285, 549, 555, 819, 891, 1035
BpiI GAAGAC 2 cut(s) 584, 1202
Bpu14I TTCGAA 1 cut(s) 1043
BpuMI CCSGG 7 cut(s) 59, 89, 110, 206, 324, 940, 1038
BsaHI GRCGYC 4 cut(s) 284, 414, 548, 818
BsaJI CCNNGG 6 cut(s) 57, 300, 322, 403, 801, 1217
BsaXI ACNNNNNCTCC 4 cut(s) 545, 575, 874, 904
Bsc4I CCNNNNNNNGG 6 cut(s) 193, 563, 808, 945, 1074, 1138
Bse118I RCCGGY 3 cut(s) 544, 820, 1124
Bse1I ACTGG 1 cut(s) 451
BseBI CCWGG 3 cut(s) 803, 1218, 1275
BseDI CCNNGG 6 cut(s) 57, 300, 322, 403, 801, 1217
BseGI GGATG 4 cut(s) 577, 721, 1035, 1249
BseLI CCNNNNNNNGG 6 cut(s) 193, 563, 808, 945, 1074, 1138
BseMII CTCAG 1 cut(s) 618
BseNI ACTGG 1 cut(s) 451
BseRI GAGGAG 2 cut(s) 317, 1087
BseSI GKGCMC 1 cut(s) 11
BseX3I CGGCCG 1 cut(s) 936
BseXI GCAGC 4 cut(s) 856, 907, 961, 1133
BseYI CCCAGC 1 cut(s) 1235
BsgI GTGCAG 1 cut(s) 770
Bsh1236I CGCG 2 cut(s) 329, 521
Bsh1285I CGRYCG 3 cut(s) 333, 390, 939
BshFI GGCC 4 cut(s) 152, 457, 938, 1088
BshNI GGYRCC 3 cut(s) 283, 547, 817
BsiEI CGRYCG 3 cut(s) 333, 390, 939
BsiHKAI GWGCWC 1 cut(s) 369
BslFI GGGAC 3 cut(s) 40, 955, 1044
BslI CCNNNNNNNGG 6 cut(s) 193, 563, 808, 945, 1074, 1138
BsmAI GTCTC 2 cut(s) 164, 806
BsmBI CGTCTC 1 cut(s) 806
BsmFI GGGAC 3 cut(s) 40, 955, 1044
BsnI GGCC 4 cut(s) 152, 457, 938, 1088
Bsp119I TTCGAA 1 cut(s) 1043
Bsp1286I GDGCHC 2 cut(s) 11, 369
Bsp143I GATC 9 cut(s) 196, 318, 330, 387, 423, 447, 529, 954, 1077
BspANI GGCC 4 cut(s) 152, 457, 938, 1088
BspCNI CTCAG 1 cut(s) 619
BspFNI CGCG 2 cut(s) 329, 521
BspHI TCATGA 1 cut(s) 532
BspLI GGNNCC 8 cut(s) 63, 153, 285, 549, 555, 819, 891, 1035
BspMI ACCTGC 1 cut(s) 272
BspPI GGATC 6 cut(s) 204, 313, 418, 442, 537, 1085
BspT104I TTCGAA 1 cut(s) 1043
BspT107I GGYRCC 3 cut(s) 283, 547, 817
BsrFI RCCGGY 3 cut(s) 544, 820, 1124
BsrI ACTGG 1 cut(s) 451
BssAI RCCGGY 3 cut(s) 544, 820, 1124
BssECI CCNNGG 6 cut(s) 57, 300, 322, 403, 801, 1217
BssMI GATC 9 cut(s) 196, 318, 330, 387, 423, 447, 529, 954, 1077
BssNI GRCGYC 4 cut(s) 284, 414, 548, 818
BssT1I CCWWGG 1 cut(s) 403
Bst2UI CCWGG 3 cut(s) 803, 1218, 1275
Bst4CI ACNGT 3 cut(s) 84, 147, 988
Bst6I CTCTTC 2 cut(s) 722, 1019
BstACI GRCGYC 4 cut(s) 284, 414, 548, 818
BstBI TTCGAA 1 cut(s) 1043
BstC8I GCNNGC 5 cut(s) 369, 373, 546, 822, 1233
BstDEI CTNAG 3 cut(s) 627, 639, 924
BstENI CCTNNNNNAGG 1 cut(s) 191
BstF5I GGATG 4 cut(s) 577, 721, 1035, 1249
BstFNI CGCG 2 cut(s) 329, 521
BstH2I RGCGCY 4 cut(s) 287, 551, 821, 870
BstHHI GCGC 6 cut(s) 286, 329, 523, 550, 820, 869
BstKTI GATC 9 cut(s) 199, 321, 333, 390, 426, 450, 532, 957, 1080
BstMAI GTCTC 2 cut(s) 164, 806
BstMBI GATC 9 cut(s) 196, 318, 330, 387, 423, 447, 529, 954, 1077
BstMCI CGRYCG 3 cut(s) 333, 390, 939
BstMWI GCNNNNNNNGC 6 cut(s) 264, 283, 428, 520, 623, 1237
BstNI CCWGG 3 cut(s) 803, 1218, 1275
BstSFI CTRYAG 1 cut(s) 355
BstSLI GKGCMC 1 cut(s) 11
BstUI CGCG 2 cut(s) 329, 521
BstV1I GCAGC 4 cut(s) 856, 907, 961, 1133
BstV2I GAAGAC 2 cut(s) 584, 1202
BstX2I RGATCY 3 cut(s) 196, 318, 447
BstYI RGATCY 3 cut(s) 196, 318, 447
BstZI CGGCCG 1 cut(s) 936
BsuI GTATCC 1 cut(s) 1151
BsuRI GGCC 4 cut(s) 152, 457, 938, 1088
BtsCI GGATG 4 cut(s) 577, 721, 1035, 1249
BtsIMutI CAGTG 1 cut(s) 458
BveI ACCTGC 1 cut(s) 272
Cac8I GCNNGC 5 cut(s) 369, 373, 546, 822, 1233
CciI TCATGA 1 cut(s) 532
CfoI GCGC 6 cut(s) 286, 329, 523, 550, 820, 869
Cfr10I RCCGGY 3 cut(s) 544, 820, 1124
Cfr13I GGNCC 5 cut(s) 61, 151, 184, 879, 1086
CseI GACGC 2 cut(s) 349, 669
Csp6I GTAC 3 cut(s) 32, 85, 517
CviAII CATG 3 cut(s) 178, 533, 1069
CviQI GTAC 3 cut(s) 32, 85, 517
DdeI CTNAG 3 cut(s) 627, 639, 924
DinI GGCGCC 3 cut(s) 285, 549, 819
DpnI GATC 9 cut(s) 198, 320, 332, 389, 425, 449, 531, 956, 1079
DpnII GATC 9 cut(s) 196, 318, 330, 387, 423, 447, 529, 954, 1077
DrdI GACNNNNNNGTC 1 cut(s) 679
DseDI GACNNNNNNGTC 1 cut(s) 679
EaeI YGGCCR 2 cut(s) 455, 936
EagI CGGCCG 1 cut(s) 936
Eam1104I CTCTTC 2 cut(s) 722, 1019
EarI CTCTTC 2 cut(s) 722, 1019
EciI GGCGGA 1 cut(s) 839
Ecl136II GAGCTC 1 cut(s) 367
EclXI CGGCCG 1 cut(s) 936
Eco130I CCWWGG 1 cut(s) 403
Eco24I GRGCYC 1 cut(s) 369
Eco47I GGWCC 3 cut(s) 61, 184, 879
Eco47III AGCGCT 1 cut(s) 868
Eco52I CGGCCG 1 cut(s) 936
Eco53kI GAGCTC 1 cut(s) 367
Eco57I CTGAAG 1 cut(s) 746
EcoICRI GAGCTC 1 cut(s) 367
EcoNI CCTNNNNNAGG 1 cut(s) 191
EcoO109I RGGNCCY 1 cut(s) 184
EcoRI GAATTC 1 cut(s) 1180
EcoRII CCWGG 3 cut(s) 801, 1216, 1273
EcoT14I CCWWGG 1 cut(s) 403
EcoT38I GRGCYC 1 cut(s) 369
EgeI GGCGCC 3 cut(s) 285, 549, 819
EheI GGCGCC 3 cut(s) 285, 549, 819
ErhI CCWWGG 1 cut(s) 403
Esp3I CGTCTC 1 cut(s) 806
FaeI CATG 3 cut(s) 181, 536, 1072
FaiI YATR 7 cut(s) 179, 220, 534, 909, 1019, 1070, 1256
FalI AAGNNNNNCTT 2 cut(s) 1187, 1219
FaqI GGGAC 3 cut(s) 40, 955, 1044
FatI CATG 3 cut(s) 177, 532, 1068
FauI CCCGC 1 cut(s) 240
FbaI TGATCA 1 cut(s) 954
FokI GGATG 4 cut(s) 584, 728, 1042, 1256
FriOI GRGCYC 1 cut(s) 369
FspBI CTAG 1 cut(s) 398
GlaI GCGC 6 cut(s) 285, 328, 522, 549, 819, 868
GsaI CCCAGC 1 cut(s) 1239
HaeII RGCGCY 4 cut(s) 287, 551, 821, 870
HaeIII GGCC 4 cut(s) 152, 457, 938, 1088
HgaI GACGC 2 cut(s) 349, 669
HhaI GCGC 6 cut(s) 286, 329, 523, 550, 820, 869
Hin1I GRCGYC 4 cut(s) 284, 414, 548, 818
Hin1II CATG 3 cut(s) 181, 536, 1072
Hin6I GCGC 6 cut(s) 284, 327, 521, 548, 818, 867
HinP1I GCGC 6 cut(s) 284, 327, 521, 548, 818, 867
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HinfI GANTC 5 cut(s) 53, 211, 494, 536, 560
HpaI GTTAAC 1 cut(s) 337
HphI GGTGA 2 cut(s) 715, 1189
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 5 cut(s) 72, 726, 763, 838, 1358
Hpy188III TCNNGA 6 cut(s) 41, 385, 533, 658, 1155, 1285
Hpy8I GTNNAC 1 cut(s) 337
HpyCH4III ACNGT 3 cut(s) 84, 147, 988
HpyCH4IV ACGT 1 cut(s) 414
HpyCH4V TGCA 1 cut(s) 751
HpyF10VI GCNNNNNNNGC 6 cut(s) 264, 283, 428, 520, 623, 1237
HpyF3I CTNAG 3 cut(s) 627, 639, 924
HpySE526I ACGT 1 cut(s) 414
Hsp92I GRCGYC 4 cut(s) 284, 414, 548, 818
Hsp92II CATG 3 cut(s) 181, 536, 1072
HspAI GCGC 6 cut(s) 284, 327, 521, 548, 818, 867
KasI GGCGCC 3 cut(s) 283, 547, 817
KroI GCCGGC 2 cut(s) 544, 820
KroNI GCCGGC 2 cut(s) 546, 822
Ksp22I TGATCA 1 cut(s) 954
KspAI GTTAAC 1 cut(s) 337
Kzo9I GATC 9 cut(s) 196, 318, 330, 387, 423, 447, 529, 954, 1077
LmnI GCTCC 4 cut(s) 553, 859, 895, 1033
Lsp1109I GCAGC 4 cut(s) 856, 907, 961, 1133
MaeI CTAG 1 cut(s) 398
MaeII ACGT 1 cut(s) 414
MaeIII GTNAC 2 cut(s) 731, 982
MalI GATC 9 cut(s) 198, 320, 332, 389, 425, 449, 531, 956, 1079
MboI GATC 9 cut(s) 196, 318, 330, 387, 423, 447, 529, 954, 1077
MflI RGATCY 3 cut(s) 196, 318, 447
MhlI GDGCHC 2 cut(s) 11, 369
MluCI AATT 9 cut(s) 245, 342, 652, 698, 710, 1180, 1199, 1224, 1269
Mly113I GGCGCC 3 cut(s) 284, 548, 818
MlyI GAGTC 3 cut(s) 62, 545, 569
MmeI TCCRAC 2 cut(s) 129, 771
MreI CGCCGGCG 2 cut(s) 544, 820
MroNI GCCGGC 2 cut(s) 544, 820
MseI TTAA 4 cut(s) 315, 336, 1320, 1346
MspA1I CMGCKG 3 cut(s) 375, 460, 952
MvaI CCWGG 3 cut(s) 803, 1218, 1275
MvnI CGCG 2 cut(s) 329, 521
MwoI GCNNNNNNNGC 6 cut(s) 264, 283, 428, 520, 623, 1237
NaeI GCCGGC 2 cut(s) 546, 822
NarI GGCGCC 3 cut(s) 284, 548, 818
NciI CCSGG 7 cut(s) 59, 89, 110, 206, 324, 940, 1038
NdeII GATC 9 cut(s) 196, 318, 330, 387, 423, 447, 529, 954, 1077
NgoMIV GCCGGC 2 cut(s) 544, 820
NlaIII CATG 3 cut(s) 181, 536, 1072
NlaIV GGNNCC 8 cut(s) 63, 153, 285, 549, 555, 819, 891, 1035
NmeAIII GCCGAG 1 cut(s) 325
NmuCI GTSAC 1 cut(s) 982
NspV TTCGAA 1 cut(s) 1043
PagI TCATGA 1 cut(s) 532
PcsI WCGNNNNNNNCGW 3 cut(s) 375, 680, 767
PdiI GCCGGC 2 cut(s) 546, 822
PfeI GAWTC 2 cut(s) 211, 494
PflFI GACNNNGTC 2 cut(s) 188, 413
PfoI TCCNGGA 2 cut(s) 204, 1273
Ple19I CGATCG 2 cut(s) 333, 390
PleI GAGTC 3 cut(s) 61, 544, 568
PluTI GGCGCC 3 cut(s) 287, 551, 821
PpsI GAGTC 3 cut(s) 61, 544, 568
PpuMI RGGWCCY 1 cut(s) 184
Psp124BI GAGCTC 1 cut(s) 369
Psp5II RGGWCCY 1 cut(s) 184
Psp6I CCWGG 3 cut(s) 801, 1216, 1273
PspFI CCCAGC 1 cut(s) 1235
PspGI CCWGG 3 cut(s) 801, 1216, 1273
PspN4I GGNNCC 8 cut(s) 63, 153, 285, 549, 555, 819, 891, 1035
PspPI GGNCC 5 cut(s) 61, 151, 184, 879, 1086
PspPPI RGGWCCY 1 cut(s) 184
PsuI RGATCY 3 cut(s) 196, 318, 447
PsyI GACNNNGTC 2 cut(s) 188, 413
PvuI CGATCG 2 cut(s) 333, 390
PvuII CAGCTG 1 cut(s) 952
RsaI GTAC 3 cut(s) 33, 86, 518
RsaNI GTAC 3 cut(s) 32, 85, 517
SacI GAGCTC 1 cut(s) 369
SaqAI TTAA 4 cut(s) 315, 336, 1320, 1346
Sau3AI GATC 9 cut(s) 196, 318, 330, 387, 423, 447, 529, 954, 1077
Sau96I GGNCC 5 cut(s) 61, 151, 184, 879, 1086
SchI GAGTC 3 cut(s) 62, 545, 569
SduI GDGCHC 2 cut(s) 11, 369
SfcI CTRYAG 1 cut(s) 355
SfoI GGCGCC 3 cut(s) 285, 549, 819
SfuI TTCGAA 1 cut(s) 1043
SgrAI CRCCGGYG 2 cut(s) 544, 820
SinI GGWCC 3 cut(s) 61, 184, 879
Sse9I AATT 9 cut(s) 245, 342, 652, 698, 710, 1180, 1199, 1224, 1269
SspDI GGCGCC 3 cut(s) 283, 547, 817
SspMI CTAG 1 cut(s) 398
SstI GAGCTC 1 cut(s) 369
StyI CCWWGG 1 cut(s) 403
TaaI ACNGT 3 cut(s) 84, 147, 988
TaiI ACGT 1 cut(s) 417
TaqI TCGA 8 cut(s) 128, 174, 192, 363, 386, 489, 683, 1043
TasI AATT 9 cut(s) 245, 342, 652, 698, 710, 1180, 1199, 1224, 1269
TauI GCSGC 6 cut(s) 289, 299, 378, 397, 460, 938
TfiI GAWTC 2 cut(s) 211, 494
Tru1I TTAA 4 cut(s) 315, 336, 1320, 1346
Tru9I TTAA 4 cut(s) 315, 336, 1320, 1346
TscAI CASTG 1 cut(s) 458
TseFI GTSAC 1 cut(s) 982
TseI GCWGC 4 cut(s) 869, 920, 949, 1121
Tsp45I GTSAC 1 cut(s) 982
TspDTI ATGAA 3 cut(s) 194, 869, 1034
TspGWI ACGGA 2 cut(s) 584, 681
TspRI CASTG 1 cut(s) 458
Tth111I GACNNNGTC 2 cut(s) 188, 413
VpaK11BI GGWCC 3 cut(s) 61, 184, 879
XagI CCTNNNNNAGG 1 cut(s) 191
XapI RAATTY 3 cut(s) 1180, 1199, 1224
XspI CTAG 1 cut(s) 398
ZraI GACGTC 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.