Rh6BG015900

Senescence-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0002216
Physical Location & Seq
Reverse (-)
2267261 .. 2270786
3526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG015900.1

Sequence Viewer

Length: 1131 bp
ATGTCTTCAAATCCCAACTCTCTCTACCCACAAGTCATCCAAACCAACCCAGAAGCCACCTCTCCTTTCACCACAAAACCCACTTCTTCTTCCTCCTCCTCCATGTACCCTTCAGCCGACGTGACCCACCTCGCCGAGGACCTCTTCCCGGAAACCGACGCCGCTTCGGAAAATACCCAATCCTCTGAAGAGATCCTGGTCAAGATTCCGGGCGCGATCGTCCACCTGATCCAGAAGGACTACAGCATCGAACTGGCATGCGGCGAACTCACCATCGTCGGTCTCCGGCAAGGCGGCAACGTAGTCGCGGTGCTCGCGCGCGTCGGCGACGAGATCCAGTGGCCTTTGGCCAAGGACGAAGCGGCAGTCAAGCTCGACCACTCCCACTACTTCTTCAACCTACGCGTTCCGGCGAGTGGGGACAATGGTGAGATGGAGCTGCTCAACTATGGGTTGACGATTGCGACCAAGGGGCAGGACAGATTGATGAAGGAGTTGGACCGGGTTCTGGAGACGTATAGTTGCTTTTCCGAGCAGAAGATGGAGGGTTTGGAGCACTGGGATGTTTTGGAGGGGTGTGCGGCGAGGGAGACTTCGCCGGAGGATTTAGATTCTGAAGACAAGAAGAAACTGATCGGTGACAGTTCCGCGGCGTACTGGACTACGCTGGCTCCGAATGTAGAGGATTACAGCGGGCGCTGTGCGAGGATGATTGCTTCGGGTTCGGGTCAGCTGATTAGGGGGATCTTGTGGTGTGGGGATGTGACTGTGGACAGGCTTAAGTGGGGAAATGAGTTCTTGAAGAAGAGGATGGGACCGTGTTCGAGTTCCGAGATTAGTCCAGAAAGCTTGAAGAGGGTGCAAAGGGTGAAGAGGTTGACGAAGATGACTGAGGATTTGGCCTCTGGAATCCTTTCTGGGGTTATTAAAGTATCTGGATTCTTTACGAGTGCAATTGTTAACTCGAGAGTGGGCAAGAAATTTTTTAGCCTTCTTCCTGGAGAAATTATCCTGGCTTCCTTGGACGGATTCAGTAAGTCTTTTTATCTAAACAACTTATATTACAAATATTCGGATACACTTTTTTGTGCTTTGTTGACATGCTTTACATATTATAAGATGGATTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Senescence

Protein Analysis

376

Amino Acids

41.59

Weight (kDa)

5.11

Isoelectric Point (pI)

43.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence PF06911 237 - 346 1.6e-22 Senescence domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1116
AccII CGCG 7 cut(s) 215, 308, 317, 319, 321, 405, 650
AciI CCGC 9 cut(s) 162, 261, 294, 308, 362, 581, 648, 650, 693
AclWI GGATC 4 cut(s) 187, 223, 328, 752
AcoI YGGCCR 1 cut(s) 348
AcsI RAATTY 1 cut(s) 980
AcuI CTGAAG 3 cut(s) 96, 207, 636
AcyI GRCGYC 1 cut(s) 159
AfaI GTAC 2 cut(s) 107, 656
AfiI CCNNNNNNNGG 5 cut(s) 136, 148, 416, 508, 919
AflII CTTAAG 1 cut(s) 779
AflIII ACRYGT 1 cut(s) 403
AgsI TTSAA 4 cut(s) 9, 397, 802, 853
AjiI CACGTC 1 cut(s) 121
AjnI CCWGG 3 cut(s) 195, 997, 1011
AluBI AGCT 4 cut(s) 373, 439, 733, 849
AluI AGCT 4 cut(s) 373, 439, 733, 849
Alw21I GWGCWC 2 cut(s) 315, 558
Alw26I GTCTC 3 cut(s) 287, 506, 584
AlwI GGATC 4 cut(s) 187, 223, 328, 752
Ama87I CYCGRG 1 cut(s) 964
AoxI GGCC 3 cut(s) 341, 348, 900
ApeKI GCWGC 1 cut(s) 439
ApoI RAATTY 1 cut(s) 980
ArsI GACNNNNNNTTYG 4 cut(s) 351, 383, 880, 912
Asp700I GAANNNNTTC 1 cut(s) 913
AspLEI GCGC 4 cut(s) 215, 319, 321, 699
AspS9I GGNCC 3 cut(s) 139, 499, 815
AsuC2I CCSGG 3 cut(s) 149, 210, 503
AsuHPI GGTGA 5 cut(s) 61, 262, 440, 650, 880
AvaI CYCGRG 1 cut(s) 964
AvaII GGWCC 3 cut(s) 139, 499, 815
BalI TGGCCA 1 cut(s) 350
BbsI GAAGAC 1 cut(s) 624
Bbv12I GWGCWC 2 cut(s) 315, 558
BbvI GCAGC 1 cut(s) 426
BccI CCATC 5 cut(s) 281, 427, 535, 805, 1114
BcgI CGANNNNNNTGC 2 cut(s) 286, 320
BciT130I CCWGG 3 cut(s) 197, 999, 1013
BciVI GTATCC 1 cut(s) 1069
BcnI CCSGG 3 cut(s) 149, 210, 503
BcoDI GTCTC 3 cut(s) 287, 506, 584
BfaI CTAG 1 cut(s) 1129
BfmI CTRYAG 1 cut(s) 241
BfoI RGCGCY 1 cut(s) 700
BfrI CTTAAG 1 cut(s) 779
BfuI GTATCC 1 cut(s) 1069
BisI GCNGC 7 cut(s) 162, 262, 295, 363, 440, 582, 651
BlsI GCNGC 7 cut(s) 163, 263, 296, 364, 441, 583, 652
Bme1390I CCNGG 6 cut(s) 149, 197, 210, 503, 999, 1013
Bme18I GGWCC 3 cut(s) 139, 499, 815
BmeT110I CYCGRG 1 cut(s) 964
BmgBI CACGTC 1 cut(s) 121
BmgT120I GGNCC 3 cut(s) 139, 499, 815
BmiI GGNNCC 2 cut(s) 672, 816
BmrFI CCNGG 6 cut(s) 149, 197, 210, 503, 999, 1013
BmrI ACTGGG 1 cut(s) 568
BmsI GCATC 1 cut(s) 255
BmuI ACTGGG 1 cut(s) 568
BpiI GAAGAC 1 cut(s) 624
BpmI CTGGAG 2 cut(s) 530, 1020
BpuMI CCSGG 3 cut(s) 149, 210, 503
BsaHI GRCGYC 1 cut(s) 159
BsaI GGTCTC 1 cut(s) 287
BsaJI CCNNGG 5 cut(s) 135, 351, 468, 648, 1020
BsaXI ACNNNNNCTCC 2 cut(s) 655, 685
Bsc4I CCNNNNNNNGG 5 cut(s) 136, 148, 416, 508, 919
Bse1I ACTGG 4 cut(s) 258, 337, 563, 662
BseBI CCWGG 3 cut(s) 197, 999, 1013
BseDI CCNNGG 5 cut(s) 135, 351, 468, 648, 1020
BseGI GGATG 5 cut(s) 36, 568, 714, 766, 816
BseLI CCNNNNNNNGG 5 cut(s) 136, 148, 416, 508, 919
BseMII CTCAG 1 cut(s) 882
BseNI ACTGG 4 cut(s) 258, 337, 563, 662
BsePI GCGCGC 1 cut(s) 317
BseRI GAGGAG 2 cut(s) 85, 88
BseXI GCAGC 1 cut(s) 426
Bsh1236I CGCG 7 cut(s) 215, 308, 317, 319, 321, 405, 650
Bsh1285I CGRYCG 1 cut(s) 219
BshFI GGCC 3 cut(s) 343, 350, 902
BsiEI CGRYCG 1 cut(s) 219
BsiHKAI GWGCWC 2 cut(s) 315, 558
BsiHKCI CYCGRG 1 cut(s) 964
BsiSI CCGG 6 cut(s) 149, 209, 286, 410, 502, 599
BslFI GGGAC 2 cut(s) 434, 828
BslI CCNNNNNNNGG 5 cut(s) 136, 148, 416, 508, 919
BsmAI GTCTC 3 cut(s) 287, 506, 584
BsmBI CGTCTC 1 cut(s) 506
BsmFI GGGAC 2 cut(s) 434, 828
BsnI GGCC 3 cut(s) 343, 350, 902
Bso31I GGTCTC 1 cut(s) 287
BsoBI CYCGRG 1 cut(s) 964
Bsp1286I GDGCHC 2 cut(s) 315, 558
Bsp143I GATC 6 cut(s) 192, 216, 228, 333, 633, 744
BspACI CCGC 9 cut(s) 162, 261, 294, 308, 362, 581, 648, 650, 693
BspANI GGCC 3 cut(s) 343, 350, 902
BspCNI CTCAG 1 cut(s) 883
BspFNI CGCG 7 cut(s) 215, 308, 317, 319, 321, 405, 650
BspLI GGNNCC 2 cut(s) 672, 816
BspPI GGATC 4 cut(s) 187, 223, 328, 752
BspTI CTTAAG 1 cut(s) 779
BspTNI GGTCTC 1 cut(s) 287
BsrI ACTGG 4 cut(s) 258, 337, 563, 662
BssECI CCNNGG 5 cut(s) 135, 351, 468, 648, 1020
BssHII GCGCGC 1 cut(s) 317
BssMI GATC 6 cut(s) 192, 216, 228, 333, 633, 744
BssNI GRCGYC 1 cut(s) 159
BssT1I CCWWGG 3 cut(s) 351, 468, 1020
Bst2UI CCWGG 3 cut(s) 197, 999, 1013
Bst4CI ACNGT 3 cut(s) 644, 769, 819
Bst6I CTCTTC 5 cut(s) 149, 183, 800, 848, 866
BstACI GRCGYC 1 cut(s) 159
BstAFI CTTAAG 1 cut(s) 779
BstC8I GCNNGC 5 cut(s) 259, 315, 319, 669, 695
BstDEI CTNAG 1 cut(s) 891
BstDSI CCRYGG 1 cut(s) 648
BstENI CCTNNNNNAGG 1 cut(s) 134
BstF5I GGATG 5 cut(s) 36, 568, 714, 766, 816
BstFNI CGCG 7 cut(s) 215, 308, 317, 319, 321, 405, 650
BstH2I RGCGCY 1 cut(s) 700
BstHHI GCGC 4 cut(s) 215, 319, 321, 699
BstKTI GATC 6 cut(s) 195, 219, 231, 336, 636, 747
BstMAI GTCTC 3 cut(s) 287, 506, 584
BstMBI GATC 6 cut(s) 192, 216, 228, 333, 633, 744
BstMCI CGRYCG 1 cut(s) 219
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstNI CCWGG 3 cut(s) 197, 999, 1013
BstNSI RCATGY 2 cut(s) 261, 1104
BstSCI CCNGG 6 cut(s) 147, 195, 208, 501, 997, 1011
BstSFI CTRYAG 1 cut(s) 241
BstUI CGCG 7 cut(s) 215, 308, 317, 319, 321, 405, 650
BstV1I GCAGC 1 cut(s) 426
BstV2I GAAGAC 1 cut(s) 624
BstX2I RGATCY 3 cut(s) 192, 333, 744
BstYI RGATCY 3 cut(s) 192, 333, 744
BsuI GTATCC 1 cut(s) 1069
BsuRI GGCC 3 cut(s) 343, 350, 902
BtgI CCRYGG 1 cut(s) 648
BtrI CACGTC 1 cut(s) 121
BtsCI GGATG 5 cut(s) 36, 568, 714, 766, 816
BtsIMutI CAGTG 2 cut(s) 344, 556
Cac8I GCNNGC 5 cut(s) 259, 315, 319, 669, 695
CfoI GCGC 4 cut(s) 215, 319, 321, 699
Cfr13I GGNCC 3 cut(s) 139, 499, 815
Cfr42I CCGCGG 1 cut(s) 651
CseI GACGC 2 cut(s) 167, 310
Csp6I GTAC 2 cut(s) 106, 655
CviAII CATG 3 cut(s) 103, 258, 1101
CviQI GTAC 2 cut(s) 106, 655
DdeI CTNAG 1 cut(s) 891
DpnI GATC 6 cut(s) 194, 218, 230, 335, 635, 746
DpnII GATC 6 cut(s) 192, 216, 228, 333, 633, 744
EaeI YGGCCR 1 cut(s) 348
Eam1104I CTCTTC 5 cut(s) 149, 183, 800, 848, 866
EarI CTCTTC 5 cut(s) 149, 183, 800, 848, 866
Eco130I CCWWGG 3 cut(s) 351, 468, 1020
Eco31I GGTCTC 1 cut(s) 287
Eco47I GGWCC 3 cut(s) 139, 499, 815
Eco57I CTGAAG 3 cut(s) 96, 207, 636
Eco88I CYCGRG 1 cut(s) 964
EcoNI CCTNNNNNAGG 1 cut(s) 134
EcoO109I RGGNCCY 1 cut(s) 139
EcoRII CCWGG 3 cut(s) 195, 997, 1011
EcoT14I CCWWGG 3 cut(s) 351, 468, 1020
ErhI CCWWGG 3 cut(s) 351, 468, 1020
Esp3I CGTCTC 1 cut(s) 506
FaeI CATG 3 cut(s) 106, 261, 1104
FaiI YATR 8 cut(s) 104, 259, 450, 519, 1060, 1102, 1111, 1116
FaqI GGGAC 2 cut(s) 434, 828
FatI CATG 3 cut(s) 102, 257, 1100
FauI CCCGC 1 cut(s) 686
Fnu4HI GCNGC 7 cut(s) 162, 262, 295, 363, 440, 582, 651
FokI GGATG 5 cut(s) 23, 575, 721, 773, 823
Fsp4HI GCNGC 7 cut(s) 162, 262, 295, 363, 440, 582, 651
FspBI CTAG 1 cut(s) 1129
GlaI GCGC 4 cut(s) 214, 318, 320, 698
GluI GCNGC 7 cut(s) 162, 262, 295, 363, 440, 582, 651
GsuI CTGGAG 2 cut(s) 530, 1020
HaeII RGCGCY 1 cut(s) 700
HaeIII GGCC 3 cut(s) 343, 350, 902
HapII CCGG 6 cut(s) 149, 209, 286, 410, 502, 599
HgaI GACGC 2 cut(s) 167, 310
HhaI GCGC 4 cut(s) 215, 319, 321, 699
Hin1I GRCGYC 1 cut(s) 159
Hin1II CATG 3 cut(s) 106, 261, 1104
Hin6I GCGC 4 cut(s) 213, 317, 319, 697
HinP1I GCGC 4 cut(s) 213, 317, 319, 697
HincII GTYRAC 4 cut(s) 456, 879, 961, 1098
HindII GTYRAC 4 cut(s) 456, 879, 961, 1098
HindIII AAGCTT 1 cut(s) 847
HinfI GANTC 5 cut(s) 205, 611, 909, 939, 1029
HpaI GTTAAC 1 cut(s) 961
HpaII CCGG 6 cut(s) 149, 209, 286, 410, 502, 599
HphI GGTGA 5 cut(s) 61, 262, 440, 650, 880
Hpy166II GTNNAC 6 cut(s) 223, 456, 772, 879, 961, 1098
Hpy188I TCNGA 7 cut(s) 169, 187, 532, 616, 675, 832, 1075
Hpy188III TCNNGA 8 cut(s) 202, 232, 509, 799, 842, 906, 936, 966
Hpy8I GTNNAC 6 cut(s) 223, 456, 772, 879, 961, 1098
Hpy99I CGWCG 5 cut(s) 122, 161, 281, 326, 332
HpyAV CCTTC 4 cut(s) 120, 229, 484, 1001
HpyCH4III ACNGT 3 cut(s) 644, 769, 819
HpyCH4IV ACGT 3 cut(s) 120, 300, 515
HpyCH4V TGCA 2 cut(s) 862, 953
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
HpyF3I CTNAG 1 cut(s) 891
HpySE526I ACGT 3 cut(s) 120, 300, 515
Hsp92I GRCGYC 1 cut(s) 159
Hsp92II CATG 3 cut(s) 106, 261, 1104
HspAI GCGC 4 cut(s) 213, 317, 319, 697
KspAI GTTAAC 1 cut(s) 961
KspI CCGCGG 1 cut(s) 651
Kzo9I GATC 6 cut(s) 192, 216, 228, 333, 633, 744
LmnI GCTCC 3 cut(s) 436, 553, 676
Lsp1109I GCAGC 1 cut(s) 426
LweI GCATC 1 cut(s) 255
MaeI CTAG 1 cut(s) 1129
MaeII ACGT 3 cut(s) 120, 300, 515
MaeIII GTNAC 3 cut(s) 121, 638, 763
MalI GATC 6 cut(s) 194, 218, 230, 335, 635, 746
MauBI CGCGCGCG 1 cut(s) 317
MboI GATC 6 cut(s) 192, 216, 228, 333, 633, 744
MfeI CAATTG 1 cut(s) 954
MflI RGATCY 3 cut(s) 192, 333, 744
MhlI GDGCHC 2 cut(s) 315, 558
MlsI TGGCCA 1 cut(s) 350
MluCI AATT 3 cut(s) 954, 980, 1005
MluI ACGCGT 1 cut(s) 403
MluNI TGGCCA 1 cut(s) 350
MmeI TCCRAC 1 cut(s) 477
Mox20I TGGCCA 1 cut(s) 350
MroXI GAANNNNTTC 1 cut(s) 913
MscI TGGCCA 1 cut(s) 350
MseI TTAA 3 cut(s) 780, 927, 960
MslI CAYNNNNRTG 1 cut(s) 561
Msp20I TGGCCA 1 cut(s) 350
MspA1I CMGCKG 3 cut(s) 650, 693, 733
MspCI CTTAAG 1 cut(s) 779
MspI CCGG 6 cut(s) 149, 209, 286, 410, 502, 599
MspR9I CCNGG 6 cut(s) 149, 197, 210, 503, 999, 1013
MunI CAATTG 1 cut(s) 954
MvaI CCWGG 3 cut(s) 197, 999, 1013
MvnI CGCG 7 cut(s) 215, 308, 317, 319, 321, 405, 650
MwoI GCNNNNNNNGC 1 cut(s) 314
NciI CCSGG 3 cut(s) 149, 210, 503
NdeII GATC 6 cut(s) 192, 216, 228, 333, 633, 744
NlaIII CATG 3 cut(s) 106, 261, 1104
NlaIV GGNNCC 2 cut(s) 672, 816
NmeAIII GCCGAG 1 cut(s) 160
NmuCI GTSAC 3 cut(s) 121, 638, 763
NspI RCATGY 2 cut(s) 261, 1104
PaeI GCATGC 1 cut(s) 261
PaeR7I CTCGAG 1 cut(s) 964
PauI GCGCGC 1 cut(s) 317
PcsI WCGNNNNNNNCGW 1 cut(s) 671
PdmI GAANNNNTTC 1 cut(s) 913
PfeI GAWTC 5 cut(s) 205, 611, 909, 939, 1029
PfoI TCCNGGA 2 cut(s) 147, 997
PkrI GCNGC 7 cut(s) 163, 263, 296, 364, 441, 583, 652
Ple19I CGATCG 1 cut(s) 219
PpuMI RGGWCCY 1 cut(s) 139
PsiI TTATAA 1 cut(s) 1116
Psp5II RGGWCCY 1 cut(s) 139
Psp6I CCWGG 3 cut(s) 195, 997, 1011
PspGI CCWGG 3 cut(s) 195, 997, 1011
PspN4I GGNNCC 2 cut(s) 672, 816
PspPI GGNCC 3 cut(s) 139, 499, 815
PspPPI RGGWCCY 1 cut(s) 139
PsuI RGATCY 3 cut(s) 192, 333, 744
PteI GCGCGC 1 cut(s) 317
PvuI CGATCG 1 cut(s) 219
PvuII CAGCTG 1 cut(s) 733
RsaI GTAC 2 cut(s) 107, 656
RsaNI GTAC 2 cut(s) 106, 655
RseI CAYNNNNRTG 1 cut(s) 561
SacII CCGCGG 1 cut(s) 651
SaqAI TTAA 3 cut(s) 780, 927, 960
SatI GCNGC 7 cut(s) 162, 262, 295, 363, 440, 582, 651
Sau3AI GATC 6 cut(s) 192, 216, 228, 333, 633, 744
Sau96I GGNCC 3 cut(s) 139, 499, 815
ScrFI CCNGG 6 cut(s) 149, 197, 210, 503, 999, 1013
SduI GDGCHC 2 cut(s) 315, 558
SfaNI GCATC 1 cut(s) 255
SfcI CTRYAG 1 cut(s) 241
Sfr274I CTCGAG 1 cut(s) 964
Sfr303I CCGCGG 1 cut(s) 651
SgrBI CCGCGG 1 cut(s) 651
SinI GGWCC 3 cut(s) 139, 499, 815
SlaI CTCGAG 1 cut(s) 964
SmiMI CAYNNNNRTG 1 cut(s) 561
SmlI CTYRAG 2 cut(s) 779, 964
SmoI CTYRAG 2 cut(s) 779, 964
SphI GCATGC 1 cut(s) 261
Sse9I AATT 3 cut(s) 954, 980, 1005
SsiI CCGC 9 cut(s) 162, 261, 294, 308, 362, 581, 648, 650, 693
SspI AATATT 1 cut(s) 1070
SspMI CTAG 1 cut(s) 1129
StyD4I CCNGG 6 cut(s) 147, 195, 208, 501, 997, 1011
StyI CCWWGG 3 cut(s) 351, 468, 1020
TaaI ACNGT 3 cut(s) 644, 769, 819
TaiI ACGT 3 cut(s) 123, 303, 518
TaqI TCGA 4 cut(s) 249, 375, 824, 965
TaqII GACCGA 1 cut(s) 269
TasI AATT 3 cut(s) 954, 980, 1005
TauI GCSGC 6 cut(s) 164, 264, 297, 365, 584, 653
TfiI GAWTC 5 cut(s) 205, 611, 909, 939, 1029
Tru1I TTAA 3 cut(s) 780, 927, 960
Tru9I TTAA 3 cut(s) 780, 927, 960
TscAI CASTG 2 cut(s) 344, 563
TseFI GTSAC 3 cut(s) 121, 638, 763
TseI GCWGC 1 cut(s) 439
Tsp45I GTSAC 3 cut(s) 121, 638, 763
TspDTI ATGAA 1 cut(s) 503
TspGWI ACGGA 1 cut(s) 1041
TspRI CASTG 2 cut(s) 344, 563
Vha464I CTTAAG 1 cut(s) 779
VpaK11BI GGWCC 3 cut(s) 139, 499, 815
XagI CCTNNNNNAGG 1 cut(s) 134
XapI RAATTY 1 cut(s) 980
XceI RCATGY 2 cut(s) 261, 1104
XhoI CTCGAG 1 cut(s) 964
XmnI GAANNNNTTC 1 cut(s) 913
XspI CTAG 1 cut(s) 1129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.