Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7982236.1

Orthogroup ID

OG0002216

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 506

Gene Structure 505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7982236.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 505 bp

ctggtcaagattccgggcgcgatcgtccacctgatccagaaggactacagcatcgaactggcatgcggcgaactcaccatcgtcggtctccggcaaggcggcaacgtagtcgcggtgctcgcgcgcgtcggcgacgagatccagtggcctttggccaaggacgaagccgctgtcaagctcgaccactcccactacttcttcaacctccgcgttccggcgagtggggacaatggtgagatggagctgctcaactatgggttgacgattgcgaccaaggggcaggacagtttgatgaaggagttggaccgggttctggagacgtatagttgcttttccgagcagaagatggagggtttggagcactgggatgttttggaggggtgtgcggcgagggagacttcgccggaggatttagattctgaagatacgaagaaactgatgggtgacagctccgcggcgtactggactacgctggctccgaatgtagaggattacagcgggcgct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Senescence

Protein Analysis

168

Amino Acids

18.53

Weight (kDa)

4.56

Isoelectric Point (pI)

35.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17840 AT2G17840 AT3G51250 AT3G51250 AT4G35985 AT4G35985 AT4G35985
fragaria_vesca	FvH4_1g11540 FvH4_1g11540 FvH4_1g11540 FvH4_1g11540 FvH4_2g01340 FvH4_2g01340 FvH4_2g01340
malus_domestica	MD02G1128400.v1.1 MD10G1123700.v1.1 MD15G1243600.v1.1
prunus_persica	Prupe.7G170600_v2.0.a1 Prupe.8G164100_v2.0.a1
pyrus_communis	pycom10g10590 pycom15g21450
rosa_chinensis	RchiOBHm_Chr2g0099181 RchiOBHm_Chr6g0252261
rosa_laevigata	RLG00000015400 RLG00000016853
rosa_multiflora	Rmu_co7982236.1_g000001 Rmu_sc0006252.1_g000017 Rmu_sc0006878.1_g000002
rosa_roxburghii	Rroxscaffold_2G00143380 Rroxscaffold_7G00216200
rosa_rugosa	Rorug02G0077500 Rorug05G0506500 Rorug05G0506600
rosa_samantha	Rh2AG126400 Rh2BG129600 Rh2CG130600 Rh2DG131000 Rh6AG020300 Rh6BG015900 Rh6CG013100 Rh6DG014400
rosa_wichuraiana	Rw2G009750 Rw6G001670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	7 cut(s)	20, 113, 122, 124, 126, 210, 455
AciI	CCGC	9 cut(s)	66, 99, 113, 168, 208, 386, 453, 455, 498
AclWI	GGATC	2 cut(s)	28, 133
AcoI	YGGCCR	1 cut(s)	153
AcuI	CTGAAG	1 cut(s)	441
AfaI	GTAC	1 cut(s)	461
AfiI	CCNNNNNNNGG	3 cut(s)	214, 221, 313
AgsI	TTSAA	1 cut(s)	202
AluBI	AGCT	3 cut(s)	178, 244, 450
AluI	AGCT	3 cut(s)	178, 244, 450
Alw21I	GWGCWC	2 cut(s)	120, 363
Alw26I	GTCTC	3 cut(s)	92, 311, 389
AlwI	GGATC	2 cut(s)	28, 133
AoxI	GGCC	2 cut(s)	146, 153
ApeKI	GCWGC	1 cut(s)	244
ArsI	GACNNNNNNTTYG	2 cut(s)	156, 188
AspLEI	GCGC	4 cut(s)	20, 124, 126, 504
AspS9I	GGNCC	1 cut(s)	304
AsuC2I	CCSGG	2 cut(s)	15, 308
AsuHPI	GGTGA	3 cut(s)	67, 245, 455
AvaII	GGWCC	1 cut(s)	304
BalI	TGGCCA	1 cut(s)	155
Bbv12I	GWGCWC	2 cut(s)	120, 363
BbvI	GCAGC	1 cut(s)	231
BccI	CCATC	4 cut(s)	86, 232, 340, 433
BcgI	CGANNNNNNTGC	2 cut(s)	91, 125
BcnI	CCSGG	2 cut(s)	15, 308
BcoDI	GTCTC	3 cut(s)	92, 311, 389
BfmI	CTRYAG	1 cut(s)	46
BfoI	RGCGCY	1 cut(s)	505
BisI	GCNGC	6 cut(s)	67, 100, 168, 245, 387, 456
BlsI	GCNGC	6 cut(s)	68, 101, 169, 246, 388, 457
Bme1390I	CCNGG	2 cut(s)	15, 308
Bme18I	GGWCC	1 cut(s)	304
BmgT120I	GGNCC	1 cut(s)	304
BmiI	GGNNCC	1 cut(s)	477
BmrFI	CCNGG	2 cut(s)	15, 308
BmrI	ACTGGG	1 cut(s)	373
BmsI	GCATC	1 cut(s)	60
BmuI	ACTGGG	1 cut(s)	373
BpmI	CTGGAG	1 cut(s)	335
BpuMI	CCSGG	2 cut(s)	15, 308
BsaI	GGTCTC	1 cut(s)	92
BsaJI	CCNNGG	3 cut(s)	156, 273, 453
BsaXI	ACNNNNNCTCC	2 cut(s)	460, 490
Bsc4I	CCNNNNNNNGG	3 cut(s)	214, 221, 313
Bse1I	ACTGG	4 cut(s)	63, 142, 368, 467
BseDI	CCNNGG	3 cut(s)	156, 273, 453
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	3 cut(s)	214, 221, 313
BseNI	ACTGG	4 cut(s)	63, 142, 368, 467
BsePI	GCGCGC	1 cut(s)	122
BseXI	GCAGC	1 cut(s)	231
Bsh1236I	CGCG	7 cut(s)	20, 113, 122, 124, 126, 210, 455
Bsh1285I	CGRYCG	1 cut(s)	24
BshFI	GGCC	2 cut(s)	148, 155
BsiEI	CGRYCG	1 cut(s)	24
BsiHKAI	GWGCWC	2 cut(s)	120, 363
BsiSI	CCGG	5 cut(s)	14, 91, 215, 307, 404
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	3 cut(s)	214, 221, 313
BsmAI	GTCTC	3 cut(s)	92, 311, 389
BsmBI	CGTCTC	1 cut(s)	311
BsmFI	GGGAC	1 cut(s)	239
BsnI	GGCC	2 cut(s)	148, 155
Bso31I	GGTCTC	1 cut(s)	92
Bsp1286I	GDGCHC	2 cut(s)	120, 363
Bsp143I	GATC	3 cut(s)	21, 33, 138
BspACI	CCGC	9 cut(s)	66, 99, 113, 168, 208, 386, 453, 455, 498
BspANI	GGCC	2 cut(s)	148, 155
BspFNI	CGCG	7 cut(s)	20, 113, 122, 124, 126, 210, 455
BspLI	GGNNCC	1 cut(s)	477
BspPI	GGATC	2 cut(s)	28, 133
BspTNI	GGTCTC	1 cut(s)	92
BsrI	ACTGG	4 cut(s)	63, 142, 368, 467
BssECI	CCNNGG	3 cut(s)	156, 273, 453
BssHII	GCGCGC	1 cut(s)	122
BssMI	GATC	3 cut(s)	21, 33, 138
BssT1I	CCWWGG	2 cut(s)	156, 273
Bst4CI	ACNGT	1 cut(s)	287
BstC8I	GCNNGC	5 cut(s)	64, 120, 124, 474, 500
BstDSI	CCRYGG	1 cut(s)	453
BstF5I	GGATG	1 cut(s)	373
BstFNI	CGCG	7 cut(s)	20, 113, 122, 124, 126, 210, 455
BstH2I	RGCGCY	1 cut(s)	505
BstHHI	GCGC	4 cut(s)	20, 124, 126, 504
BstKTI	GATC	3 cut(s)	24, 36, 141
BstMAI	GTCTC	3 cut(s)	92, 311, 389
BstMBI	GATC	3 cut(s)	21, 33, 138
BstMCI	CGRYCG	1 cut(s)	24
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNSI	RCATGY	1 cut(s)	66
BstSCI	CCNGG	2 cut(s)	13, 306
BstSFI	CTRYAG	1 cut(s)	46
BstUI	CGCG	7 cut(s)	20, 113, 122, 124, 126, 210, 455
BstV1I	GCAGC	1 cut(s)	231
BstX2I	RGATCY	1 cut(s)	138
BstYI	RGATCY	1 cut(s)	138
BsuRI	GGCC	2 cut(s)	148, 155
BtgI	CCRYGG	1 cut(s)	453
BtsCI	GGATG	1 cut(s)	373
BtsIMutI	CAGTG	2 cut(s)	149, 361
Cac8I	GCNNGC	5 cut(s)	64, 120, 124, 474, 500
CfoI	GCGC	4 cut(s)	20, 124, 126, 504
Cfr13I	GGNCC	1 cut(s)	304
Cfr42I	CCGCGG	1 cut(s)	456
CseI	GACGC	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	460
CviAII	CATG	1 cut(s)	63
CviJI	RGCY	7 cut(s)	148, 155, 167, 178, 244, 450, 476
CviKI_1	RGCY	7 cut(s)	148, 155, 167, 178, 244, 450, 476
CviQI	GTAC	1 cut(s)	460
DpnI	GATC	3 cut(s)	23, 35, 140
DpnII	GATC	3 cut(s)	21, 33, 138
EaeI	YGGCCR	1 cut(s)	153
Eco130I	CCWWGG	2 cut(s)	156, 273
Eco31I	GGTCTC	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	304
Eco57I	CTGAAG	1 cut(s)	441
EcoT14I	CCWWGG	2 cut(s)	156, 273
ErhI	CCWWGG	2 cut(s)	156, 273
Esp3I	CGTCTC	1 cut(s)	311
FaeI	CATG	1 cut(s)	66
FaiI	YATR	3 cut(s)	64, 255, 324
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	1 cut(s)	62
FauI	CCCGC	1 cut(s)	491
Fnu4HI	GCNGC	6 cut(s)	67, 100, 168, 245, 387, 456
FokI	GGATG	1 cut(s)	380
Fsp4HI	GCNGC	6 cut(s)	67, 100, 168, 245, 387, 456
GlaI	GCGC	4 cut(s)	19, 123, 125, 503
GluI	GCNGC	6 cut(s)	67, 100, 168, 245, 387, 456
GsuI	CTGGAG	1 cut(s)	335
HaeII	RGCGCY	1 cut(s)	505
HaeIII	GGCC	2 cut(s)	148, 155
HapII	CCGG	5 cut(s)	14, 91, 215, 307, 404
HgaI	GACGC	1 cut(s)	115
HhaI	GCGC	4 cut(s)	20, 124, 126, 504
Hin1II	CATG	1 cut(s)	66
Hin6I	GCGC	4 cut(s)	18, 122, 124, 502
HinP1I	GCGC	4 cut(s)	18, 122, 124, 502
HincII	GTYRAC	1 cut(s)	261
HindII	GTYRAC	1 cut(s)	261
HinfI	GANTC	2 cut(s)	10, 416
HpaII	CCGG	5 cut(s)	14, 91, 215, 307, 404
HphI	GGTGA	3 cut(s)	67, 245, 455
Hpy166II	GTNNAC	2 cut(s)	28, 261
Hpy188I	TCNGA	3 cut(s)	337, 421, 480
Hpy188III	TCNNGA	3 cut(s)	7, 37, 314
Hpy8I	GTNNAC	2 cut(s)	28, 261
Hpy99I	CGWCG	3 cut(s)	86, 131, 137
HpyAV	CCTTC	2 cut(s)	34, 289
HpyCH4III	ACNGT	1 cut(s)	287
HpyCH4IV	ACGT	2 cut(s)	105, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpySE526I	ACGT	2 cut(s)	105, 320
Hsp92II	CATG	1 cut(s)	66
HspAI	GCGC	4 cut(s)	18, 122, 124, 502
KspI	CCGCGG	1 cut(s)	456
Kzo9I	GATC	3 cut(s)	21, 33, 138
LmnI	GCTCC	4 cut(s)	241, 358, 455, 481
Lsp1109I	GCAGC	1 cut(s)	231
LweI	GCATC	1 cut(s)	60
MaeII	ACGT	2 cut(s)	105, 320
MaeIII	GTNAC	1 cut(s)	443
MalI	GATC	3 cut(s)	23, 35, 140
MauBI	CGCGCGCG	1 cut(s)	122
MboI	GATC	3 cut(s)	21, 33, 138
MboII	GAAGA	4 cut(s)	190, 355, 434, 442
MflI	RGATCY	1 cut(s)	138
MhlI	GDGCHC	2 cut(s)	120, 363
MlsI	TGGCCA	1 cut(s)	155
MluNI	TGGCCA	1 cut(s)	155
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	6 cut(s)	215, 343, 370, 384, 400, 481
Mox20I	TGGCCA	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	155
MslI	CAYNNNNRTG	1 cut(s)	366
Msp20I	TGGCCA	1 cut(s)	155
MspA1I	CMGCKG	3 cut(s)	170, 455, 498
MspI	CCGG	5 cut(s)	14, 91, 215, 307, 404
MspR9I	CCNGG	2 cut(s)	15, 308
MvnI	CGCG	7 cut(s)	20, 113, 122, 124, 126, 210, 455
MwoI	GCNNNNNNNGC	1 cut(s)	119
NciI	CCSGG	2 cut(s)	15, 308
NdeII	GATC	3 cut(s)	21, 33, 138
NlaIII	CATG	1 cut(s)	66
NlaIV	GGNNCC	1 cut(s)	477
NmuCI	GTSAC	1 cut(s)	443
NspI	RCATGY	1 cut(s)	66
PaeI	GCATGC	1 cut(s)	66
PauI	GCGCGC	1 cut(s)	122
PcsI	WCGNNNNNNNCGW	1 cut(s)	476
PfeI	GAWTC	2 cut(s)	10, 416
PkrI	GCNGC	6 cut(s)	68, 101, 169, 246, 388, 457
Ple19I	CGATCG	1 cut(s)	24
PspN4I	GGNNCC	1 cut(s)	477
PspPI	GGNCC	1 cut(s)	304
PsuI	RGATCY	1 cut(s)	138
PteI	GCGCGC	1 cut(s)	122
PvuI	CGATCG	1 cut(s)	24
RsaI	GTAC	1 cut(s)	461
RsaNI	GTAC	1 cut(s)	460
RseI	CAYNNNNRTG	1 cut(s)	366
SacII	CCGCGG	1 cut(s)	456
SatI	GCNGC	6 cut(s)	67, 100, 168, 245, 387, 456
Sau3AI	GATC	3 cut(s)	21, 33, 138
Sau96I	GGNCC	1 cut(s)	304
ScrFI	CCNGG	2 cut(s)	15, 308
SduI	GDGCHC	2 cut(s)	120, 363
SetI	ASST	7 cut(s)	33, 108, 180, 207, 246, 323, 452
SfaNI	GCATC	1 cut(s)	60
SfcI	CTRYAG	1 cut(s)	46
Sfr303I	CCGCGG	1 cut(s)	456
SgrBI	CCGCGG	1 cut(s)	456
SinI	GGWCC	1 cut(s)	304
SmiMI	CAYNNNNRTG	1 cut(s)	366
SphI	GCATGC	1 cut(s)	66
SsiI	CCGC	9 cut(s)	66, 99, 113, 168, 208, 386, 453, 455, 498
StyD4I	CCNGG	2 cut(s)	13, 306
StyI	CCWWGG	2 cut(s)	156, 273
TaaI	ACNGT	1 cut(s)	287
TaiI	ACGT	2 cut(s)	108, 323
TaqI	TCGA	2 cut(s)	54, 180
TaqII	GACCGA	1 cut(s)	74
TauI	GCSGC	5 cut(s)	69, 102, 170, 389, 458
TfiI	GAWTC	2 cut(s)	10, 416
TscAI	CASTG	2 cut(s)	149, 368
TseFI	GTSAC	1 cut(s)	443
TseI	GCWGC	1 cut(s)	244
Tsp45I	GTSAC	1 cut(s)	443
TspDTI	ATGAA	1 cut(s)	308
TspRI	CASTG	2 cut(s)	149, 368
VpaK11BI	GGWCC	1 cut(s)	304
XceI	RCATGY	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.