AT3G51250

Senescence-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0002216
Physical Location & Seq
Forward (+)
19028106 .. 19030676
2571 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G51250.2

Sequence Viewer

Length: 1392 bp
ATGAATCCTTCTCACGGTGGCGACGACAAGCAACGACCGGCGATGTATCCCCAAGTTGATCAATCCATTCCTGATAATCCTTTTGCTTCTACAAATCCTTACGTCGCTTCTTCACCTTATCTATATCCTTCTCTATCCTCTCATAATCTCGGACCTAATCTCTTCCCAGACCACGGAGATGCATCCAACGACCAATCACCATCTGCTCCTCCTCAGGCGACGGAGGAGGTTCTCATCCGTGTTCCCGGCGCTATTCTCAACCTTATCGACAAATCCTACAGCGTTGAACTCGCGTGCGGTGATTTCACCATCGTTCGAATTATCCAGGGGCAAAACATTGTAGCGGTTCTAGCCAATGTTGGAAATGAGATTCAATGGCCGTTGACGAAGAACGAGGTTGCAGCTAAGGTTGATGGATCTCACTATTTCTTTTCGATTCATCCGCCAAAGGAGAAAGGTCAAGGATCTGGGTCTGATTCAGATGATGAACAAGGGCAAAAGAGTAAATCGAAATCGGATGATGAGATTCTTAATTACGGATTGACCATTGCTTCGAAAGGGCAAGAGAATGTATTACTTGTGCTTGATCAGGTTTTACGAGACTACAGTTGTTTCACAGAGCAGAGAATGTCTGAAAAAGCCAAGGAGACTGGAGAAGAGGTGCTGGGAAATTCAGTGGTGGCGGACACTTCGCCGGAGGAGCTTAAGGGTGAGAGAAAGGATGTTGTGGAAGGTCAATGTGCGGCGTATTGGACAACACTTGCACCGAATGTCGAGGATTATACTCACAGTACTGCTAAAATGATAGCTTCCGGGTCAGGTAAGCTGATCAGAGGGATACTGTGGTGTGGGGATGTAACTGTGGAGAGACTCAAGAAGGGAAACGAGGTTATGAAGAATAGGCTTAGTCGTGCTGAGAAGGAGAAAGATGTTAGCCCTGAGACACTGAGGAGAATCAAGAGGGTTAAGAGAGTGACACAAATGACAGAGAAAGTTGCCACTGGTGTTCTTTCTGGTGTTGTCAAAGTCTCGGGATTCATCACTGGTTCAATGGCAAACTCAAAAGCTGGAAAGAAGCTTTTTGGTCTCTTGCCTGGAGAGATTGTTCTCGCATCCCTCGATGGATTTAGCAAGATCTGTGATGCTGTTGAAGTTGCTGGGAAAAACGTAATGTCGACTTCATCAACTGTCACAACAGAATTAGTCAATCACAGGTACGGCACAAAAGCAGCAGAGGCTACTAACGAAGGGCTAGACGCAGCGGGACATGCATTTGGAACGGCATGGGTTGCTTTCAAGATTCGAAAGGCATTTAACCCCAAAAATGTCATAAAGCCTTCATCATTGGCCAAGTCTGTTTCGGAACTAAAGGCTAAGAAAGGCTCCAAGTAA

Protein Analysis

463

Amino Acids

49.9

Weight (kDa)

7.09

Isoelectric Point (pI)

34.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence PF06911 267 - 378 5.1e-26 Senescence domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1175
AccII CGCG 1 cut(s) 293
AciI CCGC 6 cut(s) 297, 344, 443, 683, 743, 1262
AclWI GGATC 2 cut(s) 424, 472
AcoI YGGCCR 2 cut(s) 377, 1347
AcsI RAATTY 1 cut(s) 670
AfaI GTAC 2 cut(s) 793, 1217
AfiI CCNNNNNNNGG 2 cut(s) 14, 173
AflII CTTAAG 1 cut(s) 704
AgsI TTSAA 5 cut(s) 287, 374, 1050, 1151, 1297
AjnI CCWGG 2 cut(s) 324, 1093
AloI GAACNNNNNNTCC 2 cut(s) 1089, 1121
AluBI AGCT 6 cut(s) 404, 703, 809, 826, 1067, 1078
AluI AGCT 6 cut(s) 404, 703, 809, 826, 1067, 1078
Alw26I GTCTC 6 cut(s) 594, 641, 862, 935, 1033, 1091
AlwI GGATC 2 cut(s) 424, 472
Ama87I CYCGRG 1 cut(s) 1030
AoxI GGCC 2 cut(s) 377, 1347
ApeKI GCWGC 3 cut(s) 401, 1229, 1259
ApoI RAATTY 1 cut(s) 670
ArsI GACNNNNNNTTYG 2 cut(s) 535, 567
AspLEI GCGC 1 cut(s) 251
AspS9I GGNCC 1 cut(s) 152
AsuC2I CCSGG 2 cut(s) 246, 814
AsuHPI GGTGA 5 cut(s) 105, 189, 298, 311, 722
AsuII TTCGAA 3 cut(s) 316, 554, 1303
AvaI CYCGRG 1 cut(s) 1030
AvaII GGWCC 1 cut(s) 152
AxyI CCTNAGG 1 cut(s) 213
BaeI ACNNNNGTAYC 2 cut(s) 830, 863
BalI TGGCCA 1 cut(s) 1349
BbvI GCAGC 3 cut(s) 413, 1241, 1271
BccI CCATC 4 cut(s) 208, 317, 407, 1115
BceAI ACGGC 3 cut(s) 364, 1234, 1296
BciT130I CCWGG 2 cut(s) 326, 1095
BciVI GTATCC 2 cut(s) 57, 831
BclI TGATCA 3 cut(s) 58, 586, 828
BcnI CCSGG 2 cut(s) 246, 814
BcoDI GTCTC 6 cut(s) 594, 641, 862, 935, 1033, 1091
BfaI CTAG 2 cut(s) 350, 1253
BfmI CTRYAG 2 cut(s) 277, 604
BfoI RGCGCY 1 cut(s) 252
BfrI CTTAAG 1 cut(s) 704
BfuI GTATCC 2 cut(s) 57, 831
BglII AGATCT 1 cut(s) 1134
BisI GCNGC 4 cut(s) 402, 744, 1230, 1260
BlsI GCNGC 4 cut(s) 403, 745, 1231, 1261
BmcAI AGTACT 1 cut(s) 793
Bme1390I CCNGG 4 cut(s) 246, 326, 814, 1095
Bme18I GGWCC 1 cut(s) 152
BmeT110I CYCGRG 1 cut(s) 1030
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 1384
BmrFI CCNGG 4 cut(s) 246, 326, 814, 1095
BmsI GCATC 4 cut(s) 169, 191, 1121, 1132
BpmI CTGGAG 2 cut(s) 672, 1116
Bpu10I CCTNAGC 1 cut(s) 405
Bpu14I TTCGAA 3 cut(s) 316, 554, 1303
BpuEI CTTGAG 1 cut(s) 857
BpuMI CCSGG 2 cut(s) 246, 814
BsaI GGTCTC 1 cut(s) 1091
BsaJI CCNNGG 3 cut(s) 172, 325, 642
BsaXI ACNNNNNCTCC 4 cut(s) 645, 675, 1089, 1119
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 173
Bse118I RCCGGY 1 cut(s) 37
Bse1I ACTGG 3 cut(s) 655, 1006, 1048
Bse21I CCTNAGG 1 cut(s) 213
Bse3DI GCAATG 1 cut(s) 546
BseBI CCWGG 2 cut(s) 326, 1095
BseDI CCNNGG 3 cut(s) 172, 325, 642
BseGI GGATG 7 cut(s) 182, 234, 439, 523, 727, 859, 1112
BseLI CCNNNNNNNGG 2 cut(s) 14, 173
BseMI GCAATG 1 cut(s) 546
BseMII CTCAG 4 cut(s) 227, 906, 930, 938
BseNI ACTGG 3 cut(s) 655, 1006, 1048
BseRI GAGGAG 5 cut(s) 198, 201, 239, 713, 964
BseXI GCAGC 3 cut(s) 413, 1241, 1271
BseYI CCCAGC 2 cut(s) 664, 1157
Bsh1236I CGCG 1 cut(s) 293
Bsh1285I CGRYCG 1 cut(s) 38
BshFI GGCC 2 cut(s) 379, 1349
BsiEI CGRYCG 1 cut(s) 38
BsiHKCI CYCGRG 1 cut(s) 1030
BsiSI CCGG 4 cut(s) 38, 246, 695, 813
BslFI GGGAC 1 cut(s) 1278
BslI CCNNNNNNNGG 2 cut(s) 14, 173
BsmAI GTCTC 6 cut(s) 594, 641, 862, 935, 1033, 1091
BsmFI GGGAC 1 cut(s) 1278
BsnI GGCC 2 cut(s) 379, 1349
Bso31I GGTCTC 1 cut(s) 1091
BsoBI CYCGRG 1 cut(s) 1030
Bsp119I TTCGAA 3 cut(s) 316, 554, 1303
Bsp143I GATC 6 cut(s) 58, 416, 464, 586, 828, 1134
BspACI CCGC 6 cut(s) 297, 344, 443, 683, 743, 1262
BspANI GGCC 2 cut(s) 379, 1349
BspCNI CTCAG 4 cut(s) 226, 907, 931, 939
BspFNI CGCG 1 cut(s) 293
BspLI GGNNCC 1 cut(s) 1384
BspPI GGATC 2 cut(s) 424, 472
BspT104I TTCGAA 3 cut(s) 316, 554, 1303
BspTI CTTAAG 1 cut(s) 704
BspTNI GGTCTC 1 cut(s) 1091
BsrDI GCAATG 1 cut(s) 546
BsrFI RCCGGY 1 cut(s) 37
BsrI ACTGG 3 cut(s) 655, 1006, 1048
BssAI RCCGGY 1 cut(s) 37
BssECI CCNNGG 3 cut(s) 172, 325, 642
BssMI GATC 6 cut(s) 58, 416, 464, 586, 828, 1134
BssT1I CCWWGG 1 cut(s) 642
Bst2UI CCWGG 2 cut(s) 326, 1095
Bst4CI ACNGT 6 cut(s) 17, 608, 791, 843, 862, 1189
Bst6I CTCTTC 2 cut(s) 167, 651
BstAFI CTTAAG 1 cut(s) 704
BstAPI GCANNNNNTGC 1 cut(s) 1289
BstBI TTCGAA 3 cut(s) 316, 554, 1303
BstC8I GCNNGC 1 cut(s) 295
BstDEI CTNAG 7 cut(s) 213, 405, 905, 915, 939, 947, 1374
BstDSI CCRYGG 1 cut(s) 172
BstF5I GGATG 7 cut(s) 182, 234, 439, 523, 727, 859, 1112
BstFNI CGCG 1 cut(s) 293
BstH2I RGCGCY 1 cut(s) 252
BstHHI GCGC 1 cut(s) 251
BstKTI GATC 6 cut(s) 61, 419, 467, 589, 831, 1137
BstMAI GTCTC 6 cut(s) 594, 641, 862, 935, 1033, 1091
BstMBI GATC 6 cut(s) 58, 416, 464, 586, 828, 1134
BstMCI CGRYCG 1 cut(s) 38
BstMWI GCNNNNNNNGC 5 cut(s) 350, 700, 1235, 1268, 1289
BstNI CCWGG 2 cut(s) 326, 1095
BstNSI RCATGY 1 cut(s) 1271
BstSCI CCNGG 4 cut(s) 244, 324, 812, 1093
BstSFI CTRYAG 2 cut(s) 277, 604
BstUI CGCG 1 cut(s) 293
BstV1I GCAGC 3 cut(s) 413, 1241, 1271
BstX2I RGATCY 3 cut(s) 416, 464, 1134
BstYI RGATCY 3 cut(s) 416, 464, 1134
Bsu36I CCTNAGG 1 cut(s) 213
BsuI GTATCC 2 cut(s) 57, 831
BsuRI GGCC 2 cut(s) 379, 1349
BtgI CCRYGG 1 cut(s) 172
BtgZI GCGATG 1 cut(s) 56
BtsCI GGATG 7 cut(s) 182, 234, 439, 523, 727, 859, 1112
BtsIMutI CAGTG 4 cut(s) 681, 944, 999, 1041
Cac8I GCNNGC 1 cut(s) 295
CfoI GCGC 1 cut(s) 251
Cfr10I RCCGGY 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 152
CseI GACGC 1 cut(s) 1265
Csp6I GTAC 2 cut(s) 792, 1216
CviAII CATG 2 cut(s) 1268, 1284
CviQI GTAC 2 cut(s) 792, 1216
DdeI CTNAG 7 cut(s) 213, 405, 905, 915, 939, 947, 1374
DpnI GATC 6 cut(s) 60, 418, 466, 588, 830, 1136
DpnII GATC 6 cut(s) 58, 416, 464, 586, 828, 1134
EaeI YGGCCR 2 cut(s) 377, 1347
Eam1104I CTCTTC 2 cut(s) 167, 651
EarI CTCTTC 2 cut(s) 167, 651
EciI GGCGGA 2 cut(s) 432, 698
Eco130I CCWWGG 1 cut(s) 642
Eco31I GGTCTC 1 cut(s) 1091
Eco47I GGWCC 1 cut(s) 152
Eco81I CCTNAGG 1 cut(s) 213
Eco88I CYCGRG 1 cut(s) 1030
EcoRII CCWGG 2 cut(s) 324, 1093
EcoT14I CCWWGG 1 cut(s) 642
EcoT22I ATGCAT 2 cut(s) 184, 1273
ErhI CCWWGG 1 cut(s) 642
FaeI CATG 2 cut(s) 1271, 1287
FaiI YATR 7 cut(s) 124, 144, 783, 893, 1269, 1285, 1331
FaqI GGGAC 1 cut(s) 1278
FatI CATG 2 cut(s) 1267, 1283
FauI CCCGC 1 cut(s) 1255
FbaI TGATCA 3 cut(s) 58, 586, 828
FblI GTMKAC 1 cut(s) 1175
Fnu4HI GCNGC 4 cut(s) 402, 744, 1230, 1260
FokI GGATG 7 cut(s) 169, 221, 426, 530, 734, 866, 1099
Fsp4HI GCNGC 4 cut(s) 402, 744, 1230, 1260
FspBI CTAG 2 cut(s) 350, 1253
GlaI GCGC 1 cut(s) 250
GluI GCNGC 4 cut(s) 402, 744, 1230, 1260
GsaI CCCAGC 2 cut(s) 668, 1161
GsuI CTGGAG 2 cut(s) 672, 1116
HaeII RGCGCY 1 cut(s) 252
HaeIII GGCC 2 cut(s) 379, 1349
HapII CCGG 4 cut(s) 38, 246, 695, 813
HgaI GACGC 1 cut(s) 1265
HhaI GCGC 1 cut(s) 251
Hin1II CATG 2 cut(s) 1271, 1287
Hin6I GCGC 1 cut(s) 249
HinP1I GCGC 1 cut(s) 249
HincII GTYRAC 2 cut(s) 384, 1176
HindII GTYRAC 2 cut(s) 384, 1176
HindIII AAGCTT 1 cut(s) 1076
HinfI GANTC 9 cut(s) 4, 370, 436, 476, 526, 870, 954, 1035, 1300
HpaII CCGG 4 cut(s) 38, 246, 695, 813
HphI GGTGA 5 cut(s) 105, 189, 298, 311, 722
Hpy166II GTNNAC 2 cut(s) 384, 1176
Hpy188I TCNGA 7 cut(s) 152, 475, 481, 517, 634, 833, 1363
Hpy188III TCNNGA 5 cut(s) 71, 874, 958, 1032, 1297
Hpy8I GTNNAC 2 cut(s) 384, 1176
Hpy99I CGWCG 3 cut(s) 26, 107, 223
HpyAV CCTTC 7 cut(s) 18, 138, 725, 871, 913, 1241, 1347
HpyCH4III ACNGT 6 cut(s) 17, 608, 791, 843, 862, 1189
HpyCH4IV ACGT 2 cut(s) 102, 1167
HpyCH4V TGCA 4 cut(s) 182, 401, 764, 1271
HpyF10VI GCNNNNNNNGC 5 cut(s) 350, 700, 1235, 1268, 1289
HpyF3I CTNAG 7 cut(s) 213, 405, 905, 915, 939, 947, 1374
HpySE526I ACGT 2 cut(s) 102, 1167
Hsp92II CATG 2 cut(s) 1271, 1287
HspAI GCGC 1 cut(s) 249
Ksp22I TGATCA 3 cut(s) 58, 586, 828
Kzo9I GATC 6 cut(s) 58, 416, 464, 586, 828, 1134
LmnI GCTCC 3 cut(s) 211, 700, 1388
Lsp1109I GCAGC 3 cut(s) 413, 1241, 1271
LweI GCATC 4 cut(s) 169, 191, 1121, 1132
MaeI CTAG 2 cut(s) 350, 1253
MaeII ACGT 2 cut(s) 102, 1167
MaeIII GTNAC 3 cut(s) 856, 973, 1189
MalI GATC 6 cut(s) 60, 418, 466, 588, 830, 1136
MboI GATC 6 cut(s) 58, 416, 464, 586, 828, 1134
MboII GAAGA 5 cut(s) 102, 154, 400, 668, 907
MflI RGATCY 3 cut(s) 416, 464, 1134
MlsI TGGCCA 1 cut(s) 1349
MluCI AATT 4 cut(s) 318, 532, 670, 1199
MluNI TGGCCA 1 cut(s) 1349
MlyI GAGTC 1 cut(s) 864
MmeI TCCRAC 2 cut(s) 210, 340
Mox20I TGGCCA 1 cut(s) 1349
Mph1103I ATGCAT 2 cut(s) 184, 1273
MscI TGGCCA 1 cut(s) 1349
MseI TTAA 4 cut(s) 531, 705, 966, 1314
MslI CAYNNNNRTG 1 cut(s) 177
Msp20I TGGCCA 1 cut(s) 1349
MspA1I CMGCKG 1 cut(s) 1262
MspCI CTTAAG 1 cut(s) 704
MspI CCGG 4 cut(s) 38, 246, 695, 813
MspR9I CCNGG 4 cut(s) 246, 326, 814, 1095
MvaI CCWGG 2 cut(s) 326, 1095
MvnI CGCG 1 cut(s) 293
MwoI GCNNNNNNNGC 5 cut(s) 350, 700, 1235, 1268, 1289
NciI CCSGG 2 cut(s) 246, 814
NdeII GATC 6 cut(s) 58, 416, 464, 586, 828, 1134
NlaIII CATG 2 cut(s) 1271, 1287
NlaIV GGNNCC 1 cut(s) 1384
NmuCI GTSAC 2 cut(s) 973, 1189
NsiI ATGCAT 2 cut(s) 184, 1273
NspI RCATGY 1 cut(s) 1271
NspV TTCGAA 3 cut(s) 316, 554, 1303
PcsI WCGNNNNNNNCGW 2 cut(s) 21, 1116
PfeI GAWTC 8 cut(s) 4, 370, 436, 476, 526, 954, 1035, 1300
PkrI GCNGC 4 cut(s) 403, 745, 1231, 1261
PleI GAGTC 1 cut(s) 864
PpsI GAGTC 1 cut(s) 864
Psp6I CCWGG 2 cut(s) 324, 1093
PspFI CCCAGC 2 cut(s) 664, 1157
PspGI CCWGG 2 cut(s) 324, 1093
PspN4I GGNNCC 1 cut(s) 1384
PspPI GGNCC 1 cut(s) 152
PsuI RGATCY 3 cut(s) 416, 464, 1134
RsaI GTAC 2 cut(s) 793, 1217
RsaNI GTAC 2 cut(s) 792, 1216
RseI CAYNNNNRTG 1 cut(s) 177
SalI GTCGAC 1 cut(s) 1174
SaqAI TTAA 4 cut(s) 531, 705, 966, 1314
SatI GCNGC 4 cut(s) 402, 744, 1230, 1260
Sau3AI GATC 6 cut(s) 58, 416, 464, 586, 828, 1134
Sau96I GGNCC 1 cut(s) 152
ScaI AGTACT 1 cut(s) 793
SchI GAGTC 1 cut(s) 864
ScrFI CCNGG 4 cut(s) 246, 326, 814, 1095
SfaNI GCATC 4 cut(s) 169, 191, 1121, 1132
SfcI CTRYAG 2 cut(s) 277, 604
SfuI TTCGAA 3 cut(s) 316, 554, 1303
SinI GGWCC 1 cut(s) 152
SmiMI CAYNNNNRTG 1 cut(s) 177
SmlI CTYRAG 2 cut(s) 704, 872
SmoI CTYRAG 2 cut(s) 704, 872
Sse9I AATT 4 cut(s) 318, 532, 670, 1199
SsiI CCGC 6 cut(s) 297, 344, 443, 683, 743, 1262
SspMI CTAG 2 cut(s) 350, 1253
StyD4I CCNGG 4 cut(s) 244, 324, 812, 1093
StyI CCWWGG 1 cut(s) 642
TaaI ACNGT 6 cut(s) 17, 608, 791, 843, 862, 1189
TaiI ACGT 2 cut(s) 105, 1170
TaqI TCGA 9 cut(s) 267, 316, 434, 509, 554, 774, 1119, 1175, 1303
TasI AATT 4 cut(s) 318, 532, 670, 1199
TatI WGTACW 1 cut(s) 791
TauI GCSGC 1 cut(s) 746
TfiI GAWTC 8 cut(s) 4, 370, 436, 476, 526, 954, 1035, 1300
Tru1I TTAA 4 cut(s) 531, 705, 966, 1314
Tru9I TTAA 4 cut(s) 531, 705, 966, 1314
TscAI CASTG 4 cut(s) 681, 951, 1006, 1048
TseFI GTSAC 2 cut(s) 973, 1189
TseI GCWGC 3 cut(s) 401, 1229, 1259
Tsp45I GTSAC 2 cut(s) 973, 1189
TspDTI ATGAA 7 cut(s) 17, 428, 501, 908, 1027, 1170, 1329
TspGWI ACGGA 4 cut(s) 189, 227, 236, 552
TspRI CASTG 4 cut(s) 681, 951, 1006, 1048
Vha464I CTTAAG 1 cut(s) 704
VpaK11BI GGWCC 1 cut(s) 152
XapI RAATTY 1 cut(s) 670
XceI RCATGY 1 cut(s) 1271
XmiI GTMKAC 1 cut(s) 1175
XspI CTAG 2 cut(s) 350, 1253
ZrmI AGTACT 1 cut(s) 793
Zsp2I ATGCAT 2 cut(s) 184, 1273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.