RLG00000015400

Senescence-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002216
Physical Location & Seq
Forward (+)
65556943 .. 65559837
2895 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015400

Sequence Viewer

Length: 1122 bp
ATGTCTTCAAATCCCAACTCTCTCTACCCACAAGTCATCCAAACCAACCCAGAAGCCAAACCCCCTTCCTCTTCTTCATCATCATCTTCTTCCATGTACCCTTCAGCCGACGTGACCCACCTCGCCGAGGACCTCTTCCCGGAAACCGACGCCGTTTCGGAAAATACCCAATCCTCTGAAGAGATCCTGGTCAAGATTCCGGGCGCGATCGTCCACCTCATCGAGAAGGACTACAGCATCGAACTGGCATGCGGCGAACTCACCATCGTCGGTCTCCGGCAAGGCGGCAACGTAGTCGCGGTGCTCGCGCGCGTCGGAGACGAGATTCAGTGGCCGCTGGCCAAGGACGAAGCGGCTGTCAAGCTCGATCACTCCCACTACTTCTTCAACCTACGCGTTCCGGCGAGTGGGGAAAATGGTGAGATGGAGCTGCTCAACTATGGATTGACGATTGCGACGAAGGGGCAGGACAGTTTGATGAAGGAGTTGGACCGGGTTCTGGAGACGTATAGTTGCTTTTCGGAGCAGAAGATGGAGGGTTTGGAGCACTGGGATGTTTTGGAGGGGTGTTCGGCGAGGGAGACTTCGCCGGAGGATTTAGATTCTGAAGATAAGAAGAAACGGATTGGTGACAGTTCCGCGGCGTACTGGACTACGCTGGCTCCGAATGTAGAGGATTACAGTGGGCGCTGTGCGAGGATGATTGCTTCCGGTTCGGGTCAGCTGATTAGGGGGATTTTGTGGTGTGGGGATGTGACTGTGGATAGGCTTAAGTGGGGAAATGAGTTCTTGAAGAAGAGGATGGGACCGTGTTCGAGTTCCGAGATTAGTCCAGAAAGCTTGAAGAGGATGCAAAGGGTTAAGAGGTTGACGAAGATGACTGAGAATGTGGCCTCTGGAATCCTTTCTGGGGTTGTTAAAGTATCTGGATTCTTTACAAGTGCAATTGTTAACTCGAGGGTGGGCAAGAAATTTTTTAGCCTTCTCCCTGGAGAAATTGTCCTGGCTTCCTTGGATGGATTCAGTAAGTCTTTTTATATAAACAACTTATATTACAAATACTCGGATACACTTTTTTGTGCTTTGTTGACATGCTTTGCATATTATAACATGGATTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Senescence

Protein Analysis

374

Amino Acids

41.19

Weight (kDa)

5.06

Isoelectric Point (pI)

45.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence PF06911 234 - 343 5.9e-23 Senescence domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1107
AccII CGCG 7 cut(s) 206, 299, 308, 310, 312, 396, 641
AciI CCGC 7 cut(s) 252, 285, 299, 335, 353, 639, 641
AclWI GGATC 1 cut(s) 178
AcoI YGGCCR 2 cut(s) 332, 339
AcsI RAATTY 1 cut(s) 971
AcuI CTGAAG 3 cut(s) 87, 198, 627
AcyI GRCGYC 1 cut(s) 150
AfaI GTAC 2 cut(s) 98, 647
AfiI CCNNNNNNNGG 5 cut(s) 127, 139, 407, 499, 910
AflII CTTAAG 1 cut(s) 770
AflIII ACRYGT 1 cut(s) 394
AgsI TTSAA 4 cut(s) 9, 388, 793, 844
AjiI CACGTC 1 cut(s) 112
AjnI CCWGG 3 cut(s) 186, 988, 1002
AluBI AGCT 4 cut(s) 364, 430, 724, 840
AluI AGCT 4 cut(s) 364, 430, 724, 840
Alw21I GWGCWC 2 cut(s) 306, 549
Alw26I GTCTC 4 cut(s) 278, 312, 497, 575
AlwI GGATC 1 cut(s) 178
Ama87I CYCGRG 1 cut(s) 955
AoxI GGCC 3 cut(s) 332, 339, 891
ApeKI GCWGC 1 cut(s) 430
ApoI RAATTY 1 cut(s) 971
ArsI GACNNNNNNTTYG 2 cut(s) 342, 374
Asp700I GAANNNNTTC 1 cut(s) 904
AspLEI GCGC 4 cut(s) 206, 310, 312, 690
AspS9I GGNCC 3 cut(s) 130, 490, 806
AsuC2I CCSGG 3 cut(s) 140, 201, 494
AsuHPI GGTGA 3 cut(s) 253, 431, 641
AvaI CYCGRG 1 cut(s) 955
AvaII GGWCC 3 cut(s) 130, 490, 806
BalI TGGCCA 1 cut(s) 341
Bbv12I GWGCWC 2 cut(s) 306, 549
BbvI GCAGC 1 cut(s) 417
BccI CCATC 5 cut(s) 272, 418, 526, 796, 1010
BceAI ACGGC 1 cut(s) 137
BcgI CGANNNNNNTGC 2 cut(s) 277, 311
BciT130I CCWGG 3 cut(s) 188, 990, 1004
BciVI GTATCC 1 cut(s) 1060
BcnI CCSGG 3 cut(s) 140, 201, 494
BcoDI GTCTC 4 cut(s) 278, 312, 497, 575
BfaI CTAG 1 cut(s) 1120
BfmI CTRYAG 1 cut(s) 232
BfoI RGCGCY 1 cut(s) 691
BfrI CTTAAG 1 cut(s) 770
BfuI GTATCC 1 cut(s) 1060
BisI GCNGC 6 cut(s) 253, 286, 335, 354, 431, 642
BlsI GCNGC 6 cut(s) 254, 287, 336, 355, 432, 643
Bme1390I CCNGG 6 cut(s) 140, 188, 201, 494, 990, 1004
Bme18I GGWCC 3 cut(s) 130, 490, 806
BmeT110I CYCGRG 1 cut(s) 955
BmgBI CACGTC 1 cut(s) 112
BmgT120I GGNCC 3 cut(s) 130, 490, 806
BmiI GGNNCC 2 cut(s) 663, 807
BmrFI CCNGG 6 cut(s) 140, 188, 201, 494, 990, 1004
BmrI ACTGGG 1 cut(s) 559
BmsI GCATC 2 cut(s) 246, 840
BmuI ACTGGG 1 cut(s) 559
BpmI CTGGAG 2 cut(s) 521, 1011
BpuMI CCSGG 3 cut(s) 140, 201, 494
BsaHI GRCGYC 1 cut(s) 150
BsaI GGTCTC 1 cut(s) 278
BsaJI CCNNGG 5 cut(s) 126, 342, 639, 988, 1011
BsaWI WCCGGW 1 cut(s) 710
BsaXI ACNNNNNCTCC 4 cut(s) 646, 676, 984, 1014
Bsc4I CCNNNNNNNGG 5 cut(s) 127, 139, 407, 499, 910
Bse1I ACTGG 3 cut(s) 249, 554, 653
BseBI CCWGG 3 cut(s) 188, 990, 1004
BseDI CCNNGG 5 cut(s) 126, 342, 639, 988, 1011
BseGI GGATG 7 cut(s) 36, 559, 705, 757, 807, 855, 1021
BseLI CCNNNNNNNGG 5 cut(s) 127, 139, 407, 499, 910
BseMII CTCAG 1 cut(s) 873
BseNI ACTGG 3 cut(s) 249, 554, 653
BsePI GCGCGC 1 cut(s) 308
BseXI GCAGC 1 cut(s) 417
Bsh1236I CGCG 7 cut(s) 206, 299, 308, 310, 312, 396, 641
Bsh1285I CGRYCG 1 cut(s) 210
BshFI GGCC 3 cut(s) 334, 341, 893
BsiEI CGRYCG 1 cut(s) 210
BsiHKAI GWGCWC 2 cut(s) 306, 549
BsiHKCI CYCGRG 1 cut(s) 955
BsiSI CCGG 7 cut(s) 140, 200, 277, 401, 493, 590, 711
BslFI GGGAC 1 cut(s) 819
BslI CCNNNNNNNGG 5 cut(s) 127, 139, 407, 499, 910
BsmAI GTCTC 4 cut(s) 278, 312, 497, 575
BsmBI CGTCTC 2 cut(s) 312, 497
BsmFI GGGAC 1 cut(s) 819
BsnI GGCC 3 cut(s) 334, 341, 893
Bso31I GGTCTC 1 cut(s) 278
BsoBI CYCGRG 1 cut(s) 955
Bsp1286I GDGCHC 2 cut(s) 306, 549
Bsp143I GATC 3 cut(s) 183, 207, 367
BspACI CCGC 7 cut(s) 252, 285, 299, 335, 353, 639, 641
BspANI GGCC 3 cut(s) 334, 341, 893
BspCNI CTCAG 1 cut(s) 874
BspFNI CGCG 7 cut(s) 206, 299, 308, 310, 312, 396, 641
BspLI GGNNCC 2 cut(s) 663, 807
BspPI GGATC 1 cut(s) 178
BspTI CTTAAG 1 cut(s) 770
BspTNI GGTCTC 1 cut(s) 278
BsrI ACTGG 3 cut(s) 249, 554, 653
BssECI CCNNGG 5 cut(s) 126, 342, 639, 988, 1011
BssHII GCGCGC 1 cut(s) 308
BssMI GATC 3 cut(s) 183, 207, 367
BssNI GRCGYC 1 cut(s) 150
BssT1I CCWWGG 2 cut(s) 342, 1011
Bst2UI CCWGG 3 cut(s) 188, 990, 1004
Bst4CI ACNGT 5 cut(s) 473, 635, 683, 760, 810
Bst6I CTCTTC 5 cut(s) 76, 140, 174, 791, 839
BstACI GRCGYC 1 cut(s) 150
BstAFI CTTAAG 1 cut(s) 770
BstC8I GCNNGC 5 cut(s) 250, 306, 310, 339, 660
BstDEI CTNAG 1 cut(s) 882
BstDSI CCRYGG 1 cut(s) 639
BstENI CCTNNNNNAGG 1 cut(s) 125
BstF5I GGATG 7 cut(s) 36, 559, 705, 757, 807, 855, 1021
BstFNI CGCG 7 cut(s) 206, 299, 308, 310, 312, 396, 641
BstH2I RGCGCY 1 cut(s) 691
BstHHI GCGC 4 cut(s) 206, 310, 312, 690
BstKTI GATC 3 cut(s) 186, 210, 370
BstMAI GTCTC 4 cut(s) 278, 312, 497, 575
BstMBI GATC 3 cut(s) 183, 207, 367
BstMCI CGRYCG 1 cut(s) 210
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstNI CCWGG 3 cut(s) 188, 990, 1004
BstNSI RCATGY 2 cut(s) 252, 1095
BstSCI CCNGG 6 cut(s) 138, 186, 199, 492, 988, 1002
BstSFI CTRYAG 1 cut(s) 232
BstUI CGCG 7 cut(s) 206, 299, 308, 310, 312, 396, 641
BstV1I GCAGC 1 cut(s) 417
BstX2I RGATCY 1 cut(s) 183
BstYI RGATCY 1 cut(s) 183
BsuI GTATCC 1 cut(s) 1060
BsuRI GGCC 3 cut(s) 334, 341, 893
BtgI CCRYGG 1 cut(s) 639
BtrI CACGTC 1 cut(s) 112
BtsCI GGATG 7 cut(s) 36, 559, 705, 757, 807, 855, 1021
BtsIMutI CAGTG 3 cut(s) 335, 547, 688
Cac8I GCNNGC 5 cut(s) 250, 306, 310, 339, 660
CfoI GCGC 4 cut(s) 206, 310, 312, 690
Cfr13I GGNCC 3 cut(s) 130, 490, 806
Cfr42I CCGCGG 1 cut(s) 642
CseI GACGC 2 cut(s) 158, 301
Csp6I GTAC 2 cut(s) 97, 646
CviAII CATG 4 cut(s) 94, 249, 1092, 1111
CviQI GTAC 2 cut(s) 97, 646
DdeI CTNAG 1 cut(s) 882
DpnI GATC 3 cut(s) 185, 209, 369
DpnII GATC 3 cut(s) 183, 207, 367
EaeI YGGCCR 2 cut(s) 332, 339
Eam1104I CTCTTC 5 cut(s) 76, 140, 174, 791, 839
EarI CTCTTC 5 cut(s) 76, 140, 174, 791, 839
Eco130I CCWWGG 2 cut(s) 342, 1011
Eco31I GGTCTC 1 cut(s) 278
Eco47I GGWCC 3 cut(s) 130, 490, 806
Eco57I CTGAAG 3 cut(s) 87, 198, 627
Eco88I CYCGRG 1 cut(s) 955
EcoNI CCTNNNNNAGG 1 cut(s) 125
EcoO109I RGGNCCY 1 cut(s) 130
EcoRII CCWGG 3 cut(s) 186, 988, 1002
EcoT14I CCWWGG 2 cut(s) 342, 1011
ErhI CCWWGG 2 cut(s) 342, 1011
Esp3I CGTCTC 2 cut(s) 312, 497
FaeI CATG 4 cut(s) 97, 252, 1095, 1114
FaqI GGGAC 1 cut(s) 819
FatI CATG 4 cut(s) 93, 248, 1091, 1110
Fnu4HI GCNGC 6 cut(s) 253, 286, 335, 354, 431, 642
FokI GGATG 7 cut(s) 23, 566, 712, 764, 814, 862, 1028
Fsp4HI GCNGC 6 cut(s) 253, 286, 335, 354, 431, 642
FspBI CTAG 1 cut(s) 1120
GlaI GCGC 4 cut(s) 205, 309, 311, 689
GluI GCNGC 6 cut(s) 253, 286, 335, 354, 431, 642
GsuI CTGGAG 2 cut(s) 521, 1011
HaeII RGCGCY 1 cut(s) 691
HaeIII GGCC 3 cut(s) 334, 341, 893
HapII CCGG 7 cut(s) 140, 200, 277, 401, 493, 590, 711
HgaI GACGC 2 cut(s) 158, 301
HhaI GCGC 4 cut(s) 206, 310, 312, 690
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 4 cut(s) 97, 252, 1095, 1114
Hin6I GCGC 4 cut(s) 204, 308, 310, 688
HinP1I GCGC 4 cut(s) 204, 308, 310, 688
HincII GTYRAC 3 cut(s) 870, 952, 1089
HindII GTYRAC 3 cut(s) 870, 952, 1089
HindIII AAGCTT 1 cut(s) 838
HinfI GANTC 6 cut(s) 196, 325, 602, 900, 930, 1020
HpaI GTTAAC 1 cut(s) 952
HpaII CCGG 7 cut(s) 140, 200, 277, 401, 493, 590, 711
HphI GGTGA 3 cut(s) 253, 431, 641
Hpy166II GTNNAC 4 cut(s) 214, 870, 952, 1089
Hpy188I TCNGA 8 cut(s) 160, 178, 317, 523, 607, 666, 823, 1066
Hpy188III TCNNGA 7 cut(s) 193, 223, 500, 790, 833, 897, 927
Hpy8I GTNNAC 4 cut(s) 214, 870, 952, 1089
Hpy99I CGWCG 5 cut(s) 113, 152, 272, 317, 460
HpyAV CCTTC 6 cut(s) 75, 111, 220, 454, 475, 992
HpyCH4III ACNGT 5 cut(s) 473, 635, 683, 760, 810
HpyCH4IV ACGT 3 cut(s) 111, 291, 506
HpyCH4V TGCA 3 cut(s) 853, 944, 1100
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpyF3I CTNAG 1 cut(s) 882
HpySE526I ACGT 3 cut(s) 111, 291, 506
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 4 cut(s) 97, 252, 1095, 1114
HspAI GCGC 4 cut(s) 204, 308, 310, 688
KspAI GTTAAC 1 cut(s) 952
KspI CCGCGG 1 cut(s) 642
Kzo9I GATC 3 cut(s) 183, 207, 367
LmnI GCTCC 4 cut(s) 427, 523, 544, 667
Lsp1109I GCAGC 1 cut(s) 417
LweI GCATC 2 cut(s) 246, 840
MaeI CTAG 1 cut(s) 1120
MaeII ACGT 3 cut(s) 111, 291, 506
MaeIII GTNAC 3 cut(s) 112, 629, 754
MalI GATC 3 cut(s) 185, 209, 369
MauBI CGCGCGCG 1 cut(s) 308
MboI GATC 3 cut(s) 183, 207, 367
MfeI CAATTG 1 cut(s) 945
MflI RGATCY 1 cut(s) 183
MhlI GDGCHC 2 cut(s) 306, 549
MlsI TGGCCA 1 cut(s) 341
MluCI AATT 3 cut(s) 945, 971, 996
MluI ACGCGT 1 cut(s) 394
MluNI TGGCCA 1 cut(s) 341
MmeI TCCRAC 2 cut(s) 295, 468
Mox20I TGGCCA 1 cut(s) 341
MroXI GAANNNNTTC 1 cut(s) 904
MscI TGGCCA 1 cut(s) 341
MseI TTAA 4 cut(s) 771, 861, 918, 951
MslI CAYNNNNRTG 1 cut(s) 552
Msp20I TGGCCA 1 cut(s) 341
MspA1I CMGCKG 3 cut(s) 337, 641, 724
MspCI CTTAAG 1 cut(s) 770
MspI CCGG 7 cut(s) 140, 200, 277, 401, 493, 590, 711
MspR9I CCNGG 6 cut(s) 140, 188, 201, 494, 990, 1004
MunI CAATTG 1 cut(s) 945
MvaI CCWGG 3 cut(s) 188, 990, 1004
MvnI CGCG 7 cut(s) 206, 299, 308, 310, 312, 396, 641
MwoI GCNNNNNNNGC 1 cut(s) 305
NciI CCSGG 3 cut(s) 140, 201, 494
NdeII GATC 3 cut(s) 183, 207, 367
NlaIII CATG 4 cut(s) 97, 252, 1095, 1114
NlaIV GGNNCC 2 cut(s) 663, 807
NmeAIII GCCGAG 1 cut(s) 151
NmuCI GTSAC 3 cut(s) 112, 629, 754
NspI RCATGY 2 cut(s) 252, 1095
PaeI GCATGC 1 cut(s) 252
PaeR7I CTCGAG 1 cut(s) 955
PauI GCGCGC 1 cut(s) 308
PcsI WCGNNNNNNNCGW 2 cut(s) 455, 662
PdmI GAANNNNTTC 1 cut(s) 904
PfeI GAWTC 6 cut(s) 196, 325, 602, 900, 930, 1020
PfoI TCCNGGA 1 cut(s) 138
PkrI GCNGC 6 cut(s) 254, 287, 336, 355, 432, 643
Ple19I CGATCG 1 cut(s) 210
PpuMI RGGWCCY 1 cut(s) 130
PsiI TTATAA 1 cut(s) 1107
Psp5II RGGWCCY 1 cut(s) 130
Psp6I CCWGG 3 cut(s) 186, 988, 1002
PspGI CCWGG 3 cut(s) 186, 988, 1002
PspN4I GGNNCC 2 cut(s) 663, 807
PspPI GGNCC 3 cut(s) 130, 490, 806
PspPPI RGGWCCY 1 cut(s) 130
PspXI VCTCGAGB 1 cut(s) 955
PsuI RGATCY 1 cut(s) 183
PteI GCGCGC 1 cut(s) 308
PvuI CGATCG 1 cut(s) 210
PvuII CAGCTG 1 cut(s) 724
RsaI GTAC 2 cut(s) 98, 647
RsaNI GTAC 2 cut(s) 97, 646
RseI CAYNNNNRTG 1 cut(s) 552
SacII CCGCGG 1 cut(s) 642
SaqAI TTAA 4 cut(s) 771, 861, 918, 951
SatI GCNGC 6 cut(s) 253, 286, 335, 354, 431, 642
Sau3AI GATC 3 cut(s) 183, 207, 367
Sau96I GGNCC 3 cut(s) 130, 490, 806
ScrFI CCNGG 6 cut(s) 140, 188, 201, 494, 990, 1004
SduI GDGCHC 2 cut(s) 306, 549
SfaNI GCATC 2 cut(s) 246, 840
SfcI CTRYAG 1 cut(s) 232
Sfr274I CTCGAG 1 cut(s) 955
Sfr303I CCGCGG 1 cut(s) 642
SgrBI CCGCGG 1 cut(s) 642
SinI GGWCC 3 cut(s) 130, 490, 806
SlaI CTCGAG 1 cut(s) 955
SmiMI CAYNNNNRTG 1 cut(s) 552
SmlI CTYRAG 2 cut(s) 770, 955
SmoI CTYRAG 2 cut(s) 770, 955
SphI GCATGC 1 cut(s) 252
Sse9I AATT 3 cut(s) 945, 971, 996
SsiI CCGC 7 cut(s) 252, 285, 299, 335, 353, 639, 641
SspMI CTAG 1 cut(s) 1120
StyD4I CCNGG 6 cut(s) 138, 186, 199, 492, 988, 1002
StyI CCWWGG 2 cut(s) 342, 1011
TaaI ACNGT 5 cut(s) 473, 635, 683, 760, 810
TaiI ACGT 3 cut(s) 114, 294, 509
TaqI TCGA 5 cut(s) 222, 240, 366, 815, 956
TaqII GACCGA 1 cut(s) 260
TasI AATT 3 cut(s) 945, 971, 996
TauI GCSGC 5 cut(s) 255, 288, 337, 356, 644
TfiI GAWTC 6 cut(s) 196, 325, 602, 900, 930, 1020
Tru1I TTAA 4 cut(s) 771, 861, 918, 951
Tru9I TTAA 4 cut(s) 771, 861, 918, 951
TscAI CASTG 3 cut(s) 335, 554, 688
TseFI GTSAC 3 cut(s) 112, 629, 754
TseI GCWGC 1 cut(s) 430
Tsp45I GTSAC 3 cut(s) 112, 629, 754
TspDTI ATGAA 2 cut(s) 66, 494
TspGWI ACGGA 1 cut(s) 637
TspRI CASTG 3 cut(s) 335, 554, 688
Vha464I CTTAAG 1 cut(s) 770
VpaK11BI GGWCC 3 cut(s) 130, 490, 806
XagI CCTNNNNNAGG 1 cut(s) 125
XapI RAATTY 1 cut(s) 971
XceI RCATGY 2 cut(s) 252, 1095
XhoI CTCGAG 1 cut(s) 955
XmnI GAANNNNTTC 1 cut(s) 904
XspI CTAG 1 cut(s) 1120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.