Rorug05G0506600

Senescence-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002216
Physical Location & Seq
Forward (+)
68873005 .. 68873617
613 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0506600.1

Sequence Viewer

Length: 504 bp
ATGAGCACAACCGCCACCGCCACCTATCTGCGCTCTTTGTCTCTCACGGCCGTCGTCCTCCTCGCCTCCTTGTTCGTCACTCTCGGCGCCGCAAAGCCAGCAAAAGAATCGCCTTCGTCCGCTTGCGCAGATGAGCTCGTCCGGTTCTCGCCGTACCTGTCGTACGTGGCGTCGCCGCAGAACAACCACTCTGACTCTCCGACGTCCAGGTGCTGCGATCCGTTCTCGTCGGCGGAGGAGTCCTGCCACGCCATTTGCCTCTGCTACCTGGTCCAGGATCCTCCGATGCTAGGCTTTTCGGTGACCGTCGCTCGCGCCCTCTCTCTCTCTTCCGTTTGCCGTCGCCGGAACTCCACCACTGCTTCTACTTCTCTTCAATCTCTCTGCTCAGAGTCGCCGGAACTCCCTCCTCTCCGCAACACCACGATTTCGGTGATTTCAGGTCCTCCTCCTTCTGGTACTAGTCTCACTCACTTCATCAGTATCTTGATTATTTTACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Senescence

Protein Analysis

167

Amino Acids

17.61

Weight (kDa)

6.79

Isoelectric Point (pI)

77.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 27 - 119 1.5e-11 Probable lipid transfer
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 206
Acc16I TGCGCA 1 cut(s) 127
AccB1I GGYRCC 1 cut(s) 86
AccII CGCG 1 cut(s) 315
AciI CCGC 7 cut(s) 12, 18, 90, 120, 176, 233, 415
AclWI GGATC 3 cut(s) 212, 272, 285
AcoI YGGCCR 1 cut(s) 48
AcyI GRCGYC 3 cut(s) 87, 170, 203
AfaI GTAC 3 cut(s) 155, 164, 460
AfiI CCNNNNNNNGG 3 cut(s) 274, 290, 455
AgsI TTSAA 1 cut(s) 377
AhlI ACTAGT 1 cut(s) 461
AjnI CCWGG 3 cut(s) 206, 267, 273
AluBI AGCT 1 cut(s) 136
AluI AGCT 1 cut(s) 136
Alw21I GWGCWC 2 cut(s) 8, 138
Alw26I GTCTC 2 cut(s) 45, 470
AlwI GGATC 3 cut(s) 212, 272, 285
AlwNI CAGNNNCTG 1 cut(s) 213
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 213
AspLEI GCGC 4 cut(s) 33, 89, 128, 317
AspS9I GGNCC 2 cut(s) 271, 443
AsuHPI GGTGA 2 cut(s) 313, 445
AvaII GGWCC 2 cut(s) 271, 443
BamHI GGATCC 1 cut(s) 277
BanI GGYRCC 1 cut(s) 86
BanII GRGCYC 1 cut(s) 138
Bbv12I GWGCWC 2 cut(s) 8, 138
BbvI GCAGC 1 cut(s) 200
BceAI ACGGC 4 cut(s) 35, 63, 136, 324
BcgI CGANNNNNNTGC 2 cut(s) 90, 124
BciT130I CCWGG 3 cut(s) 208, 269, 275
BcoDI GTCTC 2 cut(s) 45, 470
BcuI ACTAGT 1 cut(s) 461
BfaI CTAG 2 cut(s) 290, 462
BfoI RGCGCY 1 cut(s) 90
BisI GCNGC 3 cut(s) 90, 176, 214
BlsI GCNGC 3 cut(s) 91, 177, 215
Bme1390I CCNGG 3 cut(s) 208, 269, 275
Bme18I GGWCC 2 cut(s) 271, 443
BmgT120I GGNCC 2 cut(s) 271, 443
BmiI GGNNCC 2 cut(s) 88, 279
BmrFI CCNGG 3 cut(s) 208, 269, 275
BmsI GCATC 1 cut(s) 276
BsaAI YACGTR 1 cut(s) 166
BsaHI GRCGYC 3 cut(s) 87, 170, 203
BsaWI WCCGGW 1 cut(s) 141
Bsc4I CCNNNNNNNGG 3 cut(s) 274, 290, 455
BseBI CCWGG 3 cut(s) 208, 269, 275
BseLI CCNNNNNNNGG 3 cut(s) 274, 290, 455
BseMII CTCAG 1 cut(s) 402
BseRI GAGGAG 4 cut(s) 50, 251, 399, 438
BseX3I CGGCCG 1 cut(s) 48
BseXI GCAGC 1 cut(s) 200
Bsh1236I CGCG 1 cut(s) 315
Bsh1285I CGRYCG 1 cut(s) 51
BshFI GGCC 1 cut(s) 50
BshNI GGYRCC 1 cut(s) 86
BsiEI CGRYCG 1 cut(s) 51
BsiHKAI GWGCWC 2 cut(s) 8, 138
BsiSI CCGG 3 cut(s) 142, 346, 398
BsiWI CGTACG 1 cut(s) 162
BslI CCNNNNNNNGG 3 cut(s) 274, 290, 455
BsmAI GTCTC 2 cut(s) 45, 470
BsnI GGCC 1 cut(s) 50
Bsp1286I GDGCHC 2 cut(s) 8, 138
Bsp143I GATC 2 cut(s) 217, 277
BspACI CCGC 7 cut(s) 12, 18, 90, 120, 176, 233, 415
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 1 cut(s) 401
BspFNI CGCG 1 cut(s) 315
BspLI GGNNCC 2 cut(s) 88, 279
BspPI GGATC 3 cut(s) 212, 272, 285
BspT107I GGYRCC 1 cut(s) 86
BssMI GATC 2 cut(s) 217, 277
BssNI GRCGYC 3 cut(s) 87, 170, 203
Bst2UI CCWGG 3 cut(s) 208, 269, 275
Bst4CI ACNGT 1 cut(s) 307
Bst6I CTCTTC 2 cut(s) 334, 378
BstACI GRCGYC 3 cut(s) 87, 170, 203
BstBAI YACGTR 1 cut(s) 166
BstC8I GCNNGC 3 cut(s) 99, 124, 313
BstDEI CTNAG 1 cut(s) 388
BstEII GGTNACC 1 cut(s) 301
BstENI CCTNNNNNAGG 1 cut(s) 272
BstFNI CGCG 1 cut(s) 315
BstH2I RGCGCY 1 cut(s) 90
BstHHI GCGC 4 cut(s) 33, 89, 128, 317
BstKTI GATC 2 cut(s) 220, 280
BstMAI GTCTC 2 cut(s) 45, 470
BstMBI GATC 2 cut(s) 217, 277
BstMCI CGRYCG 1 cut(s) 51
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstNI CCWGG 3 cut(s) 208, 269, 275
BstPI GGTNACC 1 cut(s) 301
BstSCI CCNGG 3 cut(s) 206, 267, 273
BstUI CGCG 1 cut(s) 315
BstV1I GCAGC 1 cut(s) 200
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
BstZI CGGCCG 1 cut(s) 48
BsuRI GGCC 1 cut(s) 50
BtsI GCAGTG 1 cut(s) 357
BtsIMutI CAGTG 1 cut(s) 357
Cac8I GCNNGC 3 cut(s) 99, 124, 313
CaiI CAGNNNCTG 1 cut(s) 213
CfoI GCGC 4 cut(s) 33, 89, 128, 317
Cfr13I GGNCC 2 cut(s) 271, 443
CseI GACGC 1 cut(s) 159
CsiI ACCWGGT 1 cut(s) 267
Csp6I GTAC 3 cut(s) 154, 163, 459
CspCI CAANNNNNGTGG 2 cut(s) 236, 271
CviJI RGCY 4 cut(s) 50, 97, 136, 294
CviKI_1 RGCY 4 cut(s) 50, 97, 136, 294
CviQI GTAC 3 cut(s) 154, 163, 459
DdeI CTNAG 1 cut(s) 388
DinI GGCGCC 1 cut(s) 88
DpnI GATC 2 cut(s) 219, 279
DpnII GATC 2 cut(s) 217, 277
EaeI YGGCCR 1 cut(s) 48
EagI CGGCCG 1 cut(s) 48
Eam1104I CTCTTC 2 cut(s) 334, 378
EarI CTCTTC 2 cut(s) 334, 378
EciI GGCGGA 1 cut(s) 248
Ecl136II GAGCTC 1 cut(s) 136
EclXI CGGCCG 1 cut(s) 48
Eco24I GRGCYC 1 cut(s) 138
Eco47I GGWCC 2 cut(s) 271, 443
Eco52I CGGCCG 1 cut(s) 48
Eco53kI GAGCTC 1 cut(s) 136
Eco91I GGTNACC 1 cut(s) 301
EcoICRI GAGCTC 1 cut(s) 136
EcoNI CCTNNNNNAGG 1 cut(s) 272
EcoO109I RGGNCCY 1 cut(s) 443
EcoO65I GGTNACC 1 cut(s) 301
EcoRII CCWGG 3 cut(s) 206, 267, 273
EcoT38I GRGCYC 1 cut(s) 138
EgeI GGCGCC 1 cut(s) 88
EheI GGCGCC 1 cut(s) 88
Fnu4HI GCNGC 3 cut(s) 90, 176, 214
FriOI GRGCYC 1 cut(s) 138
Fsp4HI GCNGC 3 cut(s) 90, 176, 214
FspBI CTAG 2 cut(s) 290, 462
FspI TGCGCA 1 cut(s) 127
GlaI GCGC 4 cut(s) 32, 88, 127, 316
GluI GCNGC 3 cut(s) 90, 176, 214
HaeII RGCGCY 1 cut(s) 90
HaeIII GGCC 1 cut(s) 50
HapII CCGG 3 cut(s) 142, 346, 398
HgaI GACGC 1 cut(s) 159
HhaI GCGC 4 cut(s) 33, 89, 128, 317
Hin1I GRCGYC 3 cut(s) 87, 170, 203
Hin6I GCGC 4 cut(s) 31, 87, 126, 315
HinP1I GCGC 4 cut(s) 31, 87, 126, 315
HinfI GANTC 4 cut(s) 107, 194, 239, 392
HpaII CCGG 3 cut(s) 142, 346, 398
HphI GGTGA 2 cut(s) 313, 445
Hpy188I TCNGA 4 cut(s) 193, 201, 285, 391
Hpy188III TCNNGA 1 cut(s) 487
Hpy99I CGWCG 6 cut(s) 56, 175, 205, 232, 311, 345
HpyAV CCTTC 2 cut(s) 123, 462
HpyCH4III ACNGT 1 cut(s) 307
HpyCH4IV ACGT 2 cut(s) 165, 203
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpyF3I CTNAG 1 cut(s) 388
HpySE526I ACGT 2 cut(s) 165, 203
Hsp92I GRCGYC 3 cut(s) 87, 170, 203
HspAI GCGC 4 cut(s) 31, 87, 126, 315
KasI GGCGCC 1 cut(s) 86
Kzo9I GATC 2 cut(s) 217, 277
Lsp1109I GCAGC 1 cut(s) 200
LweI GCATC 1 cut(s) 276
MabI ACCWGGT 1 cut(s) 267
MaeI CTAG 2 cut(s) 290, 462
MaeII ACGT 2 cut(s) 165, 203
MaeIII GTNAC 2 cut(s) 76, 301
MalI GATC 2 cut(s) 219, 279
MboI GATC 2 cut(s) 217, 277
MboII GAAGA 2 cut(s) 321, 365
MflI RGATCY 1 cut(s) 277
MhlI GDGCHC 2 cut(s) 8, 138
Mly113I GGCGCC 1 cut(s) 87
MlyI GAGTC 3 cut(s) 188, 248, 401
MmeI TCCRAC 1 cut(s) 224
MseI TTAA 1 cut(s) 502
MspI CCGG 3 cut(s) 142, 346, 398
MspR9I CCNGG 3 cut(s) 208, 269, 275
MvaI CCWGG 3 cut(s) 208, 269, 275
MvnI CGCG 1 cut(s) 315
MwoI GCNNNNNNNGC 1 cut(s) 98
NarI GGCGCC 1 cut(s) 87
NdeII GATC 2 cut(s) 217, 277
NlaIV GGNNCC 2 cut(s) 88, 279
NmeAIII GCCGAG 1 cut(s) 63
NmuCI GTSAC 2 cut(s) 76, 301
NsbI TGCGCA 1 cut(s) 127
PcsI WCGNNNNNNNCGW 1 cut(s) 167
PfeI GAWTC 1 cut(s) 107
Pfl23II CGTACG 1 cut(s) 162
PfoI TCCNGGA 1 cut(s) 273
PkrI GCNGC 3 cut(s) 91, 177, 215
PleI GAGTC 3 cut(s) 188, 247, 400
PluTI GGCGCC 1 cut(s) 90
PpsI GAGTC 3 cut(s) 188, 247, 400
Ppu21I YACGTR 1 cut(s) 166
PpuMI RGGWCCY 1 cut(s) 443
Psp124BI GAGCTC 1 cut(s) 138
Psp5II RGGWCCY 1 cut(s) 443
Psp6I CCWGG 3 cut(s) 206, 267, 273
PspEI GGTNACC 1 cut(s) 301
PspGI CCWGG 3 cut(s) 206, 267, 273
PspLI CGTACG 1 cut(s) 162
PspN4I GGNNCC 2 cut(s) 88, 279
PspPI GGNCC 2 cut(s) 271, 443
PspPPI RGGWCCY 1 cut(s) 443
PstNI CAGNNNCTG 1 cut(s) 213
PsuI RGATCY 1 cut(s) 277
RsaI GTAC 3 cut(s) 155, 164, 460
RsaNI GTAC 3 cut(s) 154, 163, 459
SacI GAGCTC 1 cut(s) 138
SaqAI TTAA 1 cut(s) 502
SatI GCNGC 3 cut(s) 90, 176, 214
Sau3AI GATC 2 cut(s) 217, 277
Sau96I GGNCC 2 cut(s) 271, 443
SchI GAGTC 3 cut(s) 188, 248, 401
ScrFI CCNGG 3 cut(s) 208, 269, 275
SduI GDGCHC 2 cut(s) 8, 138
SetI ASST 9 cut(s) 26, 138, 159, 168, 206, 212, 270, 445, 502
SexAI ACCWGGT 1 cut(s) 267
SfaNI GCATC 1 cut(s) 276
SfoI GGCGCC 1 cut(s) 88
SinI GGWCC 2 cut(s) 271, 443
SpeI ACTAGT 1 cut(s) 461
SsiI CCGC 7 cut(s) 12, 18, 90, 120, 176, 233, 415
SspDI GGCGCC 1 cut(s) 86
SspMI CTAG 2 cut(s) 290, 462
SstI GAGCTC 1 cut(s) 138
StyD4I CCNGG 3 cut(s) 206, 267, 273
TaaI ACNGT 1 cut(s) 307
TaiI ACGT 2 cut(s) 168, 206
TauI GCSGC 2 cut(s) 92, 178
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 1 cut(s) 502
Tru9I TTAA 1 cut(s) 502
TscAI CASTG 1 cut(s) 364
TseFI GTSAC 2 cut(s) 76, 301
TseI GCWGC 1 cut(s) 213
Tsp45I GTSAC 2 cut(s) 76, 301
TspDTI ATGAA 1 cut(s) 466
TspGWI ACGGA 2 cut(s) 210, 322
TspRI CASTG 1 cut(s) 364
VpaK11BI GGWCC 2 cut(s) 271, 443
XagI CCTNNNNNAGG 1 cut(s) 272
XspI CTAG 2 cut(s) 290, 462
ZraI GACGTC 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.